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Iron in PDB 6lu1: Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution

Enzymatic activity of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution

All present enzymatic activity of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution:
1.97.1.12;

Other elements in 6lu1:

The structure of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution also contains other interesting chemical elements:

Magnesium (Mg) 82 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution (pdb code 6lu1). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution, PDB code: 6lu1:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 6lu1

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Iron binding site 1 out of 12 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe804

b:16.1
occ:1.00
 FE1 B:SF4804 0.0 16.1 1.0
S4 B:SF4804 2.3 16.1 1.0
S2 B:SF4804 2.3 16.1 1.0
S3 B:SF4804 2.3 16.1 1.0
FE3 B:SF4804 2.7 16.1 1.0
FE2 B:SF4804 2.7 16.1 1.0
FE4 B:SF4804 2.7 16.1 1.0
SG B:CYS574 3.1 11.7 1.0
CB B:CYS574 3.1 11.7 1.0
CA B:CYS574 3.8 11.7 1.0
S1 B:SF4804 3.9 16.1 1.0
CZ3 B:TRP673 4.2 9.2 1.0
N B:CYS574 4.3 11.7 1.0
CD1 A:ILE724 4.8 9.8 1.0
CB B:CYS565 4.9 13.0 1.0
CH2 B:TRP673 4.9 9.2 1.0
CG2 A:ILE724 4.9 9.8 1.0
CE3 B:TRP673 5.0 9.2 1.0

Iron binding site 2 out of 12 in 6lu1

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Iron binding site 2 out of 12 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe804

b:16.1
occ:1.00
 FE2 B:SF4804 0.0 16.1 1.0
S4 B:SF4804 2.3 16.1 1.0
S1 B:SF4804 2.3 16.1 1.0
S3 B:SF4804 2.3 16.1 1.0
FE3 B:SF4804 2.7 16.1 1.0
FE4 B:SF4804 2.7 16.1 1.0
FE1 B:SF4804 2.7 16.1 1.0
SG A:CYS587 3.0 7.0 1.0
CB A:CYS587 3.3 7.0 1.0
CA A:CYS587 3.8 7.0 1.0
S2 B:SF4804 3.9 16.1 1.0
CE3 B:TRP673 4.2 9.2 1.0
CZ3 B:TRP673 4.2 9.2 1.0
CB A:CYS578 4.3 9.5 1.0
N A:CYS587 4.5 7.0 1.0
SG A:CYS578 4.7 9.5 1.0
NH2 A:ARG728 4.8 9.1 1.0

Iron binding site 3 out of 12 in 6lu1

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Iron binding site 3 out of 12 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe804

b:16.1
occ:1.00
 FE3 B:SF4804 0.0 16.1 1.0
S2 B:SF4804 2.3 16.1 1.0
S1 B:SF4804 2.3 16.1 1.0
S4 B:SF4804 2.3 16.1 1.0
FE1 B:SF4804 2.7 16.1 1.0
FE4 B:SF4804 2.7 16.1 1.0
FE2 B:SF4804 2.7 16.1 1.0
SG A:CYS578 3.0 9.5 1.0
CB A:CYS578 3.7 9.5 1.0
S3 B:SF4804 3.9 16.1 1.0
CD1 A:ILE724 4.5 9.8 1.0
N B:PRO568 4.6 12.4 1.0
CB B:PRO568 4.6 12.4 1.0
C B:GLY567 4.7 11.9 1.0
O B:GLY567 4.7 11.9 1.0
CA B:PRO568 4.8 12.4 1.0
CD B:PRO568 4.8 12.4 1.0

Iron binding site 4 out of 12 in 6lu1

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Iron binding site 4 out of 12 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe804

b:16.1
occ:1.00
 FE4 B:SF4804 0.0 16.1 1.0
S1 B:SF4804 2.3 16.1 1.0
S3 B:SF4804 2.3 16.1 1.0
S2 B:SF4804 2.3 16.1 1.0
FE3 B:SF4804 2.7 16.1 1.0
FE2 B:SF4804 2.7 16.1 1.0
FE1 B:SF4804 2.7 16.1 1.0
SG B:CYS565 3.0 13.0 1.0
CB B:CYS565 3.5 13.0 1.0
S4 B:SF4804 3.9 16.1 1.0
SG A:CYS587 4.6 7.0 1.0
CD1 B:ILE708 4.8 9.6 1.0
CA B:CYS565 4.9 13.0 1.0

Iron binding site 5 out of 12 in 6lu1

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Iron binding site 5 out of 12 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:18.8
occ:1.00
 FE1 C:SF4101 0.0 18.8 1.0
S2 C:SF4101 2.3 18.8 1.0
S4 C:SF4101 2.3 18.8 1.0
S3 C:SF4101 2.3 18.8 1.0
FE2 C:SF4101 2.7 18.8 1.0
FE4 C:SF4101 2.7 18.8 1.0
FE3 C:SF4101 2.7 18.8 1.0
SG C:CYS50 3.1 10.2 1.0
N C:CYS50 3.2 10.2 1.0
N C:LYS51 3.4 10.5 1.0
S1 C:SF4101 3.9 18.8 1.0
CA C:CYS50 3.9 10.2 1.0
C C:CYS50 4.0 10.2 1.0
N C:GLY49 4.0 11.8 1.0
CB C:CYS50 4.0 10.2 1.0
C C:GLY49 4.1 11.8 1.0
CA C:GLY49 4.2 11.8 1.0
N C:ARG52 4.2 11.6 1.0
CA C:LYS51 4.3 10.5 1.0
CG2 C:VAL48 4.6 13.7 1.0
C C:LYS51 4.9 10.5 1.0
SG C:CYS47 4.9 16.3 1.0
CD C:PRO21 4.9 18.7 1.0

Iron binding site 6 out of 12 in 6lu1

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Iron binding site 6 out of 12 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:18.8
occ:1.00
 FE2 C:SF4101 0.0 18.8 1.0
S3 C:SF4101 2.3 18.8 1.0
S1 C:SF4101 2.3 18.8 1.0
S4 C:SF4101 2.3 18.8 1.0
FE4 C:SF4101 2.7 18.8 1.0
FE1 C:SF4101 2.7 18.8 1.0
FE3 C:SF4101 2.7 18.8 1.0
SG C:CYS20 3.0 19.5 1.0
S2 C:SF4101 3.9 18.8 1.0
CD C:PRO21 3.9 18.7 1.0
CB C:CYS20 4.0 19.5 1.0
CA C:CYS20 4.0 19.5 1.0
OG1 C:THR22 4.1 21.6 1.0
CG2 C:VAL24 4.5 21.3 1.0
N C:PRO21 4.6 18.7 1.0
CB C:VAL24 4.6 21.3 1.0
C C:CYS20 4.7 19.5 1.0
CG C:PRO21 4.9 18.7 1.0
SG C:CYS50 5.0 10.2 1.0

Iron binding site 7 out of 12 in 6lu1

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Iron binding site 7 out of 12 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:18.8
occ:1.00
 FE3 C:SF4101 0.0 18.8 1.0
S4 C:SF4101 2.3 18.8 1.0
S1 C:SF4101 2.3 18.8 1.0
S2 C:SF4101 2.3 18.8 1.0
FE4 C:SF4101 2.7 18.8 1.0
FE2 C:SF4101 2.7 18.8 1.0
FE1 C:SF4101 2.7 18.8 1.0
SG C:CYS53 3.0 14.0 1.0
CB C:CYS53 3.3 14.0 1.0
N C:CYS53 3.7 14.0 1.0
S3 C:SF4101 3.9 18.8 1.0
CA C:CYS53 4.1 14.0 1.0
N C:ARG52 4.4 11.6 1.0
CD1 C:LEU25 4.6 21.3 1.0
N C:LYS51 4.6 10.5 1.0
CA C:LYS51 4.7 10.5 1.0
C C:ARG52 4.7 11.6 1.0
CG2 C:VAL66 4.9 15.6 1.0
C C:LYS51 4.9 10.5 1.0
SG C:CYS20 5.0 19.5 1.0

Iron binding site 8 out of 12 in 6lu1

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Iron binding site 8 out of 12 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:18.8
occ:1.00
 FE4 C:SF4101 0.0 18.8 1.0
S1 C:SF4101 2.3 18.8 1.0
S2 C:SF4101 2.3 18.8 1.0
S3 C:SF4101 2.3 18.8 1.0
FE2 C:SF4101 2.7 18.8 1.0
FE3 C:SF4101 2.7 18.8 1.0
FE1 C:SF4101 2.7 18.8 1.0
SG C:CYS47 3.1 16.3 1.0
S4 C:SF4101 3.9 18.8 1.0
CB C:CYS47 3.9 16.3 1.0
CG2 C:VAL4 4.3 20.9 1.0
N C:GLY49 4.4 11.8 1.0
CA C:CYS47 4.4 16.3 1.0
CA C:GLY49 4.7 11.8 1.0
N C:VAL48 4.7 13.7 1.0
CG2 C:VAL66 4.8 15.6 1.0
CG2 C:VAL24 4.8 21.3 1.0
CG1 C:VAL24 4.9 21.3 1.0
CB C:VAL24 4.9 21.3 1.0
CG1 C:VAL66 5.0 15.6 1.0

Iron binding site 9 out of 12 in 6lu1

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Iron binding site 9 out of 12 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:41.7
occ:1.00
 FE1 C:SF4102 0.0 41.7 1.0
S3 C:SF4102 2.3 41.7 1.0
S2 C:SF4102 2.3 41.7 1.0
S4 C:SF4102 2.3 41.7 1.0
FE4 C:SF4102 2.7 41.7 1.0
FE3 C:SF4102 2.7 41.7 1.0
FE2 C:SF4102 2.7 41.7 1.0
SG C:CYS57 3.1 25.4 1.0
CB C:CYS57 3.8 25.4 1.0
S1 C:SF4102 3.9 41.7 1.0
CA C:CYS57 3.9 25.4 1.0
CD C:PRO58 4.0 29.4 1.0
CG2 C:ILE64 4.5 20.2 1.0
N C:PRO58 4.8 29.4 1.0
CB C:SER63 4.8 24.9 1.0
C C:CYS57 4.8 25.4 1.0
N C:CYS57 4.8 25.4 1.0

Iron binding site 10 out of 12 in 6lu1

Go back to Iron Binding Sites List in 6lu1
Iron binding site 10 out of 12 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:41.7
occ:1.00
 FE2 C:SF4102 0.0 41.7 1.0
S1 C:SF4102 2.3 41.7 1.0
S4 C:SF4102 2.3 41.7 1.0
S3 C:SF4102 2.3 41.7 1.0
FE3 C:SF4102 2.7 41.7 1.0
FE4 C:SF4102 2.7 41.7 1.0
FE1 C:SF4102 2.7 41.7 1.0
SG C:CYS16 3.0 23.1 1.0
CB C:CYS16 3.8 23.1 1.0
N C:CYS16 3.8 23.1 1.0
S2 C:SF4102 3.9 41.7 1.0
N C:GLN15 4.2 26.5 1.0
CA C:CYS16 4.4 23.1 1.0
N C:THR14 4.7 27.2 1.0
CB C:ALA39 4.8 31.1 1.0
C C:GLN15 4.8 26.5 1.0
CA C:THR14 4.9 27.2 1.0
C C:THR14 4.9 27.2 1.0
CA C:GLN15 5.0 26.5 1.0

Reference:

O.Coruh, A.Frank, H.Tanaka, A.Kawamoto, E.El-Mohsnawy, T.Kato, K.Namba, C.Gerle, M.M.Nowaczyk, G.Kurisu. Cryo-Em Structure of A Functional Monomeric Photosystem I From Thermosynechococcus Elongatus Reveals Red Chlorophyll Cluster. Commun Biol V. 4 304 2021.
ISSN: ESSN 2399-3642
PubMed: 33686186
DOI: 10.1038/S42003-021-01808-9
Page generated: Wed Aug 7 01:40:24 2024

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