Atomistry » Iron » PDB 6ldl-6m1w » 6lnh
Atomistry »
  Iron »
    PDB 6ldl-6m1w »
      6lnh »

Iron in PDB 6lnh: Crystal Structure of Ido From Bacillus Thuringiensis

Enzymatic activity of Crystal Structure of Ido From Bacillus Thuringiensis

All present enzymatic activity of Crystal Structure of Ido From Bacillus Thuringiensis:
1.14.11.45;

Protein crystallography data

The structure of Crystal Structure of Ido From Bacillus Thuringiensis, PDB code: 6lnh was solved by Y.Feng, J.W.Huang, W.D.Liu, C.C.Chen, R.T.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.86 / 2.34
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 68.425, 120.965, 81.715, 90, 108.11, 90
R / Rfree (%) 22.8 / 26.4

Other elements in 6lnh:

The structure of Crystal Structure of Ido From Bacillus Thuringiensis also contains other interesting chemical elements:

Mercury (Hg) 7 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Ido From Bacillus Thuringiensis (pdb code 6lnh). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Ido From Bacillus Thuringiensis, PDB code: 6lnh:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 6lnh

Go back to Iron Binding Sites List in 6lnh
Iron binding site 1 out of 4 in the Crystal Structure of Ido From Bacillus Thuringiensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Ido From Bacillus Thuringiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe304

b:60.2
occ:1.00
O A:HOH418 2.5 30.0 1.0
O A:HOH419 2.6 68.9 1.0
NE2 A:HIS223 2.6 51.1 1.0
NE2 A:HIS170 2.7 56.0 1.0
OD2 A:ASP172 2.9 61.4 1.0
OD1 A:ASP172 2.9 60.9 1.0
CG A:ASP172 3.3 56.1 1.0
CE1 A:HIS170 3.4 50.7 1.0
CD2 A:HIS223 3.5 51.2 1.0
CE1 A:HIS223 3.7 51.1 1.0
CD2 A:HIS170 3.8 48.7 1.0
ND1 A:HIS170 4.7 48.0 1.0
CG A:HIS223 4.7 48.3 1.0
ND1 A:HIS223 4.7 50.0 1.0
CB A:ASP172 4.8 56.1 1.0
CG A:HIS170 4.9 52.3 1.0

Iron binding site 2 out of 4 in 6lnh

Go back to Iron Binding Sites List in 6lnh
Iron binding site 2 out of 4 in the Crystal Structure of Ido From Bacillus Thuringiensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Ido From Bacillus Thuringiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe304

b:48.3
occ:1.00
NE2 B:HIS223 2.2 50.1 1.0
O B:HOH406 2.3 45.3 1.0
NE2 B:HIS170 2.5 48.3 1.0
OD1 B:ASP172 2.6 46.9 1.0
O B:HOH430 2.7 50.2 1.0
OD2 B:ASP172 2.7 53.5 1.0
CG B:ASP172 3.0 45.0 1.0
O B:HOH432 3.0 59.8 1.0
CE1 B:HIS223 3.0 47.3 1.0
CD2 B:HIS223 3.3 43.3 1.0
CE1 B:HIS170 3.4 47.8 1.0
CD2 B:HIS170 3.5 42.7 1.0
ND1 B:HIS223 4.2 44.8 1.0
CG B:HIS223 4.3 43.1 1.0
ND1 B:HIS170 4.5 45.3 1.0
CB B:ASP172 4.5 46.4 1.0
CG B:HIS170 4.6 44.9 1.0

Iron binding site 3 out of 4 in 6lnh

Go back to Iron Binding Sites List in 6lnh
Iron binding site 3 out of 4 in the Crystal Structure of Ido From Bacillus Thuringiensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Ido From Bacillus Thuringiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe301

b:48.6
occ:1.00
O C:HOH405 2.4 37.8 1.0
O C:HOH438 2.5 47.8 1.0
O C:HOH437 2.5 45.0 1.0
NE2 C:HIS170 2.6 51.7 1.0
NE2 C:HIS223 2.6 39.1 1.0
CE1 C:HIS170 3.1 43.3 1.0
OD1 C:ASP172 3.3 42.9 1.0
CD2 C:HIS223 3.3 36.1 1.0
OD2 C:ASP172 3.5 42.4 1.0
CE1 C:HIS223 3.7 41.8 1.0
CD2 C:HIS170 3.8 41.0 1.0
CG C:ASP172 3.9 38.3 1.0
ND1 C:HIS170 4.4 47.2 1.0
CG C:HIS223 4.6 39.5 1.0
ND1 C:HIS223 4.7 42.3 1.0
CG C:HIS170 4.7 43.9 1.0

Iron binding site 4 out of 4 in 6lnh

Go back to Iron Binding Sites List in 6lnh
Iron binding site 4 out of 4 in the Crystal Structure of Ido From Bacillus Thuringiensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Ido From Bacillus Thuringiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe302

b:58.4
occ:1.00
NE2 D:HIS223 2.2 41.3 1.0
O D:HOH406 2.4 37.8 1.0
NE2 D:HIS170 2.5 48.3 1.0
OD1 D:ASP172 2.5 44.5 1.0
OD2 D:ASP172 2.6 44.4 1.0
CG D:ASP172 2.9 42.3 1.0
CE1 D:HIS223 3.1 45.3 1.0
O D:HOH423 3.2 48.0 1.0
CE1 D:HIS170 3.2 40.8 1.0
CD2 D:HIS223 3.2 37.0 1.0
CD2 D:HIS170 3.6 45.0 1.0
ND1 D:HIS223 4.2 43.0 1.0
CG D:HIS223 4.3 38.2 1.0
CB D:ASP172 4.4 47.6 1.0
ND1 D:HIS170 4.4 42.8 1.0
CG D:HIS170 4.6 48.3 1.0

Reference:

Y.Feng, J.W.Huang, W.D.Liu, C.C.Chen, R.T.Guo. Crystal Structure of Ido From Bacillus Thuringiensis To Be Published.
Page generated: Sun Jan 24 16:58:13 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy