Iron in PDB 6khj: Supercomplex For Electron Transfer

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Supercomplex For Electron Transfer (pdb code 6khj). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Supercomplex For Electron Transfer, PDB code: 6khj:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Supercomplex For Electron Transfer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Supercomplex For Electron Transfer within 5.0Å range: probe atom residue distance (Å) B Occ I:Fe202 b:36.3 occ:1.00 FE1 I:SF4202 0.0 36.3 1.0 SG I:CYS103 2.3 29.4 1.0 S2 I:SF4202 2.3 36.3 1.0 S4 I:SF4202 2.3 36.3 1.0 S3 I:SF4202 2.3 36.3 1.0 FE2 I:SF4202 2.7 36.3 1.0 FE4 I:SF4202 2.7 36.3 1.0 FE3 I:SF4202 2.7 36.3 1.0 CB I:CYS103 3.7 29.4 1.0 S1 I:SF4202 3.9 36.3 1.0 N I:PHE105 4.0 31.9 1.0 CA I:CYS103 4.2 29.4 1.0 N I:ILE104 4.2 30.2 1.0 CD2 I:LEU77 4.3 31.7 1.0 CA I:PHE105 4.5 31.9 1.0 C I:CYS103 4.6 29.4 1.0 N I:CYS106 4.7 35.4 1.0 SG I:CYS109 4.8 41.0 1.0 SG I:CYS106 4.8 35.4 1.0 SG I:CYS73 4.8 34.0 1.0 C I:ILE104 5.0 30.2 1.0

Iron binding site 2 out of 12 in the Supercomplex For Electron Transfer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Supercomplex For Electron Transfer within 5.0Å range: probe atom residue distance (Å) B Occ I:Fe202 b:36.3 occ:1.00 FE2 I:SF4202 0.0 36.3 1.0 SG I:CYS109 2.3 41.0 1.0 S1 I:SF4202 2.3 36.3 1.0 S3 I:SF4202 2.3 36.3 1.0 S4 I:SF4202 2.3 36.3 1.0 FE1 I:SF4202 2.7 36.3 1.0 FE3 I:SF4202 2.7 36.3 1.0 FE4 I:SF4202 2.7 36.3 1.0 CB I:CYS109 3.3 41.0 1.0 N I:CYS109 3.8 41.0 1.0 S2 I:SF4202 3.9 36.3 1.0 CA I:CYS109 4.2 41.0 1.0 N I:ASN108 4.4 38.3 1.0 N I:ALA107 4.5 39.5 1.0 CA I:ALA107 4.6 39.5 1.0 CB I:CYS73 4.6 34.0 1.0 SG I:CYS103 4.7 29.4 1.0 SG I:CYS73 4.8 34.0 1.0 SG I:CYS106 4.8 35.4 1.0 CD1 I:ILE56 4.8 42.6 1.0 C I:ALA107 4.9 39.5 1.0 C I:ASN108 4.9 38.3 1.0

Iron binding site 3 out of 12 in the Supercomplex For Electron Transfer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Supercomplex For Electron Transfer within 5.0Å range: probe atom residue distance (Å) B Occ I:Fe202 b:36.3 occ:1.00 FE3 I:SF4202 0.0 36.3 1.0 SG I:CYS73 2.3 34.0 1.0 S4 I:SF4202 2.3 36.3 1.0 S2 I:SF4202 2.3 36.3 1.0 S1 I:SF4202 2.3 36.3 1.0 FE4 I:SF4202 2.7 36.3 1.0 FE2 I:SF4202 2.7 36.3 1.0 FE1 I:SF4202 2.7 36.3 1.0 CB I:CYS73 2.9 34.0 1.0 CA I:CYS73 3.6 34.0 1.0 CD I:PRO74 3.8 31.6 1.0 S3 I:SF4202 3.9 36.3 1.0 N I:PRO74 4.3 31.6 1.0 C I:CYS73 4.4 34.0 1.0 CB I:LEU77 4.4 31.7 1.0 CD I:PRO78 4.6 33.4 1.0 CD2 I:LEU77 4.6 31.7 1.0 SG I:CYS106 4.7 35.4 1.0 SG I:CYS109 4.8 41.0 1.0 SG I:CYS103 4.8 29.4 1.0 N I:CYS73 4.8 34.0 1.0 CG1 I:ILE75 4.9 31.1 1.0 N I:LEU77 5.0 31.7 1.0

Iron binding site 4 out of 12 in the Supercomplex For Electron Transfer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Supercomplex For Electron Transfer within 5.0Å range: probe atom residue distance (Å) B Occ I:Fe202 b:36.3 occ:1.00 FE4 I:SF4202 0.0 36.3 1.0 SG I:CYS106 2.3 35.4 1.0 S3 I:SF4202 2.3 36.3 1.0 S1 I:SF4202 2.3 36.3 1.0 S2 I:SF4202 2.3 36.3 1.0 FE3 I:SF4202 2.7 36.3 1.0 FE1 I:SF4202 2.7 36.3 1.0 FE2 I:SF4202 2.7 36.3 1.0 N I:CYS106 3.6 35.4 1.0 N I:ALA107 3.7 39.5 1.0 CB I:CYS106 3.8 35.4 1.0 CD I:PRO74 3.8 31.6 1.0 S4 I:SF4202 3.9 36.3 1.0 N I:ASN108 4.0 38.3 1.0 CA I:CYS106 4.1 35.4 1.0 C I:CYS106 4.2 35.4 1.0 N I:PHE105 4.5 31.9 1.0 CG1 I:ILE104 4.5 30.2 1.0 CA I:ALA107 4.5 39.5 1.0 CB I:ASN108 4.5 38.3 1.0 CG I:PRO74 4.6 31.6 1.0 SG I:CYS73 4.7 34.0 1.0 C I:PHE105 4.7 31.9 1.0 SG I:CYS103 4.7 29.4 1.0 SG I:CYS109 4.8 41.0 1.0 C I:ALA107 4.8 39.5 1.0 CA I:ASN108 4.9 38.3 1.0 CA I:CYS73 4.9 34.0 1.0 CA I:PHE105 4.9 31.9 1.0 N I:CYS109 4.9 41.0 1.0 CB I:CYS73 4.9 34.0 1.0

Iron binding site 5 out of 12 in the Supercomplex For Electron Transfer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Supercomplex For Electron Transfer within 5.0Å range: probe atom residue distance (Å) B Occ I:Fe203 b:56.2 occ:1.00 FE1 I:SF4203 0.0 56.2 1.0 SG I:CYS66 2.3 48.9 1.0 S2 I:SF4203 2.3 56.2 1.0 S4 I:SF4203 2.3 56.2 1.0 S3 I:SF4203 2.3 56.2 1.0 FE4 I:SF4203 2.7 56.2 1.0 FE3 I:SF4203 2.7 56.2 1.0 FE2 I:SF4203 2.7 56.2 1.0 CB I:CYS66 3.8 48.9 1.0 S1 I:SF4203 3.9 56.2 1.0 N I:CYS66 3.9 48.9 1.0 CA I:CYS66 4.1 48.9 1.0 C I:CYS66 4.1 48.9 1.0 CD I:PRO114 4.3 53.0 1.0 O I:CYS66 4.3 48.9 1.0 CG1 I:ILE64 4.4 52.6 1.0 N I:VAL68 4.5 42.4 1.0 N I:GLU67 4.6 45.1 1.0 CG I:PRO114 4.7 53.0 1.0 SG I:CYS63 4.7 56.2 1.0 SG I:CYS69 4.7 41.9 1.0 SG I:CYS113 4.7 52.6 1.0 N I:CYS69 4.7 41.9 1.0 N I:ALA65 4.8 52.0 1.0 CB I:VAL68 4.9 42.4 1.0 CG2 I:VAL68 4.9 42.4 1.0 C I:ALA65 4.9 52.0 1.0 CD1 I:ILE64 5.0 52.6 1.0

Iron binding site 6 out of 12 in the Supercomplex For Electron Transfer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Supercomplex For Electron Transfer within 5.0Å range: probe atom residue distance (Å) B Occ I:Fe203 b:56.2 occ:1.00 FE2 I:SF4203 0.0 56.2 1.0 SG I:CYS69 2.3 41.9 1.0 S4 I:SF4203 2.3 56.2 1.0 S1 I:SF4203 2.3 56.2 1.0 S3 I:SF4203 2.3 56.2 1.0 FE1 I:SF4203 2.7 56.2 1.0 FE4 I:SF4203 2.7 56.2 1.0 FE3 I:SF4203 2.7 56.2 1.0 CB I:CYS69 2.9 41.9 1.0 N I:CYS69 3.8 41.9 1.0 S2 I:SF4203 3.9 56.2 1.0 CA I:CYS69 3.9 41.9 1.0 CE1 I:TYR96 4.4 43.9 1.0 OH I:TYR96 4.6 43.9 1.0 SG I:CYS66 4.7 48.9 1.0 SG I:CYS63 4.7 56.2 1.0 SG I:CYS113 4.7 52.6 1.0 CD1 I:LEU118 4.8 49.7 1.0 O I:CYS66 4.9 48.9 1.0 N I:VAL68 4.9 42.4 1.0 CZ I:TYR96 4.9 43.9 1.0 C I:CYS69 4.9 41.9 1.0 C I:VAL68 5.0 42.4 1.0

Iron binding site 7 out of 12 in the Supercomplex For Electron Transfer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Supercomplex For Electron Transfer within 5.0Å range: probe atom residue distance (Å) B Occ I:Fe203 b:56.2 occ:1.00 FE3 I:SF4203 0.0 56.2 1.0 SG I:CYS63 2.2 56.2 1.0 S4 I:SF4203 2.3 56.2 1.0 S1 I:SF4203 2.3 56.2 1.0 S2 I:SF4203 2.3 56.2 1.0 FE1 I:SF4203 2.7 56.2 1.0 FE4 I:SF4203 2.7 56.2 1.0 FE2 I:SF4203 2.7 56.2 1.0 CB I:CYS63 3.7 56.2 1.0 S3 I:SF4203 3.9 56.2 1.0 CA I:CYS63 4.1 56.2 1.0 N I:ALA65 4.4 52.0 1.0 N I:ILE64 4.4 52.6 1.0 SG I:CYS117 4.4 55.9 1.0 CB I:CYS117 4.6 55.9 1.0 C I:CYS63 4.6 56.2 1.0 CE1 I:PHE58 4.7 50.3 1.0 SG I:CYS66 4.7 48.9 1.0 SG I:CYS69 4.8 41.9 1.0 SG I:CYS113 4.8 52.6 1.0 CA I:ALA65 4.9 52.0 1.0 N I:CYS66 4.9 48.9 1.0

Iron binding site 8 out of 12 in the Supercomplex For Electron Transfer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Supercomplex For Electron Transfer within 5.0Å range: probe atom residue distance (Å) B Occ I:Fe203 b:56.2 occ:1.00 FE4 I:SF4203 0.0 56.2 1.0 SG I:CYS113 2.3 52.6 1.0 S1 I:SF4203 2.3 56.2 1.0 S2 I:SF4203 2.3 56.2 1.0 S3 I:SF4203 2.3 56.2 1.0 FE1 I:SF4203 2.7 56.2 1.0 FE3 I:SF4203 2.7 56.2 1.0 FE2 I:SF4203 2.7 56.2 1.0 CB I:CYS113 3.6 52.6 1.0 S4 I:SF4203 3.9 56.2 1.0 CB I:CYS117 4.0 55.9 1.0 CA I:CYS113 4.1 52.6 1.0 CD I:PRO114 4.3 53.0 1.0 OG1 I:THR115 4.4 55.3 1.0 CB I:CYS69 4.6 41.9 1.0 SG I:CYS117 4.7 55.9 1.0 C I:CYS113 4.8 52.6 1.0 SG I:CYS66 4.8 48.9 1.0 SG I:CYS63 4.8 56.2 1.0 SG I:CYS69 4.8 41.9 1.0 N I:PRO114 4.8 53.0 1.0 N I:LEU118 4.9 49.7 1.0 CG I:LEU118 4.9 49.7 1.0 N I:CYS117 5.0 55.9 1.0

Iron binding site 9 out of 12 in the Supercomplex For Electron Transfer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Supercomplex For Electron Transfer within 5.0Å range: probe atom residue distance (Å) B Occ K:Fe301 b:31.3 occ:1.00 FE1 K:SF4301 0.0 31.3 1.0 SG K:CYS148 2.2 32.3 1.0 S4 K:SF4301 2.3 31.3 1.0 S2 K:SF4301 2.3 31.3 1.0 S3 K:SF4301 2.3 31.3 1.0 FE2 K:SF4301 2.7 31.3 1.0 FE4 K:SF4301 2.7 31.3 1.0 FE3 K:SF4301 2.7 31.3 1.0 O K:CYS148 3.3 32.3 1.0 CB K:CYS148 3.6 32.3 1.0 C K:CYS148 3.6 32.3 1.0 CA K:CYS148 3.8 32.3 1.0 NH2 H:ARG69 3.8 31.2 1.0 S1 K:SF4301 3.9 31.3 1.0 NE H:ARG69 4.0 31.2 1.0 CZ H:ARG69 4.3 31.2 1.0 N K:PRO149 4.4 31.9 1.0 SG K:CYS117 4.7 23.7 1.0 SG K:CYS53 4.7 29.1 1.0 SG K:CYS52 4.8 30.2 1.0 CB K:CYS52 4.9 30.2 1.0 CG H:ARG69 5.0 31.2 1.0

Iron binding site 10 out of 12 in the Supercomplex For Electron Transfer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Supercomplex For Electron Transfer within 5.0Å range: probe atom residue distance (Å) B Occ K:Fe301 b:31.3 occ:1.00 FE2 K:SF4301 0.0 31.3 1.0 SG K:CYS53 2.2 29.1 1.0 S3 K:SF4301 2.3 31.3 1.0 S1 K:SF4301 2.3 31.3 1.0 S4 K:SF4301 2.3 31.3 1.0 FE1 K:SF4301 2.7 31.3 1.0 FE3 K:SF4301 2.7 31.3 1.0 FE4 K:SF4301 2.7 31.3 1.0 O K:CYS148 3.1 32.3 1.0 CB K:CYS53 3.5 29.1 1.0 N K:CYS53 3.8 29.1 1.0 S2 K:SF4301 3.9 31.3 1.0 CA K:CYS53 4.0 29.1 1.0 C K:CYS148 4.1 32.3 1.0 CB K:CYS52 4.2 30.2 1.0 C K:CYS52 4.7 30.2 1.0 SG K:CYS52 4.7 30.2 1.0 SG K:CYS148 4.7 32.3 1.0 CA K:GLY115 4.7 24.8 1.0 CB K:CYS117 4.8 23.7 1.0 SG K:CYS117 4.8 23.7 1.0 CA K:GLY88 4.9 26.8 1.0 CA K:CYS148 4.9 32.3 1.0 CA K:CYS52 4.9 30.2 1.0 N K:PRO149 4.9 31.9 1.0

X.Pan, D.Cao, F.Xie, F.Xu, X.Su, H.Mi, X.Zhang, M.Li. Structural Basis For Electron Transport Mechanism of Complex I-Like Photosynthetic Nad(P)H Dehydrogenase. Nat Commun V. 11 610 2020.
ISSN: ESSN 2041-1723
PubMed: 32001694
DOI: 10.1038/S41467-020-14456-0