Iron in PDB 6l5b: The Structure of the Udgx Mutant H109E at A Post-Excision State

The structure of The Structure of the Udgx Mutant H109E at A Post-Excision State, PDB code: 6l5b was solved by W.Xie, J.Tu, H.Zeng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	21.27 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	38.736, 50.923, 40.285, 90.00, 91.31, 90.00
R / Rfree (%)	17.1 / 21.2

The binding sites of Iron atom in the The Structure of the Udgx Mutant H109E at A Post-Excision State (pdb code 6l5b). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the The Structure of the Udgx Mutant H109E at A Post-Excision State, PDB code: 6l5b:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the The Structure of the Udgx Mutant H109E at A Post-Excision State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Structure of the Udgx Mutant H109E at A Post-Excision State within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe301 b:12.3 occ:1.00 FE1 A:SF4301 0.0 12.3 1.0 S4 A:SF4301 2.2 18.7 1.0 S2 A:SF4301 2.2 16.1 1.0 S3 A:SF4301 2.2 16.3 1.0 SG A:CYS120 2.2 10.9 1.0 CB A:CYS120 2.9 11.7 1.0 FE3 A:SF4301 2.9 17.5 1.0 FE2 A:SF4301 2.9 15.9 1.0 FE4 A:SF4301 3.0 14.8 1.0 CA A:CYS120 3.6 12.5 1.0 S1 A:SF4301 3.8 20.3 1.0 N A:LYS94 4.1 11.7 1.0 CD1 A:TRP123 4.2 13.8 1.0 CB A:LYS94 4.4 11.9 1.0 N A:CYS120 4.4 12.6 1.0 NE1 A:TRP123 4.6 14.1 1.0 CA A:LYS94 4.7 14.3 1.0 SG A:CYS24 4.7 14.4 1.0 C A:CYS120 4.8 13.7 1.0 SG A:CYS27 4.8 12.9 1.0 O A:CYS120 4.8 14.9 1.0 N A:HIS95 4.9 14.5 1.0 ND1 A:HIS95 4.9 15.8 1.0 CG A:LYS94 5.0 11.1 1.0

Iron binding site 2 out of 4 in the The Structure of the Udgx Mutant H109E at A Post-Excision State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Structure of the Udgx Mutant H109E at A Post-Excision State within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe301 b:15.9 occ:1.00 FE2 A:SF4301 0.0 15.9 1.0 SG A:CYS24 2.2 14.4 1.0 S1 A:SF4301 2.2 20.3 1.0 S3 A:SF4301 2.2 16.3 1.0 S4 A:SF4301 2.2 18.7 1.0 FE3 A:SF4301 2.9 17.5 1.0 FE1 A:SF4301 2.9 12.3 1.0 FE4 A:SF4301 2.9 14.8 1.0 CB A:CYS24 3.1 15.3 1.0 N A:GLY26 3.4 14.9 1.0 CA A:GLY26 3.8 14.7 1.0 S2 A:SF4301 3.8 16.1 1.0 NE1 A:TRP123 4.1 14.1 1.0 C A:CYS24 4.1 16.3 1.0 N A:CYS27 4.1 14.1 1.0 CA A:CYS24 4.2 15.3 1.0 O A:CYS24 4.3 15.9 1.0 CB A:ALA4 4.3 14.2 1.0 C A:GLY26 4.4 13.2 1.0 N A:ARG25 4.4 14.9 1.0 C A:ARG25 4.4 18.1 1.0 CD1 A:TRP123 4.6 13.8 1.0 ND1 A:HIS95 4.7 15.8 1.0 CA A:ARG25 4.8 16.1 1.0 CA A:ALA4 4.9 16.3 1.0 SG A:CYS120 4.9 10.9 1.0

Iron binding site 3 out of 4 in the The Structure of the Udgx Mutant H109E at A Post-Excision State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The Structure of the Udgx Mutant H109E at A Post-Excision State within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe301 b:17.5 occ:1.00 FE3 A:SF4301 0.0 17.5 1.0 S2 A:SF4301 2.2 16.1 1.0 S4 A:SF4301 2.2 18.7 1.0 S1 A:SF4301 2.2 20.3 1.0 ND1 A:HIS95 2.2 15.8 1.0 FE4 A:SF4301 2.9 14.8 1.0 FE2 A:SF4301 2.9 15.9 1.0 FE1 A:SF4301 2.9 12.3 1.0 CG A:HIS95 3.2 16.4 1.0 CE1 A:HIS95 3.2 16.0 1.0 CB A:HIS95 3.5 15.4 1.0 S3 A:SF4301 3.8 16.3 1.0 N A:HIS95 3.9 14.5 1.0 CA A:HIS95 4.3 13.7 1.0 NE2 A:HIS95 4.3 16.6 1.0 CD2 A:HIS95 4.3 15.9 1.0 C A:LYS94 4.4 15.0 1.0 N A:TYR30 4.5 16.1 1.0 CB A:TYR30 4.6 17.9 1.0 CA A:TYR30 4.7 19.5 1.0 CB A:CYS24 4.7 15.3 1.0 CB A:LEU29 4.8 15.4 1.0 SG A:CYS24 4.8 14.4 1.0 SG A:CYS27 4.8 12.9 1.0 O A:CYS24 4.9 15.9 1.0 N A:LYS94 4.9 11.7 1.0 O A:LYS94 4.9 15.0 1.0 SG A:CYS120 4.9 10.9 1.0 CB A:LYS94 4.9 11.9 1.0 C A:LEU29 4.9 18.2 1.0 CA A:LYS94 4.9 14.3 1.0

Iron binding site 4 out of 4 in the The Structure of the Udgx Mutant H109E at A Post-Excision State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The Structure of the Udgx Mutant H109E at A Post-Excision State within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe301 b:14.8 occ:1.00 FE4 A:SF4301 0.0 14.8 1.0 S3 A:SF4301 2.2 16.3 1.0 S1 A:SF4301 2.2 20.3 1.0 S2 A:SF4301 2.2 16.1 1.0 SG A:CYS27 2.2 12.9 1.0 FE3 A:SF4301 2.9 17.5 1.0 FE2 A:SF4301 2.9 15.9 1.0 FE1 A:SF4301 3.0 12.3 1.0 N A:CYS27 3.2 14.1 1.0 CB A:CYS27 3.2 13.7 1.0 CA A:CYS27 3.6 16.4 1.0 S4 A:SF4301 3.8 18.7 1.0 C A:GLY26 4.0 13.2 1.0 C A:CYS27 4.1 17.6 1.0 O A:CYS27 4.3 18.1 1.0 CB A:LEU29 4.4 15.4 1.0 CA A:GLY26 4.5 14.7 1.0 N A:GLY26 4.6 14.9 1.0 N A:LEU29 4.6 15.9 1.0 N A:GLY28 4.8 16.0 1.0 CB A:CYS120 4.8 11.7 1.0 O A:GLY26 4.8 16.1 1.0 CG A:LEU29 4.9 16.4 1.0 ND1 A:HIS95 4.9 15.8 1.0 SG A:CYS120 5.0 10.9 1.0 N A:TYR30 5.0 16.1 1.0

W.Xie, J.Tu, H.Zeng. Structure of A Covalent Complex-Forming Udgx Mutant To Be Published.