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Iron in PDB 6kls: Hyperthermophilic Respiratory Complex III

Iron Binding Sites:

The binding sites of Iron atom in the Hyperthermophilic Respiratory Complex III (pdb code 6kls). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the Hyperthermophilic Respiratory Complex III, PDB code: 6kls:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 10 in 6kls

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Iron binding site 1 out of 10 in the Hyperthermophilic Respiratory Complex III


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Hyperthermophilic Respiratory Complex III within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:0.0
occ:1.00
FE1 A:FES501 0.0 0.0 1.0
S2 A:FES501 2.2 0.8 1.0
S1 A:FES501 2.2 0.2 1.0
N A:HIS138 2.8 1.0 1.0
ND1 A:HIS138 2.9 1.0 1.0
SG A:CYS135 3.0 1.0 1.0
CB A:HIS138 3.1 1.0 1.0
FE2 A:FES501 3.1 0.9 1.0
CG A:HIS138 3.2 1.0 1.0
CB A:CYS137 3.2 1.0 1.0
CA A:HIS138 3.4 1.0 1.0
C A:CYS137 3.7 1.0 1.0
CA A:CYS137 3.9 1.0 1.0
CE1 A:HIS138 4.0 1.0 1.0
N A:CYS137 4.1 1.0 1.0
N A:GLY139 4.2 1.0 1.0
SG A:CYS111 4.2 1.0 1.0
C A:HIS138 4.2 1.0 1.0
CD2 A:HIS138 4.3 1.0 1.0
CB A:CYS116 4.4 1.0 1.0
SG A:CYS137 4.4 1.0 1.0
CE1 A:HIS113 4.4 1.0 1.0
SG A:CYS116 4.5 1.0 1.0
CB A:CYS135 4.6 1.0 1.0
NE2 A:HIS138 4.7 1.0 1.0
O A:CYS135 4.7 1.0 1.0
O A:CYS137 4.7 1.0 1.0
N A:GLY140 4.7 1.0 1.0
ND1 A:HIS113 4.9 1.0 1.0
CB A:CYS111 4.9 1.0 1.0

Iron binding site 2 out of 10 in 6kls

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Iron binding site 2 out of 10 in the Hyperthermophilic Respiratory Complex III


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Hyperthermophilic Respiratory Complex III within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:0.9
occ:1.00
FE2 A:FES501 0.0 0.9 1.0
S1 A:FES501 2.2 0.2 1.0
S2 A:FES501 2.2 0.8 1.0
ND1 A:HIS113 2.7 1.0 1.0
CE1 A:HIS113 3.0 1.0 1.0
SG A:CYS111 3.0 1.0 1.0
FE1 A:FES501 3.1 0.0 1.0
N A:LEU114 3.4 1.0 1.0
CG A:HIS113 3.7 1.0 1.0
CB A:CYS111 3.8 1.0 1.0
N A:HIS113 3.9 1.0 1.0
CB A:LEU114 3.9 1.0 1.0
NE2 A:HIS113 4.0 1.0 1.0
CA A:LEU114 4.1 1.0 1.0
C A:HIS113 4.2 1.0 1.0
N A:GLY115 4.3 1.0 1.0
CA A:HIS113 4.3 1.0 1.0
CB A:HIS113 4.4 1.0 1.0
CD2 A:HIS113 4.4 1.0 1.0
N A:THR112 4.4 1.0 1.0
C A:LEU114 4.5 1.0 1.0
CG A:HIS138 4.6 1.0 1.0
ND1 A:HIS138 4.6 1.0 1.0
SG A:CYS135 4.7 1.0 1.0
C A:CYS111 4.7 1.0 1.0
C A:THR112 4.8 1.0 1.0
CB A:HIS138 4.8 1.0 1.0
N A:CYS116 4.9 1.0 1.0
CA A:CYS111 4.9 1.0 1.0
CG A:LEU114 5.0 1.0 1.0
CD2 A:HIS138 5.0 1.0 1.0
CE1 A:HIS138 5.0 1.0 1.0

Iron binding site 3 out of 10 in 6kls

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Iron binding site 3 out of 10 in the Hyperthermophilic Respiratory Complex III


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Hyperthermophilic Respiratory Complex III within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:12.6
occ:1.00
FE B:HEM501 0.0 12.6 1.0
NB B:HEM501 2.0 14.2 1.0
NA B:HEM501 2.0 12.9 1.0
ND B:HEM501 2.0 14.4 1.0
NC B:HEM501 2.1 16.7 1.0
NE2 B:HIS91 2.5 30.0 1.0
NE2 B:HIS202 2.7 30.0 1.0
CE1 B:HIS202 2.8 30.0 1.0
C4D B:HEM501 3.0 13.4 1.0
C1C B:HEM501 3.0 16.0 1.0
C1B B:HEM501 3.1 13.2 1.0
C4B B:HEM501 3.1 13.3 1.0
C1A B:HEM501 3.1 13.9 1.0
C4A B:HEM501 3.1 12.0 1.0
C1D B:HEM501 3.1 13.7 1.0
C4C B:HEM501 3.1 16.4 1.0
CHC B:HEM501 3.4 15.1 1.0
CHA B:HEM501 3.4 12.7 1.0
CD2 B:HIS91 3.4 30.0 1.0
CHB B:HEM501 3.4 13.1 1.0
CHD B:HEM501 3.5 14.4 1.0
CE1 B:HIS91 3.5 30.0 1.0
CD2 B:HIS202 4.0 30.0 1.0
ND1 B:HIS202 4.1 30.0 1.0
C3D B:HEM501 4.3 13.0 1.0
C2B B:HEM501 4.3 14.2 1.0
C2C B:HEM501 4.3 17.5 1.0
C3B B:HEM501 4.3 13.9 1.0
C2D B:HEM501 4.3 15.7 1.0
C3A B:HEM501 4.3 14.6 1.0
C2A B:HEM501 4.3 16.1 1.0
C3C B:HEM501 4.3 17.6 1.0
ND1 B:HIS91 4.6 30.0 1.0
CG B:HIS91 4.6 30.0 1.0
CG B:HIS202 4.7 30.0 1.0
OE1 B:GLN51 4.8 30.0 1.0

Iron binding site 4 out of 10 in 6kls

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Iron binding site 4 out of 10 in the Hyperthermophilic Respiratory Complex III


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Hyperthermophilic Respiratory Complex III within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe502

b:16.0
occ:1.00
FE B:HEM502 0.0 16.0 1.0
NB B:HEM502 2.0 14.8 1.0
NC B:HEM502 2.0 9.9 1.0
ND B:HEM502 2.0 12.3 1.0
NA B:HEM502 2.0 13.7 1.0
NE2 B:HIS217 2.6 30.0 1.0
NE2 B:HIS105 2.6 30.0 1.0
C1B B:HEM502 3.0 14.3 1.0
C4A B:HEM502 3.0 13.2 1.0
C4B B:HEM502 3.0 14.4 1.0
C1C B:HEM502 3.0 13.2 1.0
C1A B:HEM502 3.1 14.9 1.0
C4C B:HEM502 3.1 11.3 1.0
C1D B:HEM502 3.1 12.6 1.0
C4D B:HEM502 3.1 14.4 1.0
CD2 B:HIS105 3.1 30.0 1.0
CD2 B:HIS217 3.2 30.0 1.0
CHB B:HEM502 3.4 14.3 1.0
CHC B:HEM502 3.4 14.9 1.0
CHD B:HEM502 3.4 12.7 1.0
CHA B:HEM502 3.4 15.5 1.0
CE1 B:HIS217 3.5 30.0 1.0
CE1 B:HIS105 3.8 30.0 1.0
C3A B:HEM502 4.2 13.2 1.0
C2B B:HEM502 4.2 14.4 1.0
C2A B:HEM502 4.3 11.8 1.0
C3B B:HEM502 4.3 16.6 1.0
C2C B:HEM502 4.3 12.6 1.0
C3C B:HEM502 4.3 10.8 1.0
C3D B:HEM502 4.3 15.2 1.0
C2D B:HEM502 4.3 14.2 1.0
CG B:HIS217 4.3 30.0 1.0
CG B:HIS105 4.3 30.0 1.0
ND1 B:HIS217 4.4 30.0 1.0
ND1 B:HIS105 4.6 30.0 1.0

Iron binding site 5 out of 10 in 6kls

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Iron binding site 5 out of 10 in the Hyperthermophilic Respiratory Complex III


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Hyperthermophilic Respiratory Complex III within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe302

b:28.2
occ:1.00
FE C:HEC302 0.0 28.2 1.0
NB C:HEC302 2.1 25.6 1.0
NA C:HEC302 2.1 25.3 1.0
NC C:HEC302 2.1 26.2 1.0
ND C:HEC302 2.1 25.9 1.0
NE2 C:HIS74 2.6 4.8 1.0
C1D C:HEC302 3.0 27.9 1.0
C4C C:HEC302 3.0 27.1 1.0
SD C:MET171 3.1 30.0 1.0
C4D C:HEC302 3.1 27.5 1.0
C1B C:HEC302 3.1 24.2 1.0
C4A C:HEC302 3.1 26.8 1.0
C1A C:HEC302 3.1 26.6 1.0
C1C C:HEC302 3.1 26.5 1.0
C4B C:HEC302 3.1 25.8 1.0
CD2 C:HIS74 3.4 4.8 1.0
CG C:MET171 3.4 30.0 1.0
CHD C:HEC302 3.4 27.9 1.0
CHA C:HEC302 3.4 26.3 1.0
CHB C:HEC302 3.4 26.2 1.0
CHC C:HEC302 3.5 25.5 1.0
CE1 C:HIS74 3.7 4.8 1.0
CB C:MET171 3.9 30.0 1.0
CE C:MET171 4.1 30.0 1.0
C2D C:HEC302 4.2 29.8 1.0
C3D C:HEC302 4.3 30.4 1.0
C2C C:HEC302 4.3 25.4 1.0
C3C C:HEC302 4.3 26.2 1.0
C3A C:HEC302 4.3 27.0 1.0
C2B C:HEC302 4.3 22.6 1.0
C2A C:HEC302 4.3 27.7 1.0
C3B C:HEC302 4.3 24.5 1.0
CG C:HIS74 4.6 4.8 1.0
ND1 C:HIS74 4.7 4.8 1.0
CE2 C:PHE158 4.7 30.0 1.0

Iron binding site 6 out of 10 in 6kls

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Iron binding site 6 out of 10 in the Hyperthermophilic Respiratory Complex III


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Hyperthermophilic Respiratory Complex III within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe501

b:0.0
occ:1.00
FE1 D:FES501 0.0 0.0 1.0
S1 D:FES501 2.2 0.2 1.0
S2 D:FES501 2.2 0.8 1.0
N D:HIS138 2.8 1.0 1.0
ND1 D:HIS138 2.9 1.0 1.0
SG D:CYS135 3.0 1.0 1.0
CB D:HIS138 3.1 1.0 1.0
FE2 D:FES501 3.1 0.9 1.0
CG D:HIS138 3.2 1.0 1.0
CB D:CYS137 3.2 1.0 1.0
CA D:HIS138 3.4 1.0 1.0
C D:CYS137 3.7 1.0 1.0
CA D:CYS137 3.9 1.0 1.0
CE1 D:HIS138 4.0 1.0 1.0
N D:CYS137 4.1 1.0 1.0
N D:GLY139 4.2 1.0 1.0
SG D:CYS111 4.2 1.0 1.0
C D:HIS138 4.2 1.0 1.0
CD2 D:HIS138 4.3 1.0 1.0
CB D:CYS116 4.4 1.0 1.0
SG D:CYS137 4.4 1.0 1.0
CE1 D:HIS113 4.4 1.0 1.0
SG D:CYS116 4.5 1.0 1.0
CB D:CYS135 4.6 1.0 1.0
NE2 D:HIS138 4.7 1.0 1.0
O D:CYS135 4.7 1.0 1.0
O D:CYS137 4.7 1.0 1.0
N D:GLY140 4.7 1.0 1.0
ND1 D:HIS113 4.9 1.0 1.0
CB D:CYS111 4.9 1.0 1.0

Iron binding site 7 out of 10 in 6kls

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Iron binding site 7 out of 10 in the Hyperthermophilic Respiratory Complex III


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Hyperthermophilic Respiratory Complex III within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe501

b:0.9
occ:1.00
FE2 D:FES501 0.0 0.9 1.0
S1 D:FES501 2.2 0.2 1.0
S2 D:FES501 2.2 0.8 1.0
ND1 D:HIS113 2.7 1.0 1.0
CE1 D:HIS113 3.0 1.0 1.0
SG D:CYS111 3.0 1.0 1.0
FE1 D:FES501 3.1 0.0 1.0
N D:LEU114 3.4 1.0 1.0
CG D:HIS113 3.7 1.0 1.0
CB D:CYS111 3.8 1.0 1.0
N D:HIS113 3.9 1.0 1.0
CB D:LEU114 3.9 1.0 1.0
NE2 D:HIS113 4.0 1.0 1.0
CA D:LEU114 4.1 1.0 1.0
C D:HIS113 4.2 1.0 1.0
N D:GLY115 4.3 1.0 1.0
CA D:HIS113 4.3 1.0 1.0
CB D:HIS113 4.4 1.0 1.0
CD2 D:HIS113 4.4 1.0 1.0
N D:THR112 4.4 1.0 1.0
C D:LEU114 4.5 1.0 1.0
CG D:HIS138 4.6 1.0 1.0
ND1 D:HIS138 4.6 1.0 1.0
SG D:CYS135 4.7 1.0 1.0
C D:CYS111 4.7 1.0 1.0
C D:THR112 4.8 1.0 1.0
CB D:HIS138 4.8 1.0 1.0
N D:CYS116 4.9 1.0 1.0
CA D:CYS111 4.9 1.0 1.0
CG D:LEU114 5.0 1.0 1.0
CD2 D:HIS138 5.0 1.0 1.0
CE1 D:HIS138 5.0 1.0 1.0

Iron binding site 8 out of 10 in 6kls

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Iron binding site 8 out of 10 in the Hyperthermophilic Respiratory Complex III


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Hyperthermophilic Respiratory Complex III within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe501

b:12.6
occ:1.00
FE E:HEM501 0.0 12.6 1.0
NB E:HEM501 2.0 14.2 1.0
NA E:HEM501 2.0 12.9 1.0
ND E:HEM501 2.0 14.4 1.0
NC E:HEM501 2.1 16.7 1.0
NE2 E:HIS91 2.5 30.0 1.0
NE2 E:HIS202 2.7 30.0 1.0
CE1 E:HIS202 2.8 30.0 1.0
C4D E:HEM501 3.0 13.4 1.0
C1C E:HEM501 3.0 16.0 1.0
C1B E:HEM501 3.1 13.2 1.0
C4B E:HEM501 3.1 13.3 1.0
C1A E:HEM501 3.1 13.9 1.0
C4A E:HEM501 3.1 12.0 1.0
C1D E:HEM501 3.1 13.7 1.0
C4C E:HEM501 3.1 16.4 1.0
CHC E:HEM501 3.4 15.1 1.0
CHA E:HEM501 3.4 12.7 1.0
CD2 E:HIS91 3.4 30.0 1.0
CHB E:HEM501 3.4 13.1 1.0
CHD E:HEM501 3.5 14.4 1.0
CE1 E:HIS91 3.5 30.0 1.0
CD2 E:HIS202 4.0 30.0 1.0
ND1 E:HIS202 4.1 30.0 1.0
C3D E:HEM501 4.3 13.0 1.0
C2B E:HEM501 4.3 14.2 1.0
C2C E:HEM501 4.3 17.5 1.0
C3B E:HEM501 4.3 13.9 1.0
C2D E:HEM501 4.3 15.7 1.0
C3A E:HEM501 4.3 14.6 1.0
C2A E:HEM501 4.3 16.1 1.0
C3C E:HEM501 4.3 17.6 1.0
CG E:HIS91 4.6 30.0 1.0
ND1 E:HIS91 4.6 30.0 1.0
CG E:HIS202 4.7 30.0 1.0
OE1 E:GLN51 4.8 30.0 1.0

Iron binding site 9 out of 10 in 6kls

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Iron binding site 9 out of 10 in the Hyperthermophilic Respiratory Complex III


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Hyperthermophilic Respiratory Complex III within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe502

b:16.0
occ:1.00
FE E:HEM502 0.0 16.0 1.0
NB E:HEM502 2.0 14.8 1.0
NC E:HEM502 2.0 9.9 1.0
NA E:HEM502 2.0 13.7 1.0
ND E:HEM502 2.0 12.3 1.0
NE2 E:HIS217 2.6 30.0 1.0
NE2 E:HIS105 2.6 30.0 1.0
C1B E:HEM502 3.0 14.3 1.0
C4A E:HEM502 3.0 13.2 1.0
C4B E:HEM502 3.0 14.4 1.0
C1C E:HEM502 3.0 13.2 1.0
C1A E:HEM502 3.1 14.9 1.0
C4C E:HEM502 3.1 11.3 1.0
C1D E:HEM502 3.1 12.6 1.0
C4D E:HEM502 3.1 14.4 1.0
CD2 E:HIS105 3.1 30.0 1.0
CD2 E:HIS217 3.2 30.0 1.0
CHB E:HEM502 3.4 14.3 1.0
CHC E:HEM502 3.4 14.9 1.0
CHD E:HEM502 3.4 12.7 1.0
CHA E:HEM502 3.4 15.5 1.0
CE1 E:HIS217 3.5 30.0 1.0
CE1 E:HIS105 3.8 30.0 1.0
C3A E:HEM502 4.2 13.2 1.0
C2B E:HEM502 4.2 14.4 1.0
C2A E:HEM502 4.3 11.8 1.0
C3B E:HEM502 4.3 16.6 1.0
C2C E:HEM502 4.3 12.6 1.0
C3C E:HEM502 4.3 10.8 1.0
C3D E:HEM502 4.3 15.2 1.0
C2D E:HEM502 4.3 14.2 1.0
CG E:HIS217 4.3 30.0 1.0
CG E:HIS105 4.3 30.0 1.0
ND1 E:HIS217 4.4 30.0 1.0
ND1 E:HIS105 4.6 30.0 1.0

Iron binding site 10 out of 10 in 6kls

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Iron binding site 10 out of 10 in the Hyperthermophilic Respiratory Complex III


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Hyperthermophilic Respiratory Complex III within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe302

b:28.2
occ:1.00
FE F:HEC302 0.0 28.2 1.0
NB F:HEC302 2.1 25.6 1.0
NA F:HEC302 2.1 25.3 1.0
NC F:HEC302 2.1 26.2 1.0
ND F:HEC302 2.1 25.9 1.0
NE2 F:HIS74 2.6 4.8 1.0
C1D F:HEC302 3.0 27.9 1.0
C4C F:HEC302 3.0 27.1 1.0
SD F:MET171 3.1 30.0 1.0
C4D F:HEC302 3.1 27.5 1.0
C1B F:HEC302 3.1 24.2 1.0
C4A F:HEC302 3.1 26.8 1.0
C1A F:HEC302 3.1 26.6 1.0
C1C F:HEC302 3.1 26.5 1.0
C4B F:HEC302 3.1 25.8 1.0
CD2 F:HIS74 3.4 4.8 1.0
CG F:MET171 3.4 30.0 1.0
CHD F:HEC302 3.4 27.9 1.0
CHA F:HEC302 3.4 26.3 1.0
CHB F:HEC302 3.4 26.2 1.0
CHC F:HEC302 3.5 25.5 1.0
CE1 F:HIS74 3.7 4.8 1.0
CB F:MET171 3.9 30.0 1.0
CE F:MET171 4.1 30.0 1.0
C2D F:HEC302 4.2 29.8 1.0
C2C F:HEC302 4.3 25.4 1.0
C3D F:HEC302 4.3 30.4 1.0
C3C F:HEC302 4.3 26.2 1.0
C3A F:HEC302 4.3 27.0 1.0
C2B F:HEC302 4.3 22.6 1.0
C2A F:HEC302 4.3 27.7 1.0
C3B F:HEC302 4.3 24.5 1.0
CG F:HIS74 4.6 4.8 1.0
ND1 F:HIS74 4.7 4.8 1.0
CE2 F:PHE158 4.7 30.0 1.0

Reference:

G.Zhu, H.Zeng, S.Zhang, J.Juli, X.Pang, J.Hoffmann, Y.Zhang, N.Morgner, Y.Zhu, G.Peng, H.Michel, F.Sun. A 3.3 Angstrom -Resolution Structure of Hyperthermophilic Respiratory Complex III Reveals the Mechanism of Its Thermal Stability. Angew.Chem.Int.Ed.Engl. V. 59 343 2020.
ISSN: ESSN 1521-3773
PubMed: 31778296
DOI: 10.1002/ANIE.201911554
Page generated: Sun Dec 13 16:36:56 2020

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