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Iron in PDB 6lbc: Shrimp Ferritin-T158R

Enzymatic activity of Shrimp Ferritin-T158R

All present enzymatic activity of Shrimp Ferritin-T158R:
1.16.3.1;

Protein crystallography data

The structure of Shrimp Ferritin-T158R, PDB code: 6lbc was solved by G.Zhao, H.Chen, T.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.46 / 1.80
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 124.783, 124.783, 175.395, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 22.5

Iron Binding Sites:

The binding sites of Iron atom in the Shrimp Ferritin-T158R (pdb code 6lbc). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Shrimp Ferritin-T158R, PDB code: 6lbc:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in 6lbc

Go back to Iron Binding Sites List in 6lbc
Iron binding site 1 out of 6 in the Shrimp Ferritin-T158R


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Shrimp Ferritin-T158R within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:24.9
occ:1.00
 OE1 A:GLU24 2.1 23.7 1.0
OE1 A:GLU59 2.1 22.9 1.0
ND1 A:HIS62 2.3 26.5 1.0
CD A:GLU59 2.8 17.9 1.0
OE2 A:GLU59 2.9 25.7 1.0
CD A:GLU24 3.1 15.9 1.0
CG A:HIS62 3.2 18.3 1.0
CE1 A:HIS62 3.3 26.3 1.0
CB A:HIS62 3.5 14.1 1.0
O A:HOH358 3.5 21.1 1.0
OE2 A:GLU24 3.5 22.9 1.0
O A:HOH344 3.8 21.7 1.0
OE1 A:GLN138 4.1 17.3 1.0
CG A:GLU59 4.2 16.5 1.0
CD2 A:HIS62 4.4 23.4 1.0
NE2 A:HIS62 4.4 29.1 1.0
CG A:GLU24 4.4 16.3 1.0
CA A:GLU59 4.4 12.2 1.0
CG1 A:VAL107 4.6 12.7 1.0
CB A:GLU59 4.6 11.9 1.0
CB A:GLU24 4.8 12.2 1.0
O A:GLU59 4.9 12.9 1.0
CD1 A:TYR134 5.0 14.7 1.0
CA A:HIS62 5.0 15.7 1.0

Iron binding site 2 out of 6 in 6lbc

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Iron binding site 2 out of 6 in the Shrimp Ferritin-T158R


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Shrimp Ferritin-T158R within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:26.1
occ:1.00
 O B:HOH351 2.0 20.1 1.0
OE1 B:GLU24 2.1 19.3 1.0
OE1 B:GLU59 2.2 23.0 1.0
ND1 B:HIS62 2.3 25.5 1.0
CD B:GLU24 3.0 18.3 1.0
CD B:GLU59 3.0 24.3 1.0
CG B:HIS62 3.2 22.0 1.0
OE2 B:GLU59 3.2 26.5 1.0
OE2 B:GLU24 3.3 23.5 1.0
CE1 B:HIS62 3.3 27.8 1.0
CB B:HIS62 3.5 16.2 1.0
O B:HOH379 3.7 25.0 1.0
OE1 B:GLN138 4.1 18.5 1.0
CD2 B:HIS62 4.3 25.6 1.0
NE2 B:HIS62 4.3 30.4 1.0
CG B:GLU59 4.4 17.5 1.0
CG B:GLU24 4.4 16.7 1.0
CA B:GLU59 4.5 14.5 1.0
CG1 B:VAL107 4.5 15.5 1.0
CB B:GLU59 4.6 14.8 1.0
CB B:GLU24 4.8 14.5 1.0
CD1 B:TYR134 5.0 16.0 1.0
CA B:HIS62 5.0 15.8 1.0

Iron binding site 3 out of 6 in 6lbc

Go back to Iron Binding Sites List in 6lbc
Iron binding site 3 out of 6 in the Shrimp Ferritin-T158R


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Shrimp Ferritin-T158R within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:24.8
occ:1.00
 OE1 C:GLU59 2.1 22.9 1.0
OE1 C:GLU24 2.1 21.3 1.0
ND1 C:HIS62 2.2 19.2 1.0
O C:HOH379 2.3 22.8 1.0
CD C:GLU59 3.0 21.3 1.0
CG C:HIS62 3.1 18.4 1.0
CD C:GLU24 3.1 19.8 1.0
CE1 C:HIS62 3.2 27.4 1.0
OE2 C:GLU59 3.4 29.9 1.0
CB C:HIS62 3.4 14.8 1.0
OE2 C:GLU24 3.5 20.8 1.0
O C:HOH320 3.9 25.6 1.0
O C:HOH353 3.9 19.0 1.0
O C:HOH315 4.0 24.6 1.0
OE1 C:GLN138 4.2 19.9 1.0
NE2 C:HIS62 4.3 27.2 1.0
CD2 C:HIS62 4.3 21.5 1.0
CG C:GLU59 4.3 16.2 1.0
CA C:GLU59 4.4 13.6 1.0
CG C:GLU24 4.4 15.0 1.0
CB C:GLU59 4.6 15.4 1.0
CG1 C:VAL107 4.6 12.0 1.0
CB C:GLU24 4.7 12.6 1.0
O C:GLU59 4.9 12.7 1.0
CA C:HIS62 4.9 14.5 1.0
O C:HOH308 5.0 29.6 1.0
CD1 C:TYR134 5.0 12.1 1.0

Iron binding site 4 out of 6 in 6lbc

Go back to Iron Binding Sites List in 6lbc
Iron binding site 4 out of 6 in the Shrimp Ferritin-T158R


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Shrimp Ferritin-T158R within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:25.6
occ:1.00
 OE1 D:GLU24 2.0 20.6 1.0
OE1 D:GLU59 2.1 22.9 1.0
O D:HOH366 2.3 21.6 1.0
O D:HOH307 2.4 29.6 1.0
ND1 D:HIS62 2.5 27.2 1.0
CD D:GLU59 3.0 23.3 1.0
CD D:GLU24 3.0 19.0 1.0
OE2 D:GLU59 3.2 27.8 1.0
OE2 D:GLU24 3.3 21.2 1.0
CG D:HIS62 3.3 22.7 1.0
CE1 D:HIS62 3.5 24.2 1.0
CB D:HIS62 3.5 14.8 1.0
O D:HOH311 3.6 21.8 1.0
OE1 D:GLN138 4.2 25.1 1.0
O D:HOH331 4.2 27.5 1.0
CG D:GLU59 4.3 15.9 1.0
CG D:GLU24 4.3 16.7 1.0
CA D:GLU59 4.4 13.2 1.0
CG1 D:VAL107 4.5 11.9 1.0
CD2 D:HIS62 4.5 21.4 1.0
NE2 D:HIS62 4.6 24.4 1.0
CB D:GLU59 4.6 14.4 1.0
CB D:GLU24 4.7 12.3 1.0
O D:HOH315 4.7 30.1 1.0
O D:GLU59 4.9 12.8 1.0
CD1 D:TYR134 5.0 14.4 1.0

Iron binding site 5 out of 6 in 6lbc

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Iron binding site 5 out of 6 in the Shrimp Ferritin-T158R


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Shrimp Ferritin-T158R within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:26.6
occ:1.00
 OE1 E:GLU24 2.0 21.3 1.0
OE1 E:GLU59 2.1 20.3 1.0
O E:HOH374 2.3 23.1 1.0
ND1 E:HIS62 2.4 24.6 1.0
O E:HOH325 2.5 35.9 1.0
CD E:GLU59 2.8 24.3 1.0
OE2 E:GLU59 3.0 27.3 1.0
CD E:GLU24 3.1 15.7 1.0
CG E:HIS62 3.3 21.1 1.0
CE1 E:HIS62 3.4 31.5 1.0
CB E:HIS62 3.5 15.5 1.0
OE2 E:GLU24 3.6 19.9 1.0
O E:HOH368 3.8 20.9 1.0
O E:HOH357 4.1 23.7 1.0
CG E:GLU59 4.2 17.4 1.0
OE1 E:GLN138 4.3 19.1 1.0
CA E:GLU59 4.4 15.5 1.0
CG E:GLU24 4.4 15.2 1.0
O E:HOH359 4.5 28.6 1.0
NE2 E:HIS62 4.5 33.9 1.0
CD2 E:HIS62 4.5 25.2 1.0
CG1 E:VAL107 4.5 14.0 1.0
CB E:GLU24 4.6 13.2 1.0
CB E:GLU59 4.6 15.6 1.0
O E:GLU59 4.9 14.1 1.0

Iron binding site 6 out of 6 in 6lbc

Go back to Iron Binding Sites List in 6lbc
Iron binding site 6 out of 6 in the Shrimp Ferritin-T158R


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Shrimp Ferritin-T158R within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe201

b:25.9
occ:1.00
 OE1 F:GLU24 2.1 20.8 1.0
OE1 F:GLU59 2.2 25.7 1.0
O F:HOH344 2.3 22.3 1.0
ND1 F:HIS62 2.4 23.8 1.0
CD F:GLU24 3.0 18.9 1.0
CD F:GLU59 3.0 22.3 1.0
CG F:HIS62 3.2 22.3 1.0
OE2 F:GLU24 3.3 22.2 1.0
OE2 F:GLU59 3.3 27.3 1.0
CE1 F:HIS62 3.3 29.4 1.0
CB F:HIS62 3.5 16.2 1.0
O F:HOH308 3.8 20.4 1.0
O F:HOH324 3.9 24.1 1.0
OE1 F:GLN138 4.1 18.7 1.0
CD2 F:HIS62 4.3 22.2 1.0
CG F:GLU24 4.3 16.4 1.0
NE2 F:HIS62 4.4 27.8 1.0
CG F:GLU59 4.4 15.4 1.0
CA F:GLU59 4.4 14.8 1.0
CG1 F:VAL107 4.5 14.5 1.0
O F:HOH325 4.5 27.4 1.0
CB F:GLU59 4.6 16.0 1.0
CB F:GLU24 4.7 13.9 1.0
O F:GLU59 4.8 15.0 1.0
CD1 F:TYR134 4.9 15.7 1.0
CA F:HIS62 5.0 14.1 1.0

Reference:

G.Zhao, H.Chen. Shrimp Ferritin-T158R To Be Published.
Page generated: Wed Aug 7 00:49:24 2024

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