Iron in PDB 6ly5: Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex

The structure of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex also contains other interesting chemical elements:

Magnesium

(Mg)

360 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex (pdb code 6ly5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex, PDB code: 6ly5:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ b:Fe803 b:33.7 occ:1.00 FE1 b:SF4803 0.0 33.7 1.0 SG b:CYS567 2.1 21.2 1.0 S2 b:SF4803 2.3 33.7 1.0 S4 b:SF4803 2.3 33.7 1.0 S3 b:SF4803 2.3 33.7 1.0 FE3 b:SF4803 2.7 33.7 1.0 FE4 b:SF4803 2.7 33.7 1.0 FE2 b:SF4803 2.7 33.7 1.0 CB b:CYS567 3.5 21.2 1.0 S1 b:SF4803 3.8 33.7 1.0 CD1 a:ILE726 3.9 16.7 1.0 CA b:CYS567 4.1 21.2 1.0 N b:CYS567 4.2 21.2 1.0 SG b:CYS558 4.2 21.1 1.0 CZ3 b:TRP666 4.3 23.6 1.0 CB b:CYS558 4.7 21.1 1.0 CG1 a:ILE726 4.8 16.7 1.0 C b:THR566 4.8 19.5 1.0 CG2 a:ILE726 4.8 16.7 1.0 SG a:CYS580 4.9 20.4 1.0

Iron binding site 2 out of 12 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ b:Fe803 b:33.7 occ:1.00 FE2 b:SF4803 0.0 33.7 1.0 S4 b:SF4803 2.3 33.7 1.0 S1 b:SF4803 2.3 33.7 1.0 S3 b:SF4803 2.3 33.7 1.0 FE4 b:SF4803 2.7 33.7 1.0 FE1 b:SF4803 2.7 33.7 1.0 FE3 b:SF4803 2.7 33.7 1.0 SG a:CYS589 2.7 20.4 1.0 CB a:CYS589 3.7 20.4 1.0 S2 b:SF4803 3.9 33.7 1.0 CA a:CYS589 4.0 20.4 1.0 CB a:CYS580 4.2 20.4 1.0 N a:CYS589 4.3 20.4 1.0 CE3 b:TRP666 4.4 23.6 1.0 CZ3 b:TRP666 4.4 23.6 1.0 SG a:CYS580 4.5 20.4 1.0 SG b:CYS558 4.5 21.1 1.0 CD1 b:ILE701 4.5 17.4 1.0 SG b:CYS567 4.5 21.2 1.0

Iron binding site 3 out of 12 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ b:Fe803 b:33.7 occ:1.00 FE3 b:SF4803 0.0 33.7 1.0 S2 b:SF4803 2.2 33.7 1.0 S1 b:SF4803 2.3 33.7 1.0 S4 b:SF4803 2.3 33.7 1.0 SG a:CYS580 2.7 20.4 1.0 FE1 b:SF4803 2.7 33.7 1.0 FE4 b:SF4803 2.7 33.7 1.0 FE2 b:SF4803 2.7 33.7 1.0 CB a:CYS580 3.5 20.4 1.0 S3 b:SF4803 3.9 33.7 1.0 N b:PRO561 4.1 18.9 1.0 C b:GLY560 4.2 18.8 1.0 SG b:CYS558 4.2 21.1 1.0 CD b:PRO561 4.2 18.9 1.0 CB b:PRO561 4.3 18.9 1.0 CA a:GLY582 4.3 19.6 1.0 N a:GLY582 4.3 19.6 1.0 CA b:GLY560 4.5 18.8 1.0 CG b:PRO561 4.5 18.9 1.0 CA b:PRO561 4.5 18.9 1.0 O b:GLY560 4.6 18.8 1.0 C a:GLY582 4.6 19.6 1.0 CD1 a:ILE726 4.7 16.7 1.0 SG b:CYS567 4.7 21.2 1.0 CA a:CYS580 4.9 20.4 1.0 N a:PRO583 5.0 21.6 1.0 CD a:PRO583 5.0 21.6 1.0

Iron binding site 4 out of 12 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ b:Fe803 b:33.7 occ:1.00 FE4 b:SF4803 0.0 33.7 1.0 SG b:CYS558 1.9 21.1 1.0 S1 b:SF4803 2.2 33.7 1.0 S3 b:SF4803 2.3 33.7 1.0 S2 b:SF4803 2.3 33.7 1.0 FE3 b:SF4803 2.7 33.7 1.0 FE2 b:SF4803 2.7 33.7 1.0 FE1 b:SF4803 2.7 33.7 1.0 CB b:CYS558 3.2 21.1 1.0 S4 b:SF4803 3.8 33.7 1.0 CD1 b:ILE701 4.5 17.4 1.0 SG b:CYS567 4.5 21.2 1.0 CB a:PRO583 4.5 21.6 1.0 CA b:CYS558 4.5 21.1 1.0 N b:GLY560 4.6 18.8 1.0 CD a:PRO583 4.6 21.6 1.0 CA b:GLY560 4.6 18.8 1.0 N a:PRO583 4.7 21.6 1.0 N b:CYS558 4.8 21.1 1.0 C b:GLY560 4.8 18.8 1.0 CA a:PRO583 4.9 21.6 1.0 CG a:PRO583 4.9 21.6 1.0 O b:GLY560 4.9 18.8 1.0

Iron binding site 5 out of 12 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe101 b:32.8 occ:1.00 FE1 c:SF4101 0.0 32.8 1.0 S2 c:SF4101 2.3 32.8 1.0 S4 c:SF4101 2.3 32.8 1.0 S3 c:SF4101 2.3 32.8 1.0 FE2 c:SF4101 2.7 32.8 1.0 FE4 c:SF4101 2.7 32.8 1.0 FE3 c:SF4101 2.7 32.8 1.0 SG c:CYS51 3.0 21.7 1.0 N c:CYS51 3.4 21.7 1.0 N c:LYS52 3.5 22.3 1.0 S1 c:SF4101 3.9 32.8 1.0 CA c:CYS51 4.0 21.7 1.0 CB c:CYS51 4.0 21.7 1.0 C c:CYS51 4.1 21.7 1.0 N c:ARG53 4.1 23.0 1.0 N c:GLY50 4.2 19.8 1.0 C c:GLY50 4.2 19.8 1.0 CD c:PRO22 4.2 24.8 1.0 CA c:LYS52 4.3 22.3 1.0 SG c:CYS54 4.4 23.5 1.0 CG2 c:VAL49 4.5 22.8 1.0 CA c:GLY50 4.5 19.8 1.0 SG c:CYS48 4.6 27.9 1.0 C c:LYS52 4.6 22.3 1.0 CG c:PRO22 4.7 24.8 1.0 SG c:CYS21 4.8 27.9 1.0 CB c:ARG53 5.0 23.0 1.0 N c:CYS54 5.0 23.5 1.0

Iron binding site 6 out of 12 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe101 b:32.8 occ:1.00 FE2 c:SF4101 0.0 32.8 1.0 SG c:CYS21 2.2 27.9 1.0 S4 c:SF4101 2.3 32.8 1.0 S1 c:SF4101 2.3 32.8 1.0 S3 c:SF4101 2.3 32.8 1.0 FE1 c:SF4101 2.7 32.8 1.0 FE4 c:SF4101 2.7 32.8 1.0 FE3 c:SF4101 2.7 32.8 1.0 CB c:CYS21 3.2 27.9 1.0 CA c:CYS21 3.6 27.9 1.0 CD c:PRO22 3.7 24.8 1.0 S2 c:SF4101 3.9 32.8 1.0 N c:PRO22 4.3 24.8 1.0 C c:CYS21 4.4 27.9 1.0 CG2 c:VAL25 4.4 26.8 1.0 SG c:CYS54 4.5 23.5 1.0 CB c:VAL25 4.6 26.8 1.0 OG1 c:THR23 4.6 25.9 1.0 CD1 c:LEU26 4.7 27.3 1.0 N c:CYS21 4.7 27.9 1.0 CG c:PRO22 4.7 24.8 1.0 CB c:CYS54 4.9 23.5 1.0 N c:THR23 5.0 25.9 1.0

Iron binding site 7 out of 12 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe101 b:32.8 occ:1.00 FE3 c:SF4101 0.0 32.8 1.0 SG c:CYS54 2.1 23.5 1.0 S1 c:SF4101 2.3 32.8 1.0 S2 c:SF4101 2.3 32.8 1.0 S4 c:SF4101 2.3 32.8 1.0 FE2 c:SF4101 2.7 32.8 1.0 FE1 c:SF4101 2.7 32.8 1.0 FE4 c:SF4101 2.7 32.8 1.0 CB c:CYS54 3.4 23.5 1.0 S3 c:SF4101 3.9 32.8 1.0 CG2 c:VAL67 4.0 21.6 1.0 N c:CYS54 4.1 23.5 1.0 CA c:CYS54 4.4 23.5 1.0 CA c:LYS52 4.5 22.3 1.0 N c:LYS52 4.5 22.3 1.0 CD1 c:LEU26 4.6 27.3 1.0 N c:ARG53 4.6 23.0 1.0 SG c:CYS48 4.7 27.9 1.0 SG c:CYS21 4.7 27.9 1.0 C c:LYS52 4.8 22.3 1.0

Iron binding site 8 out of 12 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe101 b:32.8 occ:1.00 FE4 c:SF4101 0.0 32.8 1.0 S3 c:SF4101 2.3 32.8 1.0 S1 c:SF4101 2.3 32.8 1.0 S2 c:SF4101 2.3 32.8 1.0 SG c:CYS48 2.4 27.9 1.0 FE1 c:SF4101 2.7 32.8 1.0 FE2 c:SF4101 2.7 32.8 1.0 FE3 c:SF4101 2.7 32.8 1.0 CB c:CYS48 3.5 27.9 1.0 CA c:CYS48 3.8 27.9 1.0 S4 c:SF4101 3.9 32.8 1.0 N c:GLY50 4.1 19.8 1.0 N c:VAL49 4.1 22.8 1.0 CG2 c:VAL25 4.2 26.8 1.0 C c:CYS48 4.4 27.9 1.0 SG c:CYS21 4.4 27.9 1.0 CB c:VAL25 4.5 26.8 1.0 CA c:GLY50 4.6 19.8 1.0 CG2 c:VAL5 4.7 23.5 1.0 SG c:CYS54 4.8 23.5 1.0 CG1 c:VAL25 4.8 26.8 1.0 OG1 c:THR23 4.9 25.9 1.0 N c:CYS51 4.9 21.7 1.0

Iron binding site 9 out of 12 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe102 b:38.9 occ:1.00 FE1 c:SF4102 0.0 38.9 1.0 S4 c:SF4102 2.3 38.9 1.0 S2 c:SF4102 2.3 38.9 1.0 S3 c:SF4102 2.3 38.9 1.0 FE4 c:SF4102 2.7 38.9 1.0 FE2 c:SF4102 2.7 38.9 1.0 FE3 c:SF4102 2.7 38.9 1.0 SG c:CYS58 3.0 25.7 1.0 CB c:CYS58 3.3 25.7 1.0 CA c:CYS58 3.5 25.7 1.0 S1 c:SF4102 3.9 38.9 1.0 CD c:PRO59 3.9 24.2 1.0 N c:PRO59 4.3 24.2 1.0 C c:CYS58 4.3 25.7 1.0 CB c:SER64 4.3 22.5 1.0 N c:CYS58 4.6 25.7 1.0 OG c:SER64 4.8 22.5 1.0 CG1 c:VAL65 4.8 21.2 1.0 CB c:CYS17 4.9 30.5 1.0 N c:VAL65 5.0 21.2 1.0

Iron binding site 10 out of 12 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe102 b:38.9 occ:1.00 FE2 c:SF4102 0.0 38.9 1.0 S1 c:SF4102 2.3 38.9 1.0 S3 c:SF4102 2.3 38.9 1.0 S4 c:SF4102 2.3 38.9 1.0 FE1 c:SF4102 2.7 38.9 1.0 FE3 c:SF4102 2.7 38.9 1.0 FE4 c:SF4102 2.7 38.9 1.0 SG c:CYS17 3.0 30.5 1.0 CB c:CYS17 3.4 30.5 1.0 S2 c:SF4102 3.9 38.9 1.0 N c:CYS17 3.9 30.5 1.0 CB c:ALA40 4.1 28.1 1.0 CA c:CYS17 4.3 30.5 1.0 N c:GLN16 4.6 30.7 1.0 SG c:CYS11 4.8 28.6 1.0 N c:THR15 4.9 29.9 1.0

C.Xu, X.Pi, Y.Huang, G.Han, X.Chen, X.Qin, G.Huang, S.Zhao, Y.Yang, T.Kuang, W.Wang, S.F.Sui, J.R.Shen. Structural Basis For Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex. Nat Commun V. 11 5081 2020.
ISSN: ESSN 2041-1723
PubMed: 33033236
DOI: 10.1038/S41467-020-18867-X