Iron in PDB 6l35: Psi-Lhci Supercomplex From Physcometrella Patens

Enzymatic activity of Psi-Lhci Supercomplex From Physcometrella Patens

All present enzymatic activity of Psi-Lhci Supercomplex From Physcometrella Patens:
1.97.1.12;

Other elements in 6l35:

The structure of Psi-Lhci Supercomplex From Physcometrella Patens also contains other interesting chemical elements:

Magnesium (Mg) 156 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Psi-Lhci Supercomplex From Physcometrella Patens (pdb code 6l35). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Psi-Lhci Supercomplex From Physcometrella Patens, PDB code: 6l35:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 6l35

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Iron binding site 1 out of 12 in the Psi-Lhci Supercomplex From Physcometrella Patens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Psi-Lhci Supercomplex From Physcometrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe853

b:60.5
occ:1.00
 FE1 A:SF4853 0.0 60.5 1.0
S3 A:SF4853 2.1 60.5 1.0
S2 A:SF4853 2.1 60.5 1.0
S4 A:SF4853 2.1 60.5 1.0
SG B:CYS568 2.4 52.1 1.0
SG A:CYS582 2.8 51.6 1.0
FE4 A:SF4853 3.0 60.5 1.0
FE3 A:SF4853 3.0 60.5 1.0
FE2 A:SF4853 3.0 60.5 1.0
SG B:CYS559 3.2 53.5 1.0
S1 A:SF4853 3.7 60.5 1.0
CB B:CYS568 3.7 52.1 1.0
CB B:CYS559 4.0 53.5 1.0
CD1 B:ILE702 4.1 48.1 1.0
CA B:CYS568 4.3 52.1 1.0
CZ3 B:TRP667 4.4 48.4 1.0
CB A:CYS582 4.4 51.6 1.0
NH2 B:ARG706 4.6 46.7 1.0
CE3 B:TRP667 4.7 48.4 1.0
SG A:CYS573 4.8 52.5 1.0

Iron binding site 2 out of 12 in 6l35

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Iron binding site 2 out of 12 in the Psi-Lhci Supercomplex From Physcometrella Patens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Psi-Lhci Supercomplex From Physcometrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe853

b:60.5
occ:1.00
 FE2 A:SF4853 0.0 60.5 1.0
SG A:CYS582 2.0 51.6 1.0
S3 A:SF4853 2.1 60.5 1.0
S1 A:SF4853 2.1 60.5 1.0
S4 A:SF4853 2.1 60.5 1.0
SG A:CYS573 2.3 52.5 1.0
CB A:CYS573 2.7 52.5 1.0
FE3 A:SF4853 3.0 60.5 1.0
FE1 A:SF4853 3.0 60.5 1.0
FE4 A:SF4853 3.0 60.5 1.0
CB A:CYS582 3.2 51.6 1.0
CA A:CYS582 3.4 51.6 1.0
S2 A:SF4853 3.7 60.5 1.0
N A:CYS582 3.8 51.6 1.0
SG B:CYS568 4.1 52.1 1.0
CA A:CYS573 4.2 52.5 1.0
C A:THR581 4.3 51.9 1.0
O A:GLY575 4.3 52.6 1.0
O A:THR581 4.5 51.9 1.0
SG B:CYS559 4.7 53.5 1.0
C A:CYS582 4.8 51.6 1.0
C A:GLY575 4.9 52.6 1.0
N A:CYS573 4.9 52.5 1.0
C A:CYS573 4.9 52.5 1.0
CD1 B:ILE702 5.0 48.1 1.0

Iron binding site 3 out of 12 in 6l35

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Iron binding site 3 out of 12 in the Psi-Lhci Supercomplex From Physcometrella Patens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Psi-Lhci Supercomplex From Physcometrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe853

b:60.5
occ:1.00
 FE3 A:SF4853 0.0 60.5 1.0
S1 A:SF4853 2.1 60.5 1.0
S4 A:SF4853 2.1 60.5 1.0
S2 A:SF4853 2.1 60.5 1.0
SG B:CYS568 2.2 52.1 1.0
FE2 A:SF4853 3.0 60.5 1.0
FE1 A:SF4853 3.0 60.5 1.0
FE4 A:SF4853 3.0 60.5 1.0
SG A:CYS573 3.0 52.5 1.0
S3 A:SF4853 3.7 60.5 1.0
CB B:CYS568 3.8 52.1 1.0
CD1 A:ILE719 3.8 46.3 1.0
SG B:CYS559 4.1 53.5 1.0
O B:GLY561 4.3 53.3 1.0
CA B:CYS568 4.4 52.1 1.0
SG A:CYS582 4.4 51.6 1.0
CB A:CYS573 4.4 52.5 1.0
N B:CYS568 4.5 52.1 1.0
CA B:PRO562 4.5 54.0 1.0
C B:GLY561 4.5 53.3 1.0
N B:PRO562 4.6 54.0 1.0
CG2 A:ILE719 4.7 46.3 1.0
CB B:CYS559 4.8 53.5 1.0
CB B:PRO562 4.8 54.0 1.0

Iron binding site 4 out of 12 in 6l35

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Iron binding site 4 out of 12 in the Psi-Lhci Supercomplex From Physcometrella Patens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Psi-Lhci Supercomplex From Physcometrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe853

b:60.5
occ:1.00
 FE4 A:SF4853 0.0 60.5 1.0
SG B:CYS559 2.0 53.5 1.0
S2 A:SF4853 2.1 60.5 1.0
S1 A:SF4853 2.1 60.5 1.0
S3 A:SF4853 2.1 60.5 1.0
FE1 A:SF4853 3.0 60.5 1.0
FE3 A:SF4853 3.0 60.5 1.0
FE2 A:SF4853 3.0 60.5 1.0
CB B:CYS559 3.5 53.5 1.0
SG A:CYS573 3.7 52.5 1.0
S4 A:SF4853 3.7 60.5 1.0
N A:PRO576 3.7 52.5 1.0
CB A:PRO576 3.7 52.5 1.0
CA A:PRO576 3.9 52.5 1.0
C A:GLY575 3.9 52.6 1.0
CD A:PRO576 4.0 52.5 1.0
SG A:CYS582 4.1 51.6 1.0
SG B:CYS568 4.1 52.1 1.0
O A:GLY575 4.2 52.6 1.0
CG A:PRO576 4.3 52.5 1.0
N B:GLY561 4.3 53.3 1.0
CA B:GLY561 4.3 53.3 1.0
C B:GLY561 4.4 53.3 1.0
O B:GLY561 4.6 53.3 1.0
CA A:GLY575 4.6 52.6 1.0
CA B:CYS559 4.7 53.5 1.0
CD1 B:ILE702 4.8 48.1 1.0
N B:PRO562 4.9 54.0 1.0

Iron binding site 5 out of 12 in 6l35

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Iron binding site 5 out of 12 in the Psi-Lhci Supercomplex From Physcometrella Patens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Psi-Lhci Supercomplex From Physcometrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:74.2
occ:1.00
 FE1 C:SF4101 0.0 74.2 1.0
SG C:CYS51 1.3 60.4 1.0
S2 C:SF4101 2.1 74.2 1.0
S4 C:SF4101 2.1 74.2 1.0
S3 C:SF4101 2.1 74.2 1.0
CB C:CYS51 2.7 60.4 1.0
N C:CYS51 2.8 60.4 1.0
FE4 C:SF4101 3.0 74.2 1.0
FE3 C:SF4101 3.0 74.2 1.0
FE2 C:SF4101 3.1 74.2 1.0
CA C:CYS51 3.2 60.4 1.0
SG C:CYS48 3.3 67.8 1.0
N C:LYS52 3.4 57.2 1.0
C C:CYS51 3.7 60.4 1.0
S1 C:SF4101 3.7 74.2 1.0
C C:GLY50 3.8 58.6 1.0
SG C:CYS54 4.0 63.2 1.0
N C:GLY50 4.0 58.6 1.0
SG C:CYS21 4.2 66.4 1.0
CA C:GLY50 4.3 58.6 1.0
N C:ARG53 4.4 58.3 1.0
CA C:LYS52 4.4 57.2 1.0
CG2 C:VAL49 4.5 61.8 1.0
N C:VAL49 4.6 61.8 1.0
O C:GLY50 4.8 58.6 1.0
O C:CYS51 4.8 60.4 1.0
CD C:PRO22 4.9 64.6 1.0
CB C:CYS48 4.9 67.8 1.0
C C:LYS52 5.0 57.2 1.0

Iron binding site 6 out of 12 in 6l35

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Iron binding site 6 out of 12 in the Psi-Lhci Supercomplex From Physcometrella Patens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Psi-Lhci Supercomplex From Physcometrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:74.2
occ:1.00
 FE2 C:SF4101 0.0 74.2 1.0
SG C:CYS21 1.2 66.4 1.0
S3 C:SF4101 2.1 74.2 1.0
S4 C:SF4101 2.1 74.2 1.0
S1 C:SF4101 2.1 74.2 1.0
CB C:CYS21 2.6 66.4 1.0
FE3 C:SF4101 3.0 74.2 1.0
FE4 C:SF4101 3.0 74.2 1.0
FE1 C:SF4101 3.1 74.2 1.0
CA C:CYS21 3.2 66.4 1.0
SG C:CYS51 3.2 60.4 1.0
SG C:CYS54 3.5 63.2 1.0
S2 C:SF4101 3.7 74.2 1.0
C C:CYS21 3.9 66.4 1.0
CD C:PRO22 4.0 64.6 1.0
N C:PRO22 4.2 64.6 1.0
SG C:CYS48 4.2 67.8 1.0
N C:CYS21 4.4 66.4 1.0
OG1 C:THR23 4.6 66.4 1.0
O C:CYS21 4.8 66.4 1.0
CB C:VAL25 4.8 65.3 1.0
CB C:CYS54 4.8 63.2 1.0
CD1 C:LEU26 4.8 66.3 1.0
N C:THR23 5.0 66.4 1.0
N C:CYS54 5.0 63.2 1.0
CB C:CYS51 5.0 60.4 1.0

Iron binding site 7 out of 12 in 6l35

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Iron binding site 7 out of 12 in the Psi-Lhci Supercomplex From Physcometrella Patens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Psi-Lhci Supercomplex From Physcometrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:74.2
occ:1.00
 FE3 C:SF4101 0.0 74.2 1.0
SG C:CYS54 1.4 63.2 1.0
S2 C:SF4101 2.1 74.2 1.0
S1 C:SF4101 2.1 74.2 1.0
S4 C:SF4101 2.1 74.2 1.0
FE2 C:SF4101 3.0 74.2 1.0
FE1 C:SF4101 3.0 74.2 1.0
FE4 C:SF4101 3.1 74.2 1.0
CB C:CYS54 3.2 63.2 1.0
SG C:CYS48 3.5 67.8 1.0
S3 C:SF4101 3.7 74.2 1.0
SG C:CYS51 3.8 60.4 1.0
SG C:CYS21 3.8 66.4 1.0
CG2 C:VAL67 3.8 59.7 1.0
N C:CYS54 3.9 63.2 1.0
CA C:CYS54 4.2 63.2 1.0
N C:LYS52 4.3 57.2 1.0
CA C:LYS52 4.5 57.2 1.0
CD1 C:LEU26 4.7 66.3 1.0
N C:ARG53 4.7 58.3 1.0
C C:LYS52 4.9 57.2 1.0
CG1 C:VAL67 4.9 59.7 1.0
CB C:VAL67 5.0 59.7 1.0

Iron binding site 8 out of 12 in 6l35

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Iron binding site 8 out of 12 in the Psi-Lhci Supercomplex From Physcometrella Patens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Psi-Lhci Supercomplex From Physcometrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:74.2
occ:1.00
 FE4 C:SF4101 0.0 74.2 1.0
SG C:CYS48 1.2 67.8 1.0
S3 C:SF4101 2.1 74.2 1.0
S1 C:SF4101 2.1 74.2 1.0
S2 C:SF4101 2.1 74.2 1.0
CB C:CYS48 2.5 67.8 1.0
FE1 C:SF4101 3.0 74.2 1.0
FE2 C:SF4101 3.0 74.2 1.0
FE3 C:SF4101 3.1 74.2 1.0
CA C:CYS48 3.2 67.8 1.0
SG C:CYS21 3.6 66.4 1.0
S4 C:SF4101 3.7 74.2 1.0
SG C:CYS51 4.1 60.4 1.0
C C:CYS48 4.1 67.8 1.0
N C:VAL49 4.2 61.8 1.0
N C:CYS48 4.3 67.8 1.0
CG1 C:VAL25 4.4 65.3 1.0
CG2 C:VAL25 4.4 65.3 1.0
SG C:CYS54 4.4 63.2 1.0
CB C:VAL25 4.4 65.3 1.0
N C:GLY50 4.7 58.6 1.0
CG2 C:VAL5 4.9 60.0 1.0

Iron binding site 9 out of 12 in 6l35

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Iron binding site 9 out of 12 in the Psi-Lhci Supercomplex From Physcometrella Patens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Psi-Lhci Supercomplex From Physcometrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:79.7
occ:1.00
 FE1 C:SF4102 0.0 79.7 1.0
SG C:CYS58 1.3 65.4 1.0
S2 C:SF4102 2.1 79.7 1.0
S3 C:SF4102 2.1 79.7 1.0
S4 C:SF4102 2.1 79.7 1.0
CB C:CYS58 2.4 65.4 1.0
CA C:CYS58 2.9 65.4 1.0
FE4 C:SF4102 3.0 79.7 1.0
FE3 C:SF4102 3.0 79.7 1.0
FE2 C:SF4102 3.0 79.7 1.0
SG C:CYS17 3.0 69.3 1.0
SG C:CYS14 3.1 70.5 1.0
OG C:SER64 3.4 63.7 1.0
S1 C:SF4102 3.7 79.7 1.0
C C:CYS58 3.9 65.4 1.0
N C:CYS58 4.0 65.4 1.0
CD C:PRO59 4.1 64.1 1.0
SG C:CYS11 4.1 70.0 1.0
OG1 C:THR60 4.2 65.1 1.0
N C:PRO59 4.3 64.1 1.0
CG1 C:VAL65 4.5 60.3 1.0
CB C:CYS17 4.8 69.3 1.0
O C:CYS58 4.8 65.4 1.0
CB C:SER64 4.8 63.7 1.0
C C:ALA57 4.8 61.2 1.0
CB C:CYS14 4.9 70.5 1.0

Iron binding site 10 out of 12 in 6l35

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Iron binding site 10 out of 12 in the Psi-Lhci Supercomplex From Physcometrella Patens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Psi-Lhci Supercomplex From Physcometrella Patens within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:79.7
occ:1.00
 FE2 C:SF4102 0.0 79.7 1.0
SG C:CYS17 1.3 69.3 1.0
S1 C:SF4102 2.1 79.7 1.0
S4 C:SF4102 2.1 79.7 1.0
S3 C:SF4102 2.1 79.7 1.0
CB C:CYS17 2.7 69.3 1.0
FE3 C:SF4102 3.0 79.7 1.0
FE4 C:SF4102 3.0 79.7 1.0
FE1 C:SF4102 3.0 79.7 1.0
N C:CYS17 3.5 69.3 1.0
SG C:CYS11 3.6 70.0 1.0
S2 C:SF4102 3.7 79.7 1.0
CA C:CYS17 3.7 69.3 1.0
SG C:CYS14 3.9 70.5 1.0
SG C:CYS58 4.1 65.4 1.0
CB C:ALA40 4.3 67.3 1.0
N C:GLN16 4.5 68.5 1.0
N C:THR15 4.6 69.7 1.0
C C:GLN16 4.7 68.5 1.0
C C:CYS17 4.8 69.3 1.0
CG1 C:VAL65 4.8 60.3 1.0
CE C:MET28 4.8 69.5 1.0
N C:VAL18 4.8 66.9 1.0
C C:THR15 4.9 69.7 1.0
CA C:THR15 4.9 69.7 1.0
CB C:CYS58 5.0 65.4 1.0

Reference:

L.Zhao, Q.J.Yan, X.C.Qin. Antenna Arrangement and Energy Transfer Pathways of Psi-Lhci From the Moss Physcometrella Patens To Be Published.
Page generated: Wed Mar 3 13:52:23 2021

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