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Iron in PDB 6khi: Supercomplex For Cylic Electron Transport in Cyanobacteria

Iron Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Iron atom in the Supercomplex For Cylic Electron Transport in Cyanobacteria (pdb code 6khi). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 14 binding sites of Iron where determined in the Supercomplex For Cylic Electron Transport in Cyanobacteria, PDB code: 6khi:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 14 in 6khi

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Iron binding site 1 out of 14 in the Supercomplex For Cylic Electron Transport in Cyanobacteria


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Supercomplex For Cylic Electron Transport in Cyanobacteria within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:28.9
occ:1.00
 FE1 I:SF4202 0.0 28.9 1.0
SG I:CYS103 2.2 26.5 1.0
S2 I:SF4202 2.3 28.9 1.0
S4 I:SF4202 2.3 28.9 1.0
S3 I:SF4202 2.3 28.9 1.0
FE2 I:SF4202 2.7 28.9 1.0
FE4 I:SF4202 2.7 28.9 1.0
FE3 I:SF4202 2.7 28.9 1.0
CB I:CYS103 3.7 26.5 1.0
S1 I:SF4202 3.9 28.9 1.0
N I:PHE105 4.1 27.3 1.0
N I:ILE104 4.2 26.1 1.0
CA I:CYS103 4.2 26.5 1.0
CA I:PHE105 4.6 27.3 1.0
C I:CYS103 4.6 26.5 1.0
CD2 I:LEU77 4.7 26.7 1.0
N I:CYS106 4.7 29.0 1.0
SG I:CYS109 4.7 32.4 1.0
SG I:CYS106 4.8 29.0 1.0
SG I:CYS73 4.8 29.1 1.0
C I:ILE104 5.0 26.1 1.0

Iron binding site 2 out of 14 in 6khi

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Iron binding site 2 out of 14 in the Supercomplex For Cylic Electron Transport in Cyanobacteria


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Supercomplex For Cylic Electron Transport in Cyanobacteria within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:28.9
occ:1.00
 FE2 I:SF4202 0.0 28.9 1.0
SG I:CYS109 2.3 32.4 1.0
S1 I:SF4202 2.3 28.9 1.0
S3 I:SF4202 2.3 28.9 1.0
S4 I:SF4202 2.3 28.9 1.0
FE1 I:SF4202 2.7 28.9 1.0
FE3 I:SF4202 2.7 28.9 1.0
FE4 I:SF4202 2.7 28.9 1.0
CB I:CYS109 3.1 32.4 1.0
N I:CYS109 3.7 32.4 1.0
S2 I:SF4202 3.9 28.9 1.0
CA I:CYS109 4.0 32.4 1.0
N I:ASN108 4.5 30.7 1.0
N I:ALA107 4.6 30.5 1.0
CA I:ALA107 4.6 30.5 1.0
SG I:CYS103 4.7 26.5 1.0
CB I:CYS73 4.7 29.1 1.0
SG I:CYS106 4.8 29.0 1.0
SG I:CYS73 4.8 29.1 1.0
CD1 I:ILE98 4.9 29.4 1.0
C I:ASN108 4.9 30.7 1.0
C I:ALA107 4.9 30.5 1.0
C I:CYS109 4.9 32.4 1.0
CG I:PRO78 5.0 27.7 1.0

Iron binding site 3 out of 14 in 6khi

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Iron binding site 3 out of 14 in the Supercomplex For Cylic Electron Transport in Cyanobacteria


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Supercomplex For Cylic Electron Transport in Cyanobacteria within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:28.9
occ:1.00
 FE3 I:SF4202 0.0 28.9 1.0
SG I:CYS73 2.3 29.1 1.0
S4 I:SF4202 2.3 28.9 1.0
S2 I:SF4202 2.3 28.9 1.0
S1 I:SF4202 2.3 28.9 1.0
FE4 I:SF4202 2.7 28.9 1.0
FE1 I:SF4202 2.7 28.9 1.0
FE2 I:SF4202 2.7 28.9 1.0
CB I:CYS73 3.0 29.1 1.0
CA I:CYS73 3.6 29.1 1.0
CD I:PRO74 3.7 27.5 1.0
S3 I:SF4202 3.9 28.9 1.0
CB I:LEU77 4.2 26.7 1.0
N I:PRO74 4.3 27.5 1.0
C I:CYS73 4.4 29.1 1.0
CD I:PRO78 4.6 27.7 1.0
SG I:CYS106 4.7 29.0 1.0
SG I:CYS109 4.8 32.4 1.0
N I:LEU77 4.8 26.7 1.0
SG I:CYS103 4.8 26.5 1.0
CG I:PRO78 4.9 27.7 1.0
N I:CYS73 4.9 29.1 1.0
CG1 I:ILE75 4.9 27.9 1.0
CB I:CYS109 5.0 32.4 1.0
O I:CYS69 5.0 35.0 1.0

Iron binding site 4 out of 14 in 6khi

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Iron binding site 4 out of 14 in the Supercomplex For Cylic Electron Transport in Cyanobacteria


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Supercomplex For Cylic Electron Transport in Cyanobacteria within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:28.9
occ:1.00
 FE4 I:SF4202 0.0 28.9 1.0
SG I:CYS106 2.3 29.0 1.0
S3 I:SF4202 2.3 28.9 1.0
S2 I:SF4202 2.3 28.9 1.0
S1 I:SF4202 2.3 28.9 1.0
FE3 I:SF4202 2.7 28.9 1.0
FE1 I:SF4202 2.7 28.9 1.0
FE2 I:SF4202 2.7 28.9 1.0
N I:ALA107 3.7 30.5 1.0
N I:CYS106 3.7 29.0 1.0
CB I:CYS106 3.7 29.0 1.0
CD I:PRO74 3.7 27.5 1.0
S4 I:SF4202 3.9 28.9 1.0
N I:ASN108 3.9 30.7 1.0
CA I:CYS106 4.1 29.0 1.0
C I:CYS106 4.2 29.0 1.0
CA I:ALA107 4.4 30.5 1.0
CB I:ASN108 4.5 30.7 1.0
CG I:PRO74 4.5 27.5 1.0
CG1 I:ILE104 4.6 26.1 1.0
N I:CYS109 4.6 32.4 1.0
N I:PHE105 4.7 27.3 1.0
SG I:CYS73 4.7 29.1 1.0
C I:ALA107 4.7 30.5 1.0
C I:PHE105 4.7 27.3 1.0
SG I:CYS103 4.7 26.5 1.0
CA I:ASN108 4.7 30.7 1.0
SG I:CYS109 4.8 32.4 1.0
CA I:CYS73 4.9 29.1 1.0
CA I:PHE105 5.0 27.3 1.0
CB I:CYS73 5.0 29.1 1.0
N I:PRO74 5.0 27.5 1.0

Iron binding site 5 out of 14 in 6khi

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Iron binding site 5 out of 14 in the Supercomplex For Cylic Electron Transport in Cyanobacteria


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Supercomplex For Cylic Electron Transport in Cyanobacteria within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe203

b:43.0
occ:1.00
 FE1 I:SF4203 0.0 43.0 1.0
SG I:CYS66 2.2 42.9 1.0
S2 I:SF4203 2.3 43.0 1.0
S4 I:SF4203 2.3 43.0 1.0
S3 I:SF4203 2.3 43.0 1.0
FE4 I:SF4203 2.7 43.0 1.0
FE2 I:SF4203 2.7 43.0 1.0
FE3 I:SF4203 2.7 43.0 1.0
CB I:CYS66 3.7 42.9 1.0
N I:CYS66 3.8 42.9 1.0
S1 I:SF4203 3.9 43.0 1.0
CA I:CYS66 4.1 42.9 1.0
C I:CYS66 4.1 42.9 1.0
O I:CYS66 4.4 42.9 1.0
CD I:PRO114 4.4 42.0 1.0
N I:VAL68 4.4 38.4 1.0
N I:GLU67 4.6 41.3 1.0
CG1 I:ILE64 4.6 47.6 1.0
N I:CYS69 4.7 35.0 1.0
SG I:CYS113 4.7 38.4 1.0
SG I:CYS63 4.7 46.3 1.0
SG I:CYS69 4.7 35.0 1.0
N I:ALA65 4.7 47.5 1.0
CB I:VAL68 4.8 38.4 1.0
CG I:PRO114 4.9 42.0 1.0
C I:ALA65 4.9 47.5 1.0
CG2 I:VAL68 4.9 38.4 1.0

Iron binding site 6 out of 14 in 6khi

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Iron binding site 6 out of 14 in the Supercomplex For Cylic Electron Transport in Cyanobacteria


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Supercomplex For Cylic Electron Transport in Cyanobacteria within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe203

b:43.0
occ:1.00
 FE2 I:SF4203 0.0 43.0 1.0
SG I:CYS69 2.3 35.0 1.0
S1 I:SF4203 2.3 43.0 1.0
S4 I:SF4203 2.3 43.0 1.0
S3 I:SF4203 2.3 43.0 1.0
FE1 I:SF4203 2.7 43.0 1.0
FE4 I:SF4203 2.7 43.0 1.0
FE3 I:SF4203 2.7 43.0 1.0
CB I:CYS69 2.8 35.0 1.0
N I:CYS69 3.7 35.0 1.0
CA I:CYS69 3.9 35.0 1.0
S2 I:SF4203 3.9 43.0 1.0
CE1 I:TYR96 4.1 36.0 1.0
OH I:TYR96 4.4 36.0 1.0
CZ I:TYR96 4.6 36.0 1.0
CD1 I:LEU118 4.6 34.6 1.0
SG I:CYS66 4.7 42.9 1.0
SG I:CYS63 4.7 46.3 1.0
SG I:CYS113 4.8 38.4 1.0
N I:VAL68 4.8 38.4 1.0
O I:CYS66 4.8 42.9 1.0
C I:CYS69 4.8 35.0 1.0
C I:VAL68 4.9 38.4 1.0

Iron binding site 7 out of 14 in 6khi

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Iron binding site 7 out of 14 in the Supercomplex For Cylic Electron Transport in Cyanobacteria


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Supercomplex For Cylic Electron Transport in Cyanobacteria within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe203

b:43.0
occ:1.00
 FE3 I:SF4203 0.0 43.0 1.0
SG I:CYS63 2.3 46.3 1.0
S4 I:SF4203 2.3 43.0 1.0
S1 I:SF4203 2.3 43.0 1.0
S2 I:SF4203 2.3 43.0 1.0
FE4 I:SF4203 2.7 43.0 1.0
FE1 I:SF4203 2.7 43.0 1.0
FE2 I:SF4203 2.7 43.0 1.0
CB I:CYS63 3.6 46.3 1.0
S3 I:SF4203 3.9 43.0 1.0
SG I:CYS117 4.0 40.5 1.0
CA I:CYS63 4.0 46.3 1.0
N I:ALA65 4.2 47.5 1.0
N I:ILE64 4.2 47.6 1.0
CE1 I:PHE58 4.5 39.4 1.0
C I:CYS63 4.5 46.3 1.0
CA I:ALA65 4.7 47.5 1.0
SG I:CYS66 4.8 42.9 1.0
SG I:CYS69 4.8 35.0 1.0
SG I:CYS113 4.8 38.4 1.0
N I:CYS66 4.8 42.9 1.0
CE1 I:TYR96 4.9 36.0 1.0

Iron binding site 8 out of 14 in 6khi

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Iron binding site 8 out of 14 in the Supercomplex For Cylic Electron Transport in Cyanobacteria


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Supercomplex For Cylic Electron Transport in Cyanobacteria within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe203

b:43.0
occ:1.00
 FE4 I:SF4203 0.0 43.0 1.0
SG I:CYS113 2.3 38.4 1.0
S3 I:SF4203 2.3 43.0 1.0
S1 I:SF4203 2.3 43.0 1.0
S2 I:SF4203 2.3 43.0 1.0
FE1 I:SF4203 2.7 43.0 1.0
FE3 I:SF4203 2.7 43.0 1.0
FE2 I:SF4203 2.7 43.0 1.0
SG I:CYS117 3.6 40.5 1.0
CB I:CYS113 3.7 38.4 1.0
S4 I:SF4203 3.9 43.0 1.0
CA I:CYS113 4.1 38.4 1.0
CD I:PRO114 4.3 42.0 1.0
CB I:CYS69 4.5 35.0 1.0
CG I:LEU118 4.6 34.6 1.0
OG1 I:THR115 4.6 42.0 1.0
CD1 I:LEU118 4.6 34.6 1.0
SG I:CYS66 4.8 42.9 1.0
SG I:CYS69 4.8 35.0 1.0
SG I:CYS63 4.8 46.3 1.0
C I:CYS113 4.9 38.4 1.0
N I:PRO114 4.9 42.0 1.0
CB I:LEU118 5.0 34.6 1.0

Iron binding site 9 out of 14 in 6khi

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Iron binding site 9 out of 14 in the Supercomplex For Cylic Electron Transport in Cyanobacteria


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Supercomplex For Cylic Electron Transport in Cyanobacteria within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe301

b:32.9
occ:1.00
 FE1 K:SF4301 0.0 32.9 1.0
S4 K:SF4301 2.2 32.5 1.0
SG K:CYS148 2.2 30.0 1.0
S2 K:SF4301 2.3 32.5 1.0
S3 K:SF4301 2.3 32.5 1.0
FE2 K:SF4301 2.7 32.5 1.0
FE3 K:SF4301 2.7 32.5 1.0
FE4 K:SF4301 2.7 32.5 1.0
O K:CYS148 3.3 30.0 1.0
CB K:CYS148 3.5 30.0 1.0
C K:CYS148 3.5 30.0 1.0
CA K:CYS148 3.8 30.0 1.0
S1 K:SF4301 3.8 32.5 1.0
NH2 H:ARG69 3.9 32.1 1.0
NE H:ARG69 4.0 32.1 1.0
CZ H:ARG69 4.3 32.1 1.0
N K:PRO149 4.3 30.4 1.0
SD K:MET123 4.6 29.5 1.0
SG K:CYS117 4.6 26.1 1.0
SG K:CYS53 4.7 30.1 1.0
SG K:CYS52 4.7 33.1 1.0

Iron binding site 10 out of 14 in 6khi

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Iron binding site 10 out of 14 in the Supercomplex For Cylic Electron Transport in Cyanobacteria


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Supercomplex For Cylic Electron Transport in Cyanobacteria within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe301

b:32.5
occ:1.00
 FE2 K:SF4301 0.0 32.5 1.0
SG K:CYS53 2.2 30.1 1.0
S3 K:SF4301 2.3 32.5 1.0
S1 K:SF4301 2.3 32.5 1.0
S4 K:SF4301 2.3 32.5 1.0
FE1 K:SF4301 2.7 32.9 1.0
FE3 K:SF4301 2.7 32.5 1.0
FE4 K:SF4301 2.7 32.5 1.0
O K:CYS148 3.0 30.0 1.0
CB K:CYS53 3.4 30.1 1.0
N K:CYS53 3.8 30.1 1.0
S2 K:SF4301 3.9 32.5 1.0
CA K:CYS53 4.0 30.1 1.0
C K:CYS148 4.1 30.0 1.0
CA K:GLY115 4.5 25.1 1.0
SG K:CYS52 4.6 33.1 1.0
SG K:CYS148 4.7 30.0 1.0
SG K:CYS117 4.8 26.1 1.0
CA K:CYS148 4.8 30.0 1.0
CB K:CYS117 4.8 26.1 1.0
C K:CYS52 4.9 33.1 1.0
N K:ALA116 4.9 24.4 1.0
N K:PRO149 5.0 30.4 1.0
CA K:GLY88 5.0 28.4 1.0

Reference:

X.Pan, D.Cao, F.Xie, F.Xu, X.Su, H.Mi, X.Zhang, M.Li. Structural Basis For Electron Transport Mechanism of Complex I-Like Photosynthetic Nad(P)H Dehydrogenase. Nat Commun V. 11 610 2020.
ISSN: ESSN 2041-1723
PubMed: 32001694
DOI: 10.1038/S41467-020-14456-0
Page generated: Wed Aug 7 00:18:08 2024

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