Iron in PDB 6lvc: Structure of Dimethylformamidase, Dimer

All present enzymatic activity of Structure of Dimethylformamidase, Dimer:
3.5.1.56;

The binding sites of Iron atom in the Structure of Dimethylformamidase, Dimer (pdb code 6lvc). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of Dimethylformamidase, Dimer, PDB code: 6lvc:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Structure of Dimethylformamidase, Dimer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Dimethylformamidase, Dimer within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe801 b:46.5 occ:1.00 OH A:TYR440 1.8 29.2 1.0 OE1 A:GLU521 1.9 28.4 1.0 OE2 A:GLU521 2.0 28.4 1.0 OH A:TYR399 2.0 30.3 1.0 O A:HOH901 2.1 32.7 1.0 CD A:GLU521 2.2 28.4 1.0 CZ A:TYR440 2.9 29.2 1.0 CE2 A:TYR440 3.3 29.2 1.0 CZ A:TYR399 3.3 30.3 1.0 CG A:GLU521 3.7 28.4 1.0 NE2 A:HIS519 3.9 32.3 1.0 CE2 A:TYR399 4.1 30.3 1.0 CE1 A:TYR399 4.1 30.3 1.0 CE1 A:TYR440 4.1 29.2 1.0 ND2 A:ASN547 4.2 27.6 1.0 OE2 A:GLU657 4.3 32.8 1.0 CE1 A:HIS519 4.5 32.3 1.0 CB A:GLU521 4.5 28.4 1.0 CD2 A:TYR440 4.6 29.2 1.0 CZ2 A:TRP473 4.9 39.3 1.0 CE1 A:TYR522 4.9 24.8 1.0

Iron binding site 2 out of 2 in the Structure of Dimethylformamidase, Dimer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Dimethylformamidase, Dimer within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe801 b:46.1 occ:1.00 OH C:TYR440 1.8 29.0 1.0 OE1 C:GLU521 1.9 28.4 1.0 OE2 C:GLU521 2.0 28.4 1.0 OH C:TYR399 2.0 30.0 1.0 O C:HOH901 2.1 32.7 1.0 CD C:GLU521 2.2 28.4 1.0 CZ C:TYR440 2.9 29.0 1.0 CE2 C:TYR440 3.3 29.0 1.0 CZ C:TYR399 3.3 30.0 1.0 CG C:GLU521 3.7 28.4 1.0 NE2 C:HIS519 3.9 32.0 1.0 CE2 C:TYR399 4.1 30.0 1.0 CE1 C:TYR399 4.1 30.0 1.0 CE1 C:TYR440 4.1 29.0 1.0 ND2 C:ASN547 4.2 27.5 1.0 OE2 C:GLU657 4.3 32.5 1.0 CE1 C:HIS519 4.5 32.0 1.0 CB C:GLU521 4.5 28.4 1.0 CD2 C:TYR440 4.6 29.0 1.0 CZ2 C:TRP473 4.9 39.0 1.0 CE1 C:TYR522 4.9 24.6 1.0

C.K.Arya, S.Yadav, J.Fine, A.Casanal, G.Chopra, G.Ramanathan, K.R.Vinothkumar, R.Subramanian. A 2-Tyr-1-Carboxylate Mononuclear Iron Center Is the Active Site of Dimethylformamidase. Angew.Chem.Int.Ed.Engl. 2020.
ISSN: ESSN 1521-3773
PubMed: 32452120
DOI: 10.1002/ANIE.202005332