Iron in PDB 6m0q: Hydroxylamine Oxidoreductase From Nitrosomonas Europaea

The structure of Hydroxylamine Oxidoreductase From Nitrosomonas Europaea, PDB code: 6m0q was solved by T.Fujiwara, Z.Fujimoto, Y.Nishigaya, T.Yamazaki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.18 / 1.99
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	141.23, 141.91, 213.11, 90, 90, 90
R / Rfree (%)	16.3 / 20

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 48;

Binding sites:

The binding sites of Iron atom in the Hydroxylamine Oxidoreductase From Nitrosomonas Europaea (pdb code 6m0q). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 48 binding sites of Iron where determined in the Hydroxylamine Oxidoreductase From Nitrosomonas Europaea, PDB code: 6m0q:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 48 in the Hydroxylamine Oxidoreductase From Nitrosomonas Europaea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Hydroxylamine Oxidoreductase From Nitrosomonas Europaea within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:21.7 occ:1.00 FE A:HEC601 0.0 21.7 1.0 NE2 A:HIS267 1.9 25.7 1.0 NE2 A:HIS347 2.0 21.6 1.0 NA A:HEC601 2.0 24.1 1.0 NC A:HEC601 2.0 21.1 1.0 NB A:HEC601 2.1 21.5 1.0 ND A:HEC601 2.1 23.2 1.0 CE1 A:HIS267 2.9 24.4 1.0 CD2 A:HIS347 3.0 18.0 1.0 C4A A:HEC601 3.0 24.4 1.0 CD2 A:HIS267 3.0 23.1 1.0 CE1 A:HIS347 3.0 18.3 1.0 C1B A:HEC601 3.0 22.1 1.0 C4C A:HEC601 3.0 22.3 1.0 C1A A:HEC601 3.0 24.5 1.0 C1C A:HEC601 3.1 20.5 1.0 C4D A:HEC601 3.1 22.1 1.0 C1D A:HEC601 3.1 21.4 1.0 C4B A:HEC601 3.1 22.2 1.0 CHB A:HEC601 3.3 24.1 1.0 CHD A:HEC601 3.4 22.4 1.0 CHA A:HEC601 3.4 21.3 1.0 CHC A:HEC601 3.5 20.4 1.0 ND1 A:HIS267 4.0 24.3 1.0 ND1 A:HIS347 4.1 19.8 1.0 CG A:HIS267 4.1 22.9 1.0 CG A:HIS347 4.1 19.9 1.0 C3A A:HEC601 4.2 23.4 1.0 C2B A:HEC601 4.2 21.2 1.0 C2A A:HEC601 4.3 25.1 1.0 C3C A:HEC601 4.3 21.2 1.0 C2C A:HEC601 4.3 22.5 1.0 C3B A:HEC601 4.3 20.0 1.0 C3D A:HEC601 4.3 20.8 1.0 C2D A:HEC601 4.3 19.3 1.0 O A:HOH763 4.7 22.9 1.0

Iron binding site 2 out of 48 in the Hydroxylamine Oxidoreductase From Nitrosomonas Europaea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Hydroxylamine Oxidoreductase From Nitrosomonas Europaea within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe602 b:22.2 occ:1.00 FE A:HEC602 0.0 22.2 1.0 NE2 A:HIS200 1.9 19.9 1.0 NB A:HEC602 1.9 18.1 1.0 NE2 A:HIS123 2.0 25.4 1.0 NA A:HEC602 2.0 19.8 1.0 ND A:HEC602 2.0 22.4 1.0 NC A:HEC602 2.0 22.8 1.0 CE1 A:HIS200 2.8 19.9 1.0 C1B A:HEC602 2.9 24.2 1.0 CE1 A:HIS123 2.9 25.7 1.0 CD2 A:HIS123 3.0 26.2 1.0 C1D A:HEC602 3.0 25.0 1.0 C4A A:HEC602 3.0 19.8 1.0 CD2 A:HIS200 3.0 19.0 1.0 C4C A:HEC602 3.0 23.7 1.0 C4B A:HEC602 3.0 21.0 1.0 C1A A:HEC602 3.1 22.5 1.0 C4D A:HEC602 3.1 24.4 1.0 C1C A:HEC602 3.1 21.6 1.0 CHB A:HEC602 3.3 21.9 1.0 CHD A:HEC602 3.4 23.9 1.0 CHA A:HEC602 3.5 23.1 1.0 CHC A:HEC602 3.5 20.7 1.0 ND1 A:HIS200 4.0 20.1 1.0 ND1 A:HIS123 4.1 25.9 1.0 CG A:HIS123 4.1 25.2 1.0 CG A:HIS200 4.1 21.2 1.0 C2B A:HEC602 4.2 22.8 1.0 C3B A:HEC602 4.2 19.1 1.0 C2D A:HEC602 4.2 23.2 1.0 C3A A:HEC602 4.3 23.9 1.0 C2A A:HEC602 4.3 24.8 1.0 C3C A:HEC602 4.3 21.4 1.0 C3D A:HEC602 4.3 20.5 1.0 C2C A:HEC602 4.3 20.3 1.0 CMA A:HEC601 4.9 19.0 1.0

Iron binding site 3 out of 48 in the Hydroxylamine Oxidoreductase From Nitrosomonas Europaea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Hydroxylamine Oxidoreductase From Nitrosomonas Europaea within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe603 b:26.4 occ:1.00 FE A:HEC603 0.0 26.4 1.0 NE2 A:HIS107 1.9 28.4 1.0 NE2 A:HIS184 2.0 31.0 1.0 NB A:HEC603 2.0 27.0 1.0 NA A:HEC603 2.0 26.4 1.0 ND A:HEC603 2.1 25.8 1.0 NC A:HEC603 2.1 30.8 1.0 CE1 A:HIS107 2.7 27.3 1.0 CE1 A:HIS184 2.9 28.5 1.0 C1B A:HEC603 3.0 28.9 1.0 CD2 A:HIS184 3.0 28.6 1.0 C4A A:HEC603 3.0 27.8 1.0 CD2 A:HIS107 3.0 26.3 1.0 C4B A:HEC603 3.0 30.7 1.0 C1D A:HEC603 3.0 30.4 1.0 C4C A:HEC603 3.0 30.9 1.0 C4D A:HEC603 3.1 28.6 1.0 C1A A:HEC603 3.1 26.3 1.0 C1C A:HEC603 3.1 30.7 1.0 CHB A:HEC603 3.4 27.4 1.0 CHD A:HEC603 3.4 28.8 1.0 CHC A:HEC603 3.5 30.7 1.0 CHA A:HEC603 3.5 27.2 1.0 ND1 A:HIS107 3.9 24.3 1.0 ND1 A:HIS184 4.1 27.2 1.0 CG A:HIS107 4.1 27.8 1.0 CG A:HIS184 4.1 27.4 1.0 C2B A:HEC603 4.2 27.4 1.0 C3B A:HEC603 4.2 25.9 1.0 C3A A:HEC603 4.3 27.9 1.0 C3C A:HEC603 4.3 29.9 1.0 C2D A:HEC603 4.3 30.4 1.0 C2A A:HEC603 4.3 26.7 1.0 C2C A:HEC603 4.3 32.8 1.0 C3D A:HEC603 4.3 28.7 1.0

Iron binding site 4 out of 48 in the Hydroxylamine Oxidoreductase From Nitrosomonas Europaea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Hydroxylamine Oxidoreductase From Nitrosomonas Europaea within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe604 b:22.7 occ:1.00 FE A:HEC604 0.0 22.7 1.0 NE2 A:HIS173 1.9 28.1 1.0 NE2 A:HIS270 1.9 23.4 1.0 NB A:HEC604 2.0 25.8 1.0 NA A:HEC604 2.0 21.0 1.0 NC A:HEC604 2.1 22.5 1.0 ND A:HEC604 2.1 22.8 1.0 CE1 A:HIS173 2.8 25.6 1.0 CD2 A:HIS270 2.9 21.9 1.0 CE1 A:HIS270 2.9 22.7 1.0 C1B A:HEC604 3.0 28.6 1.0 C4A A:HEC604 3.0 24.0 1.0 C4B A:HEC604 3.0 26.4 1.0 CD2 A:HIS173 3.0 26.4 1.0 C1A A:HEC604 3.1 24.7 1.0 C4C A:HEC604 3.1 22.0 1.0 C1C A:HEC604 3.1 23.6 1.0 C1D A:HEC604 3.1 20.4 1.0 C4D A:HEC604 3.1 20.8 1.0 CHB A:HEC604 3.3 26.7 1.0 CHC A:HEC604 3.4 25.7 1.0 CHD A:HEC604 3.4 21.0 1.0 CHA A:HEC604 3.5 22.0 1.0 ND1 A:HIS173 4.0 25.1 1.0 ND1 A:HIS270 4.0 22.9 1.0 CG A:HIS270 4.1 23.1 1.0 CG A:HIS173 4.1 22.0 1.0 C2B A:HEC604 4.2 29.2 1.0 C3B A:HEC604 4.2 25.8 1.0 C3A A:HEC604 4.2 22.9 1.0 C2A A:HEC604 4.3 22.4 1.0 C3C A:HEC604 4.3 19.8 1.0 C2C A:HEC604 4.3 22.9 1.0 C2D A:HEC604 4.3 19.0 1.0 C3D A:HEC604 4.3 19.4 1.0

Iron binding site 5 out of 48 in the Hydroxylamine Oxidoreductase From Nitrosomonas Europaea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Hydroxylamine Oxidoreductase From Nitrosomonas Europaea within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe605 b:20.5 occ:1.00 FE A:HEC605 0.0 20.5 1.0 NE2 A:HIS338 1.9 20.7 1.0 NA A:HEC605 2.0 17.1 1.0 NB A:HEC605 2.0 21.7 1.0 NC A:HEC605 2.0 18.0 1.0 ND A:HEC605 2.0 19.2 1.0 NE2 A:HIS483 2.0 20.7 1.0 CE1 A:HIS338 2.8 20.0 1.0 C4A A:HEC605 2.9 19.8 1.0 C1B A:HEC605 2.9 19.5 1.0 CD2 A:HIS483 3.0 17.7 1.0 C1A A:HEC605 3.0 19.1 1.0 C4B A:HEC605 3.0 20.1 1.0 C4D A:HEC605 3.0 18.6 1.0 CE1 A:HIS483 3.0 19.1 1.0 C1C A:HEC605 3.0 18.0 1.0 C1D A:HEC605 3.0 16.8 1.0 CD2 A:HIS338 3.0 16.7 1.0 C4C A:HEC605 3.0 20.7 1.0 CHB A:HEC605 3.3 17.9 1.0 CHA A:HEC605 3.4 17.7 1.0 CHC A:HEC605 3.4 20.7 1.0 CHD A:HEC605 3.4 16.2 1.0 ND1 A:HIS338 4.0 19.6 1.0 CG A:HIS338 4.1 18.4 1.0 ND1 A:HIS483 4.1 17.8 1.0 CG A:HIS483 4.1 19.0 1.0 C3A A:HEC605 4.1 21.0 1.0 C2B A:HEC605 4.1 22.8 1.0 C2A A:HEC605 4.2 19.3 1.0 C3B A:HEC605 4.2 22.0 1.0 C2C A:HEC605 4.2 15.6 1.0 C2D A:HEC605 4.3 17.9 1.0 C3D A:HEC605 4.3 18.0 1.0 C3C A:HEC605 4.3 20.6 1.0 ND2 A:ASN294 4.6 22.0 1.0

Iron binding site 6 out of 48 in the Hydroxylamine Oxidoreductase From Nitrosomonas Europaea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Hydroxylamine Oxidoreductase From Nitrosomonas Europaea within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe606 b:19.1 occ:1.00 FE A:HEC606 0.0 19.1 1.0 NE2 A:HIS287 1.8 22.8 1.0 NB A:HEC606 1.9 15.5 1.0 NE2 A:HIS228 1.9 23.0 1.0 ND A:HEC606 2.0 17.6 1.0 NA A:HEC606 2.0 20.6 1.0 NC A:HEC606 2.0 20.7 1.0 CE1 A:HIS287 2.8 19.7 1.0 CE1 A:HIS228 2.9 22.5 1.0 CD2 A:HIS287 2.9 19.7 1.0 C1B A:HEC606 2.9 20.5 1.0 C1D A:HEC606 3.0 17.4 1.0 C4C A:HEC606 3.0 18.6 1.0 CD2 A:HIS228 3.0 21.3 1.0 C4A A:HEC606 3.0 20.8 1.0 C4D A:HEC606 3.0 19.3 1.0 C4B A:HEC606 3.0 18.4 1.0 C1C A:HEC606 3.1 19.6 1.0 C1A A:HEC606 3.1 21.0 1.0 CHD A:HEC606 3.3 16.4 1.0 CHB A:HEC606 3.3 19.2 1.0 CHA A:HEC606 3.4 20.7 1.0 CHC A:HEC606 3.5 20.1 1.0 ND1 A:HIS287 3.9 19.4 1.0 CG A:HIS287 4.0 20.2 1.0 ND1 A:HIS228 4.0 21.4 1.0 CG A:HIS228 4.1 20.8 1.0 C2B A:HEC606 4.2 21.2 1.0 C3C A:HEC606 4.2 18.6 1.0 C3B A:HEC606 4.2 17.2 1.0 C2D A:HEC606 4.2 15.4 1.0 C3A A:HEC606 4.2 25.0 1.0 C2C A:HEC606 4.2 18.3 1.0 C3D A:HEC606 4.2 16.6 1.0 C2A A:HEC606 4.3 22.1 1.0 ND2 A:ASN259 4.6 27.9 1.0

Iron binding site 7 out of 48 in the Hydroxylamine Oxidoreductase From Nitrosomonas Europaea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Hydroxylamine Oxidoreductase From Nitrosomonas Europaea within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe607 b:20.4 occ:1.00 FE A:HEC607 0.0 20.4 1.0 NE2 A:HIS388 2.0 23.6 1.0 NB A:HEC607 2.0 21.4 1.0 NE2 A:HIS303 2.0 24.5 1.0 NC A:HEC607 2.0 21.3 1.0 NA A:HEC607 2.0 22.5 1.0 ND A:HEC607 2.0 18.3 1.0 CE1 A:HIS303 2.9 24.0 1.0 CD2 A:HIS388 2.9 20.8 1.0 CE1 A:HIS388 3.0 22.1 1.0 C1B A:HEC607 3.0 21.1 1.0 C4B A:HEC607 3.0 19.4 1.0 CD2 A:HIS303 3.0 22.2 1.0 C1C A:HEC607 3.0 19.1 1.0 C4D A:HEC607 3.0 19.0 1.0 C4C A:HEC607 3.0 20.6 1.0 C4A A:HEC607 3.0 21.1 1.0 C1A A:HEC607 3.0 21.9 1.0 C1D A:HEC607 3.1 19.6 1.0 CHC A:HEC607 3.4 17.7 1.0 CHB A:HEC607 3.4 20.2 1.0 CHA A:HEC607 3.4 20.3 1.0 CHD A:HEC607 3.4 18.1 1.0 ND1 A:HIS303 4.0 23.2 1.0 ND1 A:HIS388 4.1 21.1 1.0 CG A:HIS388 4.1 23.4 1.0 CG A:HIS303 4.1 22.6 1.0 C2B A:HEC607 4.2 20.6 1.0 C3B A:HEC607 4.2 18.1 1.0 C3C A:HEC607 4.2 19.1 1.0 C2C A:HEC607 4.2 18.5 1.0 C3D A:HEC607 4.2 20.0 1.0 C3A A:HEC607 4.3 19.5 1.0 C2A A:HEC607 4.3 21.3 1.0 C2D A:HEC607 4.3 17.9 1.0 CG A:PRO332 4.8 23.4 1.0 O A:HOH1020 4.9 18.6 1.0

Iron binding site 8 out of 48 in the Hydroxylamine Oxidoreductase From Nitrosomonas Europaea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Hydroxylamine Oxidoreductase From Nitrosomonas Europaea within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe608 b:30.2 occ:1.00 FE A:ISW608 0.0 30.2 1.0 ND A:ISW608 1.9 26.8 1.0 NA A:ISW608 1.9 34.6 1.0 NB A:ISW608 1.9 27.9 1.0 NC A:ISW608 1.9 26.2 1.0 NE2 A:HIS257 2.2 25.8 1.0 O A:HOH962 2.6 38.2 1.0 C1B A:ISW608 2.8 27.1 1.0 C4C A:ISW608 3.0 22.1 1.0 C1A A:ISW608 3.0 32.8 1.0 C4D A:ISW608 3.0 24.8 1.0 C4A A:ISW608 3.0 32.6 1.0 CE1 A:HIS257 3.0 24.1 1.0 C4B A:ISW608 3.1 26.2 1.0 C1D A:ISW608 3.1 23.3 1.0 C1C A:ISW608 3.2 23.9 1.0 CD2 A:HIS257 3.4 23.5 1.0 CHB A:ISW608 3.5 27.5 1.0 CHC A:ISW608 3.6 26.1 1.0 OH C:TYR491 3.6 38.8 1.0 CHD A:ISW608 3.7 25.0 1.0 CHA A:ISW608 3.8 30.6 1.0 C2B A:ISW608 4.2 25.8 1.0 CZ C:TYR491 4.2 33.6 1.0 CE2 C:TYR491 4.2 34.8 1.0 ND1 A:HIS257 4.2 25.5 1.0 C3A A:ISW608 4.2 36.5 1.0 C2A A:ISW608 4.2 36.3 1.0 C3B A:ISW608 4.3 23.2 1.0 C3C A:ISW608 4.3 16.6 1.0 C2C A:ISW608 4.3 21.7 1.0 C3D A:ISW608 4.3 22.5 1.0 C2D A:ISW608 4.4 22.4 1.0 CG A:HIS257 4.4 24.1 1.0 NE2 A:HIS292 4.6 23.9 1.0 CMD A:HEC606 4.7 17.3 1.0

Iron binding site 9 out of 48 in the Hydroxylamine Oxidoreductase From Nitrosomonas Europaea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Hydroxylamine Oxidoreductase From Nitrosomonas Europaea within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe609 b:28.3 occ:1.00 FE A:ISW609 0.0 28.3 1.0 ND A:ISW609 1.9 23.6 1.0 NB A:ISW609 1.9 28.7 1.0 NA A:ISW609 1.9 32.6 1.0 NC A:ISW609 1.9 25.9 1.0 NE2 E:HIS257 2.2 24.6 1.0 O A:HOH894 2.5 35.7 1.0 C1B A:ISW609 2.8 32.4 1.0 C4C A:ISW609 2.9 17.9 1.0 C1A A:ISW609 3.0 32.6 1.0 CE1 E:HIS257 3.0 25.2 1.0 C4D A:ISW609 3.0 23.3 1.0 C4A A:ISW609 3.0 32.7 1.0 C4B A:ISW609 3.1 26.7 1.0 C1D A:ISW609 3.1 22.9 1.0 C1C A:ISW609 3.2 20.5 1.0 CD2 E:HIS257 3.4 21.5 1.0 CHB A:ISW609 3.5 33.1 1.0 OH A:TYR491 3.5 37.2 1.0 CHC A:ISW609 3.6 25.2 1.0 CHD A:ISW609 3.7 20.8 1.0 CHA A:ISW609 3.8 30.3 1.0 C2B A:ISW609 4.2 30.3 1.0 CZ A:TYR491 4.2 36.1 1.0 ND1 E:HIS257 4.2 22.9 1.0 CE2 A:TYR491 4.2 32.2 1.0 C3B A:ISW609 4.2 25.9 1.0 C2A A:ISW609 4.2 35.8 1.0 C3C A:ISW609 4.3 19.5 1.0 C3A A:ISW609 4.3 34.1 1.0 C2C A:ISW609 4.3 24.5 1.0 C3D A:ISW609 4.3 24.4 1.0 C2D A:ISW609 4.3 21.7 1.0 CG E:HIS257 4.4 19.8 1.0 NE2 E:HIS292 4.6 26.5 1.0 CMD E:HEC606 4.7 22.2 1.0

Iron binding site 10 out of 48 in the Hydroxylamine Oxidoreductase From Nitrosomonas Europaea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Hydroxylamine Oxidoreductase From Nitrosomonas Europaea within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe601 b:22.6 occ:1.00 FE C:HEC601 0.0 22.6 1.0 NA C:HEC601 2.0 24.9 1.0 NE2 C:HIS347 2.0 28.1 1.0 NE2 C:HIS267 2.0 25.4 1.0 NB C:HEC601 2.0 22.7 1.0 NC C:HEC601 2.0 24.5 1.0 ND C:HEC601 2.1 21.7 1.0 CE1 C:HIS347 2.9 25.5 1.0 CD2 C:HIS347 3.0 25.1 1.0 C4A C:HEC601 3.0 25.3 1.0 CE1 C:HIS267 3.0 23.1 1.0 C1A C:HEC601 3.0 26.3 1.0 CD2 C:HIS267 3.0 23.7 1.0 C1B C:HEC601 3.0 22.2 1.0 C4C C:HEC601 3.0 25.6 1.0 C4B C:HEC601 3.1 23.4 1.0 C4D C:HEC601 3.1 21.4 1.0 C1D C:HEC601 3.1 22.9 1.0 C1C C:HEC601 3.1 24.0 1.0 CHB C:HEC601 3.4 22.1 1.0 CHA C:HEC601 3.4 24.3 1.0 CHD C:HEC601 3.4 21.2 1.0 CHC C:HEC601 3.5 20.3 1.0 ND1 C:HIS347 4.1 26.1 1.0 CG C:HIS347 4.1 26.8 1.0 ND1 C:HIS267 4.1 22.9 1.0 CG C:HIS267 4.1 23.5 1.0 C3A C:HEC601 4.2 25.3 1.0 C2A C:HEC601 4.2 25.6 1.0 C2B C:HEC601 4.2 22.1 1.0 C3B C:HEC601 4.3 21.2 1.0 C3C C:HEC601 4.3 23.5 1.0 C2C C:HEC601 4.3 22.3 1.0 C3D C:HEC601 4.3 21.1 1.0 C2D C:HEC601 4.3 22.5 1.0 O C:HOH774 4.8 20.6 1.0

T.Fujiwara, Z.Fujimoto, Y.Nishigaya, T.Yamazaki. Enhancement of the Activity of Hydroxylamine Oxidoreductase By Juglone, Plant Secondary Metabolite. To Be Published.