Iron in PDB 6lod: Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 21;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii (pdb code 6lod). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 21 binding sites of Iron where determined in the Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii, PDB code: 6lod:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 21 in the Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe301 b:37.1 occ:1.00 FE A:HEC301 0.0 37.1 1.0 NE2 A:HIS98 2.0 39.0 1.0 NA A:HEC301 2.0 37.1 1.0 NC A:HEC301 2.0 37.1 1.0 NB A:HEC301 2.0 37.1 1.0 ND A:HEC301 2.1 37.1 1.0 NE2 A:HIS66 2.1 33.0 1.0 CE1 A:HIS98 2.4 39.0 1.0 CE1 A:HIS66 3.0 33.0 1.0 C1A A:HEC301 3.0 37.1 1.0 C1C A:HEC301 3.0 37.1 1.0 C4B A:HEC301 3.0 37.1 1.0 C4D A:HEC301 3.1 37.1 1.0 C4C A:HEC301 3.1 37.1 1.0 C4A A:HEC301 3.1 37.1 1.0 C1D A:HEC301 3.1 37.1 1.0 C1B A:HEC301 3.1 37.1 1.0 CD2 A:HIS66 3.1 33.0 1.0 CD2 A:HIS98 3.2 39.0 1.0 CHA A:HEC301 3.4 37.1 1.0 CHC A:HEC301 3.4 37.1 1.0 CHD A:HEC301 3.4 37.1 1.0 CHB A:HEC301 3.5 37.1 1.0 ND1 A:HIS98 3.7 39.0 1.0 CG A:HIS98 4.1 39.0 1.0 ND1 A:HIS66 4.1 33.0 1.0 CG A:HIS66 4.2 33.0 1.0 C2A A:HEC301 4.2 37.1 1.0 C2C A:HEC301 4.3 37.1 1.0 C3A A:HEC301 4.3 37.1 1.0 C3B A:HEC301 4.3 37.1 1.0 C3C A:HEC301 4.3 37.1 1.0 C2B A:HEC301 4.3 37.1 1.0 C3D A:HEC301 4.3 37.1 1.0 C2D A:HEC301 4.3 37.1 1.0

Iron binding site 2 out of 21 in the Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe302 b:16.3 occ:1.00 FE A:HEC302 0.0 16.3 1.0 NC A:HEC302 2.0 16.3 1.0 NA A:HEC302 2.0 16.3 1.0 NE2 A:HIS225 2.1 17.2 1.0 ND A:HEC302 2.1 16.3 1.0 NB A:HEC302 2.1 16.3 1.0 SD A:MET168 2.4 16.6 1.0 CD2 A:HIS225 2.8 17.2 1.0 C4A A:HEC302 3.0 16.3 1.0 C4C A:HEC302 3.0 16.3 1.0 CE A:MET168 3.0 16.6 1.0 C1A A:HEC302 3.0 16.3 1.0 C1C A:HEC302 3.0 16.3 1.0 C1B A:HEC302 3.1 16.3 1.0 C1D A:HEC302 3.1 16.3 1.0 C4D A:HEC302 3.1 16.3 1.0 C4B A:HEC302 3.2 16.3 1.0 CE1 A:HIS225 3.2 17.2 1.0 CHB A:HEC302 3.4 16.3 1.0 CG A:MET168 3.4 16.6 1.0 CHD A:HEC302 3.4 16.3 1.0 CHA A:HEC302 3.4 16.3 1.0 CHC A:HEC302 3.5 16.3 1.0 CG A:HIS225 4.1 17.2 1.0 C3A A:HEC302 4.2 16.3 1.0 ND1 A:HIS225 4.2 17.2 1.0 C2A A:HEC302 4.2 16.3 1.0 C3C A:HEC302 4.2 16.3 1.0 C2C A:HEC302 4.2 16.3 1.0 C2B A:HEC302 4.3 16.3 1.0 C2D A:HEC302 4.3 16.3 1.0 CB A:MET168 4.3 16.6 1.0 C3D A:HEC302 4.3 16.3 1.0 C3B A:HEC302 4.4 16.3 1.0

Iron binding site 3 out of 21 in the Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe303 b:21.9 occ:1.00 FE A:HEC303 0.0 21.9 1.0 NC A:HEC303 2.0 21.9 1.0 NA A:HEC303 2.0 21.9 1.0 NB A:HEC303 2.0 21.9 1.0 ND A:HEC303 2.0 21.9 1.0 NE2 A:HIS151 2.1 22.7 1.0 NE2 A:HIS137 2.4 20.0 1.0 CE1 A:HIS137 2.7 20.0 1.0 CE1 A:HIS151 2.9 22.7 1.0 C1C A:HEC303 3.0 21.9 1.0 C1A A:HEC303 3.0 21.9 1.0 C4D A:HEC303 3.0 21.9 1.0 C4B A:HEC303 3.0 21.9 1.0 C4C A:HEC303 3.0 21.9 1.0 C1D A:HEC303 3.1 21.9 1.0 C4A A:HEC303 3.1 21.9 1.0 C1B A:HEC303 3.1 21.9 1.0 CD2 A:HIS151 3.1 22.7 1.0 CHC A:HEC303 3.4 21.9 1.0 CHA A:HEC303 3.4 21.9 1.0 CHD A:HEC303 3.4 21.9 1.0 CHB A:HEC303 3.5 21.9 1.0 CD2 A:HIS137 3.7 20.0 1.0 ND1 A:HIS137 4.0 20.0 1.0 ND1 A:HIS151 4.1 22.7 1.0 C2C A:HEC303 4.2 21.9 1.0 C2A A:HEC303 4.2 21.9 1.0 CG A:HIS151 4.2 22.7 1.0 C3C A:HEC303 4.2 21.9 1.0 C3B A:HEC303 4.2 21.9 1.0 C3D A:HEC303 4.2 21.9 1.0 C3A A:HEC303 4.2 21.9 1.0 C2D A:HEC303 4.3 21.9 1.0 C2B A:HEC303 4.3 21.9 1.0 CG A:HIS137 4.5 20.0 1.0 CE2 A:PHE135 4.8 17.4 1.0 CB A:ALA86 4.9 22.1 1.0

Iron binding site 4 out of 21 in the Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe304 b:28.6 occ:1.00 FE A:HEC304 0.0 28.6 1.0 NE2 A:HIS77 1.8 23.2 1.0 NA A:HEC304 2.0 28.6 1.0 NC A:HEC304 2.0 28.6 1.0 NE2 A:HIS63 2.0 28.4 1.0 NB A:HEC304 2.1 28.6 1.0 ND A:HEC304 2.1 28.6 1.0 CE1 A:HIS63 2.6 28.4 1.0 CD2 A:HIS77 2.8 23.2 1.0 CE1 A:HIS77 2.9 23.2 1.0 C1A A:HEC304 3.0 28.6 1.0 C1C A:HEC304 3.0 28.6 1.0 C4D A:HEC304 3.0 28.6 1.0 C4C A:HEC304 3.1 28.6 1.0 C4A A:HEC304 3.1 28.6 1.0 C4B A:HEC304 3.1 28.6 1.0 C1B A:HEC304 3.1 28.6 1.0 C1D A:HEC304 3.1 28.6 1.0 CD2 A:HIS63 3.3 28.4 1.0 CHA A:HEC304 3.4 28.6 1.0 CHC A:HEC304 3.4 28.6 1.0 CHD A:HEC304 3.4 28.6 1.0 CHB A:HEC304 3.5 28.6 1.0 ND1 A:HIS63 3.8 28.4 1.0 CG A:HIS77 3.9 23.2 1.0 ND1 A:HIS77 4.0 23.2 1.0 CG A:HIS63 4.2 28.4 1.0 C2A A:HEC304 4.2 28.6 1.0 C3A A:HEC304 4.3 28.6 1.0 C2C A:HEC304 4.3 28.6 1.0 C3C A:HEC304 4.3 28.6 1.0 C3D A:HEC304 4.3 28.6 1.0 C2B A:HEC304 4.3 28.6 1.0 C3B A:HEC304 4.3 28.6 1.0 C2D A:HEC304 4.3 28.6 1.0 CE2 A:PHE61 4.7 30.2 1.0 CG2 A:ILE154 5.0 31.3 1.0

Iron binding site 5 out of 21 in the Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1101 b:19.3 occ:1.00 FE B:HEC1101 0.0 19.3 1.0 NC B:HEC1101 2.0 19.3 1.0 NA B:HEC1101 2.0 19.3 1.0 NB B:HEC1101 2.1 19.3 1.0 ND B:HEC1101 2.1 19.3 1.0 NE2 A:HIS175 2.1 18.5 1.0 NE2 A:HIS140 2.1 20.1 1.0 CD2 A:HIS140 2.9 20.1 1.0 CE1 A:HIS175 3.0 18.5 1.0 C1A B:HEC1101 3.0 19.3 1.0 C1C B:HEC1101 3.0 19.3 1.0 C4C B:HEC1101 3.0 19.3 1.0 C4A B:HEC1101 3.0 19.3 1.0 C4D B:HEC1101 3.1 19.3 1.0 C1B B:HEC1101 3.1 19.3 1.0 C1D B:HEC1101 3.1 19.3 1.0 C4B B:HEC1101 3.1 19.3 1.0 CD2 A:HIS175 3.1 18.5 1.0 CE1 A:HIS140 3.2 20.1 1.0 CHA B:HEC1101 3.4 19.3 1.0 CHC B:HEC1101 3.4 19.3 1.0 CHD B:HEC1101 3.4 19.3 1.0 CHB B:HEC1101 3.4 19.3 1.0 ND1 A:HIS175 4.1 18.5 1.0 CG A:HIS140 4.1 20.1 1.0 C2A B:HEC1101 4.2 19.3 1.0 C3A B:HEC1101 4.2 19.3 1.0 CG A:HIS175 4.2 18.5 1.0 C2C B:HEC1101 4.2 19.3 1.0 C3C B:HEC1101 4.2 19.3 1.0 ND1 A:HIS140 4.2 20.1 1.0 C2B B:HEC1101 4.3 19.3 1.0 C3D B:HEC1101 4.3 19.3 1.0 C2D B:HEC1101 4.3 19.3 1.0 C3B B:HEC1101 4.3 19.3 1.0

Iron binding site 6 out of 21 in the Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1103 b:17.2 occ:1.00 FE1 B:SF41103 0.0 17.2 1.0 SG B:CYS772 1.9 15.9 1.0 S4 B:SF41103 2.3 17.2 1.0 S3 B:SF41103 2.3 17.2 1.0 S2 B:SF41103 2.3 17.2 1.0 FE2 B:SF41103 2.7 17.2 1.0 FE3 B:SF41103 2.7 17.2 1.0 FE4 B:SF41103 2.7 17.2 1.0 CB B:CYS772 3.3 15.9 1.0 N B:CYS772 3.5 15.9 1.0 CA B:CYS772 3.8 15.9 1.0 OD1 B:ASN770 3.8 18.5 1.0 S1 B:SF41103 3.9 17.2 1.0 N B:ASN773 3.9 15.1 1.0 C B:CYS772 4.2 15.9 1.0 N B:ALA774 4.2 14.4 1.0 CD B:PRO953 4.3 18.8 1.0 SG B:CYS952 4.3 17.3 1.0 SG B:CYS775 4.5 14.4 1.0 SG B:CYS769 4.5 17.5 1.0 C B:SER771 4.6 17.0 1.0 N B:CYS775 4.7 14.4 1.0 CB B:ALA774 4.7 14.4 1.0 N B:SER771 4.8 17.0 1.0 CA B:ASN773 4.8 15.1 1.0 CG B:PRO953 4.8 18.8 1.0 CA B:SER771 4.9 17.0 1.0 CA B:ALA774 4.9 14.4 1.0 C B:ASN773 5.0 15.1 1.0

Iron binding site 7 out of 21 in the Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1103 b:17.2 occ:1.00 FE2 B:SF41103 0.0 17.2 1.0 SG B:CYS952 1.9 17.3 1.0 S3 B:SF41103 2.3 17.2 1.0 S1 B:SF41103 2.3 17.2 1.0 S4 B:SF41103 2.3 17.2 1.0 FE1 B:SF41103 2.7 17.2 1.0 FE4 B:SF41103 2.7 17.2 1.0 FE3 B:SF41103 2.7 17.2 1.0 CB B:CYS952 3.0 17.3 1.0 CA B:CYS952 3.5 17.3 1.0 S2 B:SF41103 3.9 17.2 1.0 OG1 B:THR954 4.0 18.4 1.0 CB B:ALA956 4.3 15.2 1.0 SG B:CYS772 4.3 15.9 1.0 CD B:PRO953 4.3 18.8 1.0 C B:CYS952 4.4 17.3 1.0 SG B:CYS775 4.4 14.4 1.0 N B:PRO953 4.6 18.8 1.0 CB B:CYS775 4.6 14.4 1.0 N B:ALA956 4.7 15.2 1.0 N B:CYS952 4.7 17.3 1.0 SG B:CYS769 4.7 17.5 1.0 CG1 B:ILE957 4.9 14.7 1.0 CD1 B:ILE957 4.9 14.7 1.0

Iron binding site 8 out of 21 in the Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1103 b:17.2 occ:1.00 FE3 B:SF41103 0.0 17.2 1.0 SG B:CYS775 2.0 14.4 1.0 S2 B:SF41103 2.3 17.2 1.0 S4 B:SF41103 2.3 17.2 1.0 S1 B:SF41103 2.3 17.2 1.0 FE4 B:SF41103 2.7 17.2 1.0 FE1 B:SF41103 2.7 17.2 1.0 FE2 B:SF41103 2.7 17.2 1.0 CB B:CYS775 3.0 14.4 1.0 N B:CYS775 3.8 14.4 1.0 S3 B:SF41103 3.9 17.2 1.0 CA B:CYS775 4.0 14.4 1.0 CD1 B:ILE804 4.2 14.6 1.0 SG B:CYS772 4.3 15.9 1.0 SG B:CYS769 4.4 17.5 1.0 SG B:CYS952 4.6 17.3 1.0 CG1 B:ILE804 4.6 14.6 1.0 N B:ALA774 4.7 14.4 1.0 CD1 B:ILE957 4.8 14.7 1.0 N B:ASN773 4.8 15.1 1.0 CG1 B:VAL821 4.9 14.3 1.0 C B:ALA774 4.9 14.4 1.0 C B:CYS775 5.0 14.4 1.0

Iron binding site 9 out of 21 in the Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1103 b:17.2 occ:1.00 FE4 B:SF41103 0.0 17.2 1.0 SG B:CYS769 2.1 17.5 1.0 S1 B:SF41103 2.3 17.2 1.0 S2 B:SF41103 2.3 17.2 1.0 S3 B:SF41103 2.3 17.2 1.0 FE3 B:SF41103 2.7 17.2 1.0 FE2 B:SF41103 2.7 17.2 1.0 FE1 B:SF41103 2.7 17.2 1.0 CB B:CYS769 3.2 17.5 1.0 CA B:CYS769 3.6 17.5 1.0 S4 B:SF41103 3.9 17.2 1.0 SG B:CYS952 4.2 17.3 1.0 C B:CYS769 4.2 17.5 1.0 N B:ASN770 4.2 18.5 1.0 N B:SER771 4.3 17.0 1.0 CG2 B:VAL821 4.5 14.3 1.0 CB B:ALA956 4.5 15.2 1.0 SG B:CYS775 4.6 14.4 1.0 SG B:CYS772 4.6 15.9 1.0 OD1 B:ASN770 4.6 18.5 1.0 N B:CYS772 4.7 15.9 1.0 CA B:SER771 4.7 17.0 1.0 OG1 B:THR954 4.8 18.4 1.0 N B:CYS769 4.9 17.5 1.0

Iron binding site 10 out of 21 in the Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of the Air-Oxidized Photosynthetic Alternative Complex III From Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1104 b:15.7 occ:1.00 FE1 B:SF41104 0.0 15.7 1.0 SG B:CYS921 1.9 12.9 1.0 S4 B:SF41104 2.3 15.7 1.0 S2 B:SF41104 2.3 15.7 1.0 S3 B:SF41104 2.3 15.7 1.0 FE2 B:SF41104 2.7 15.7 1.0 FE4 B:SF41104 2.7 15.7 1.0 FE3 B:SF41104 2.7 15.7 1.0 CB B:CYS921 3.5 12.9 1.0 SG B:CYS948 3.7 15.7 1.0 N B:CYS921 3.7 12.9 1.0 S1 B:SF41104 3.9 15.7 1.0 ND2 B:ASN783 3.9 17.5 1.0 SG B:CYS779 4.0 15.0 1.0 CA B:CYS921 4.1 12.9 1.0 N B:ALA947 4.1 15.7 1.0 N B:CYS948 4.2 15.7 1.0 CB B:THR946 4.2 16.5 1.0 C B:PHE920 4.4 17.1 1.0 CB B:ALA947 4.4 15.7 1.0 CB B:CYS948 4.7 15.7 1.0 OG1 B:THR946 4.7 16.5 1.0 CA B:ALA947 4.7 15.7 1.0 SG B:CYS918 4.7 16.8 1.0 CB B:CYS779 4.9 15.0 1.0 CG B:ASN783 4.9 17.5 1.0 CA B:PHE920 4.9 17.1 1.0 O B:PHE920 4.9 17.1 1.0 C B:ALA947 5.0 15.7 1.0

Y.Shi, Y.Xin, C.Wang, R.E.Blankenship, F.Sun, X.Xu. Cryo-Em Structures of the Air-Oxidized and Dithionite-Reduced Photosynthetic Alternative Complex III From Roseiflexus Castenholzii . Sci Adv V. 6 A2739 2020.
ISSN: ESSN 2375-2548
PubMed: 32832681
DOI: 10.1126/SCIADV.ABA2739