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Iron in PDB 6lum: Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2

Iron Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 33;

Binding sites:

The binding sites of Iron atom in the Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2 (pdb code 6lum). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 33 binding sites of Iron where determined in the Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2, PDB code: 6lum:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 33 in 6lum

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Iron binding site 1 out of 33 in the Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2


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Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:28.7
occ:1.00
 FE D:HEM201 0.0 28.7 1.0
ND D:HEM201 2.0 28.7 1.0
NB D:HEM201 2.0 28.7 1.0
NC D:HEM201 2.0 28.7 1.0
NA D:HEM201 2.0 28.7 1.0
NE2 D:HIS107 2.5 28.7 1.0
CE1 C:HIS87 2.5 28.7 1.0
CD2 D:HIS107 2.7 28.7 1.0
C1A D:HEM201 3.0 28.7 1.0
C1C D:HEM201 3.0 28.7 1.0
C4D D:HEM201 3.0 28.7 1.0
C4B D:HEM201 3.0 28.7 1.0
C4C D:HEM201 3.0 28.7 1.0
C1D D:HEM201 3.0 28.7 1.0
C1B D:HEM201 3.1 28.7 1.0
C4A D:HEM201 3.1 28.7 1.0
ND1 C:HIS87 3.2 28.7 1.0
CHA D:HEM201 3.4 28.7 1.0
CHC D:HEM201 3.4 28.7 1.0
CHD D:HEM201 3.4 28.7 1.0
CHB D:HEM201 3.4 28.7 1.0
NE2 C:HIS87 3.6 28.7 1.0
CE1 D:HIS107 3.7 28.7 1.0
CG D:HIS107 4.1 28.7 1.0
C2A D:HEM201 4.2 28.7 1.0
C2C D:HEM201 4.2 28.7 1.0
C3D D:HEM201 4.2 28.7 1.0
C3C D:HEM201 4.2 28.7 1.0
C3A D:HEM201 4.2 28.7 1.0
C3B D:HEM201 4.2 28.7 1.0
C2D D:HEM201 4.2 28.7 1.0
C2B D:HEM201 4.2 28.7 1.0
CG C:HIS87 4.4 28.7 1.0
ND1 D:HIS107 4.5 28.7 1.0
CD2 C:HIS87 4.7 28.7 1.0
CE1 C:HIS33 4.9 28.7 1.0

Iron binding site 2 out of 33 in 6lum

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Iron binding site 2 out of 33 in the Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe202

b:33.5
occ:1.00
 FE D:HEM202 0.0 33.5 1.0
NA D:HEM202 1.9 33.5 1.0
NE2 C:HIS47 1.9 8.4 1.0
NC D:HEM202 1.9 33.5 1.0
NB D:HEM202 2.0 33.5 1.0
ND D:HEM202 2.1 33.5 1.0
CD2 C:HIS47 2.2 8.4 1.0
CE1 D:HIS65 2.6 7.4 1.0
C1A D:HEM202 2.9 33.5 1.0
C4A D:HEM202 2.9 33.5 1.0
C1C D:HEM202 2.9 33.5 1.0
C4C D:HEM202 3.0 33.5 1.0
C4B D:HEM202 3.0 33.5 1.0
C4D D:HEM202 3.1 33.5 1.0
C1D D:HEM202 3.1 33.5 1.0
C1B D:HEM202 3.1 33.5 1.0
CE1 C:HIS47 3.1 8.4 1.0
CHC D:HEM202 3.3 33.5 1.0
CHA D:HEM202 3.4 33.5 1.0
CHD D:HEM202 3.4 33.5 1.0
CHB D:HEM202 3.5 33.5 1.0
CG C:HIS47 3.5 8.4 1.0
ND1 D:HIS65 3.5 7.4 1.0
NE2 D:HIS65 3.5 7.4 1.0
ND1 C:HIS47 3.9 8.4 1.0
C2A D:HEM202 4.0 33.5 1.0
C3A D:HEM202 4.1 33.5 1.0
C2C D:HEM202 4.2 33.5 1.0
C3C D:HEM202 4.2 33.5 1.0
C3B D:HEM202 4.3 33.5 1.0
C2D D:HEM202 4.3 33.5 1.0
C2B D:HEM202 4.3 33.5 1.0
C3D D:HEM202 4.3 33.5 1.0
CD2 D:HIS65 4.6 7.4 1.0
CG D:HIS65 4.6 7.4 1.0
CB C:HIS47 4.7 8.4 1.0

Iron binding site 3 out of 33 in 6lum

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Iron binding site 3 out of 33 in the Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:7.4
occ:1.00
 FE1 B:FES301 0.0 7.4 1.0
S1 B:FES301 2.2 7.4 1.0
S2 B:FES301 2.2 7.4 1.0
SG B:CYS82 2.7 6.5 1.0
SG B:CYS77 2.8 9.8 1.0
FE2 B:FES301 3.0 7.4 1.0
N B:CYS82 3.6 6.5 1.0
CB B:CYS77 3.7 9.8 1.0
N B:CYS77 3.7 9.8 1.0
N B:GLY83 3.9 10.3 1.0
CB B:CYS82 4.0 6.5 1.0
N B:SER84 4.1 28.7 1.0
CA B:CYS82 4.2 6.5 1.0
CA B:CYS77 4.2 9.8 1.0
OG B:SER84 4.2 28.7 1.0
OD1 B:ASP85 4.3 9.2 1.0
C B:CYS82 4.5 6.5 1.0
CB B:SER84 4.5 28.7 1.0
N B:SER76 4.5 6.7 1.0
C B:VAL81 4.7 7.0 1.0
CA B:VAL81 4.7 7.0 1.0
O B:CYS77 4.7 9.8 1.0
C B:CYS77 4.8 9.8 1.0
C B:SER76 4.8 6.7 1.0
CA B:GLY83 4.8 10.3 1.0
CG B:ASP85 4.9 9.2 1.0
SG B:CYS97 4.9 9.6 1.0
CA B:SER84 5.0 28.7 1.0
O B:GLY80 5.0 11.0 1.0

Iron binding site 4 out of 33 in 6lum

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Iron binding site 4 out of 33 in the Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:7.4
occ:1.00
 FE2 B:FES301 0.0 7.4 1.0
S2 B:FES301 2.2 7.4 1.0
S1 B:FES301 2.2 7.4 1.0
OD1 B:ASP85 2.4 9.2 1.0
OD2 B:ASP85 2.6 9.2 1.0
SG B:CYS97 2.7 9.6 1.0
CG B:ASP85 2.8 9.2 1.0
CB B:CYS97 2.9 9.6 1.0
FE1 B:FES301 3.0 7.4 1.0
N B:CYS97 4.1 9.6 1.0
CA B:CYS97 4.1 9.6 1.0
CB B:ASP85 4.2 9.2 1.0
CG B:LEU95 4.4 28.7 1.0
N B:ASP85 4.5 9.2 1.0
CD2 B:LEU95 4.8 28.7 1.0
SG B:CYS77 4.8 9.8 1.0
N B:SER84 4.9 28.7 1.0
CA B:ASP85 4.9 9.2 1.0
O B:LEU95 4.9 28.7 1.0

Iron binding site 5 out of 33 in 6lum

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Iron binding site 5 out of 33 in the Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe302

b:28.7
occ:1.00
 FE1 B:SF4302 0.0 28.7 1.0
S4 B:SF4302 2.1 28.7 1.0
S3 B:SF4302 2.1 28.7 1.0
S2 B:SF4302 2.1 28.7 1.0
SG B:CYS180 2.5 16.0 1.0
CB B:CYS180 2.9 16.0 1.0
FE2 B:SF4302 3.0 28.7 1.0
FE4 B:SF4302 3.0 28.7 1.0
FE3 B:SF4302 3.0 28.7 1.0
S1 B:SF4302 3.7 28.7 1.0
N B:CYS180 3.8 16.0 1.0
CA B:CYS180 3.9 16.0 1.0
CB B:ALA197 4.2 5.6 1.0
CA B:ALA197 4.7 5.6 1.0
N B:CYS179 4.8 28.7 1.0
N B:THR181 4.8 28.7 1.0
C B:CYS179 4.9 28.7 1.0
C B:CYS180 4.9 16.0 1.0
N B:ALA178 5.0 13.9 1.0
CG2 B:VAL246 5.0 28.7 1.0

Iron binding site 6 out of 33 in 6lum

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Iron binding site 6 out of 33 in the Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe302

b:28.7
occ:1.00
 FE2 B:SF4302 0.0 28.7 1.0
S4 B:SF4302 2.1 28.7 1.0
S3 B:SF4302 2.1 28.7 1.0
S1 B:SF4302 2.1 28.7 1.0
SG B:CYS177 2.4 28.7 1.0
FE4 B:SF4302 3.0 28.7 1.0
FE1 B:SF4302 3.0 28.7 1.0
FE3 B:SF4302 3.0 28.7 1.0
N B:CYS177 3.6 28.7 1.0
S2 B:SF4302 3.7 28.7 1.0
CB B:CYS177 3.8 28.7 1.0
N B:ALA178 4.0 13.9 1.0
CD B:PRO241 4.1 7.4 1.0
CA B:CYS177 4.1 28.7 1.0
N B:CYS179 4.2 28.7 1.0
C B:CYS177 4.4 28.7 1.0
CG1 B:ILE175 4.5 5.3 1.0
N B:LEU176 4.6 5.5 1.0
CB B:CYS179 4.6 28.7 1.0
CG B:PRO241 4.6 7.4 1.0
C B:LEU176 4.7 5.5 1.0
N B:CYS180 4.8 16.0 1.0
CA B:LEU176 4.8 5.5 1.0
CA B:ALA178 4.9 13.9 1.0
CA B:CYS179 4.9 28.7 1.0

Iron binding site 7 out of 33 in 6lum

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Iron binding site 7 out of 33 in the Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe302

b:28.7
occ:1.00
 FE3 B:SF4302 0.0 28.7 1.0
S2 B:SF4302 2.1 28.7 1.0
S1 B:SF4302 2.1 28.7 1.0
S4 B:SF4302 2.1 28.7 1.0
SG B:CYS240 2.4 28.7 1.0
FE2 B:SF4302 3.0 28.7 1.0
FE1 B:SF4302 3.0 28.7 1.0
CB B:CYS240 3.0 28.7 1.0
FE4 B:SF4302 3.0 28.7 1.0
CA B:CYS240 3.7 28.7 1.0
S3 B:SF4302 3.7 28.7 1.0
CD B:PRO241 4.2 7.4 1.0
CD1 B:ILE244 4.2 8.7 1.0
C B:CYS240 4.4 28.7 1.0
N B:PRO241 4.5 7.4 1.0
CB B:ILE244 4.6 8.7 1.0
CG1 B:ILE244 4.7 8.7 1.0
CG2 B:VAL246 4.7 28.7 1.0
N B:ARG242 4.8 6.7 1.0
N B:CYS240 4.9 28.7 1.0
CG B:ARG242 4.9 6.7 1.0

Iron binding site 8 out of 33 in 6lum

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Iron binding site 8 out of 33 in the Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe302

b:28.7
occ:1.00
 FE4 B:SF4302 0.0 28.7 1.0
S3 B:SF4302 2.1 28.7 1.0
S1 B:SF4302 2.1 28.7 1.0
S2 B:SF4302 2.1 28.7 1.0
SG B:CYS174 2.6 5.0 1.0
FE2 B:SF4302 3.0 28.7 1.0
FE1 B:SF4302 3.0 28.7 1.0
FE3 B:SF4302 3.0 28.7 1.0
CB B:CYS174 3.3 5.0 1.0
CA B:CYS174 3.5 5.0 1.0
S4 B:SF4302 3.7 28.7 1.0
N B:LEU176 3.9 5.5 1.0
N B:ILE175 4.0 5.3 1.0
C B:CYS174 4.1 5.0 1.0
CA B:LEU176 4.5 5.5 1.0
CD1 B:ILE244 4.6 8.7 1.0
N B:CYS174 4.8 5.0 1.0
N B:CYS177 4.8 28.7 1.0
CB B:ALA197 4.9 5.6 1.0
C B:ILE175 4.9 5.3 1.0

Iron binding site 9 out of 33 in 6lum

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Iron binding site 9 out of 33 in the Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe303

b:38.7
occ:1.00
 FE1 B:F3S303 0.0 38.7 1.0
SG B:CYS184 2.0 16.2 1.0
S3 B:F3S303 2.2 38.7 1.0
S1 B:F3S303 2.2 38.7 1.0
S2 B:F3S303 2.2 38.7 1.0
FE3 B:F3S303 3.1 38.7 1.0
FE4 B:F3S303 3.1 38.7 1.0
CB B:CYS184 3.2 16.2 1.0
CA B:CYS184 3.6 16.2 1.0
S4 B:F3S303 4.2 38.7 1.0
CD B:PRO185 4.3 12.8 1.0
O B:THR233 4.4 10.5 1.0
C B:CYS184 4.5 16.2 1.0
N B:PRO185 4.6 12.8 1.0
CG2 B:VAL186 4.6 28.7 1.0
CE2 B:TYR193 4.6 28.7 1.0
CG B:PRO196 4.8 8.8 1.0
N B:CYS184 4.8 16.2 1.0
CB B:THR233 4.8 10.5 1.0
OH B:TYR193 4.9 28.7 1.0
CB B:VAL186 4.9 28.7 1.0
N B:VAL186 4.9 28.7 1.0
CD B:PRO196 5.0 8.8 1.0

Iron binding site 10 out of 33 in 6lum

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Iron binding site 10 out of 33 in the Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe303

b:38.7
occ:1.00
 FE3 B:F3S303 0.0 38.7 1.0
S3 B:F3S303 2.2 38.7 1.0
SG B:CYS230 2.2 11.4 1.0
S4 B:F3S303 2.2 38.7 1.0
S1 B:F3S303 2.2 38.7 1.0
FE4 B:F3S303 3.0 38.7 1.0
FE1 B:F3S303 3.1 38.7 1.0
O B:THR233 3.2 10.5 1.0
CB B:CYS230 3.5 11.4 1.0
N B:THR232 3.7 8.8 1.0
CA B:CYS230 3.8 11.4 1.0
N B:THR233 3.8 10.5 1.0
CA B:THR232 4.1 8.8 1.0
N B:ARG231 4.1 10.6 1.0
S2 B:F3S303 4.1 38.7 1.0
C B:CYS230 4.2 11.4 1.0
C B:THR233 4.2 10.5 1.0
C B:THR232 4.4 8.8 1.0
CA B:THR233 4.5 10.5 1.0
C B:ARG231 4.6 10.6 1.0
OH B:TYR193 4.7 28.7 1.0
CD1 B:ILE250 4.7 10.4 1.0
SG B:CYS184 4.7 16.2 1.0
CB B:THR233 4.9 10.5 1.0
SG B:CYS236 4.9 7.5 1.0
CA B:ARG231 4.9 10.6 1.0

Reference:

Y.Gao, H.Gong, X.Zhou, Y.Xiao, W.Wang, W.Ji, Q.Wang, Z.Rao. Structure of Mycobacterium Smegmatis Succinate Dehydrogenase 2 To Be Published.
Page generated: Wed Aug 6 09:37:49 2025

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