Iron in PDB 6m3x: Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii

All present enzymatic activity of Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii:
1.13.11.55;

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii (pdb code 6m3x). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 24 binding sites of Iron where determined in the Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii, PDB code: 6m3x:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 24 in the Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe401 b:28.8 occ:1.00 NE2 A:HIS86 2.2 18.9 1.0 NE2 A:HIS90 2.4 21.0 1.0 O A:HOH579 2.4 18.5 1.0 OE2 A:GLU114 2.4 15.5 1.0 OE1 A:GLU114 2.4 15.5 1.0 CD A:GLU114 2.7 15.5 1.0 CD2 A:HIS86 3.2 18.9 1.0 CE1 A:HIS86 3.2 18.9 1.0 CD2 A:HIS90 3.2 21.0 1.0 CE1 A:HIS90 3.4 21.0 1.0 O A:HOH503 3.9 13.0 1.0 CG A:GLU114 4.2 15.5 1.0 ND1 A:HIS86 4.3 18.9 1.0 CG A:HIS86 4.3 18.9 1.0 CG A:HIS90 4.4 21.0 1.0 ND1 A:HIS90 4.5 21.0 1.0 OG1 A:THR78 4.5 12.4 1.0 CB A:ALA7 4.6 13.2 1.0 CE A:MET89 4.7 21.6 1.0 CA A:GLY208 4.8 16.9 1.0

Iron binding site 2 out of 24 in the Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe401 b:28.9 occ:1.00 NE2 B:HIS86 2.2 18.9 1.0 NE2 B:HIS90 2.4 21.0 1.0 O B:HOH579 2.4 18.4 1.0 OE2 B:GLU114 2.4 15.6 1.0 OE1 B:GLU114 2.4 15.6 1.0 CD B:GLU114 2.8 15.6 1.0 CD2 B:HIS86 3.2 18.9 1.0 CE1 B:HIS86 3.2 18.9 1.0 CD2 B:HIS90 3.2 21.0 1.0 CE1 B:HIS90 3.4 21.0 1.0 O B:HOH503 3.9 13.0 1.0 CG B:GLU114 4.2 15.6 1.0 ND1 B:HIS86 4.3 18.9 1.0 CG B:HIS86 4.3 18.9 1.0 CG B:HIS90 4.4 21.0 1.0 ND1 B:HIS90 4.5 21.0 1.0 OG1 B:THR78 4.5 12.4 1.0 CB B:ALA7 4.6 13.3 1.0 CE B:MET89 4.7 21.6 1.0 CA B:GLY208 4.8 17.0 1.0

Iron binding site 3 out of 24 in the Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe401 b:28.9 occ:1.00 NE2 C:HIS86 2.2 18.9 1.0 NE2 C:HIS90 2.4 21.1 1.0 O C:HOH579 2.4 18.4 1.0 OE2 C:GLU114 2.4 15.6 1.0 OE1 C:GLU114 2.4 15.6 1.0 CD C:GLU114 2.8 15.6 1.0 CD2 C:HIS86 3.2 18.9 1.0 CE1 C:HIS86 3.2 18.9 1.0 CD2 C:HIS90 3.2 21.1 1.0 CE1 C:HIS90 3.4 21.1 1.0 O C:HOH503 3.9 13.0 1.0 CG C:GLU114 4.2 15.6 1.0 ND1 C:HIS86 4.3 18.9 1.0 CG C:HIS86 4.3 18.9 1.0 CG C:HIS90 4.4 21.1 1.0 ND1 C:HIS90 4.5 21.1 1.0 OG1 C:THR78 4.5 12.5 1.0 CB C:ALA7 4.6 13.3 1.0 CE C:MET89 4.7 21.7 1.0 CA C:GLY208 4.8 17.0 1.0

Iron binding site 4 out of 24 in the Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe401 b:28.8 occ:1.00 NE2 D:HIS86 2.2 18.9 1.0 NE2 D:HIS90 2.4 21.1 1.0 O D:HOH579 2.4 18.4 1.0 OE2 D:GLU114 2.4 15.6 1.0 OE1 D:GLU114 2.4 15.6 1.0 CD D:GLU114 2.8 15.6 1.0 CD2 D:HIS86 3.2 18.9 1.0 CE1 D:HIS86 3.2 18.9 1.0 CD2 D:HIS90 3.2 21.1 1.0 CE1 D:HIS90 3.4 21.1 1.0 O D:HOH503 3.9 13.0 1.0 CG D:GLU114 4.2 15.6 1.0 ND1 D:HIS86 4.3 18.9 1.0 CG D:HIS86 4.3 18.9 1.0 CG D:HIS90 4.4 21.1 1.0 ND1 D:HIS90 4.5 21.1 1.0 OG1 D:THR78 4.5 12.4 1.0 CB D:ALA7 4.6 13.2 1.0 CE D:MET89 4.7 21.7 1.0 CA D:GLY208 4.8 17.0 1.0

Iron binding site 5 out of 24 in the Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe401 b:28.9 occ:1.00 NE2 E:HIS86 2.2 18.9 1.0 NE2 E:HIS90 2.4 21.1 1.0 O E:HOH579 2.4 18.6 1.0 OE2 E:GLU114 2.4 15.6 1.0 OE1 E:GLU114 2.4 15.6 1.0 CD E:GLU114 2.8 15.6 1.0 CD2 E:HIS86 3.2 18.9 1.0 CE1 E:HIS86 3.2 18.9 1.0 CD2 E:HIS90 3.2 21.1 1.0 CE1 E:HIS90 3.4 21.1 1.0 O E:HOH503 3.9 13.0 1.0 CG E:GLU114 4.2 15.6 1.0 ND1 E:HIS86 4.3 18.9 1.0 CG E:HIS86 4.3 18.9 1.0 CG E:HIS90 4.4 21.1 1.0 ND1 E:HIS90 4.5 21.1 1.0 OG1 E:THR78 4.5 12.4 1.0 CB E:ALA7 4.6 13.2 1.0 CE E:MET89 4.7 21.7 1.0 CA E:GLY208 4.8 17.0 1.0

Iron binding site 6 out of 24 in the Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe401 b:28.9 occ:1.00 NE2 F:HIS86 2.2 18.9 1.0 NE2 F:HIS90 2.4 21.1 1.0 O F:HOH579 2.4 18.5 1.0 OE2 F:GLU114 2.4 15.6 1.0 OE1 F:GLU114 2.4 15.6 1.0 CD F:GLU114 2.8 15.6 1.0 CD2 F:HIS86 3.2 18.9 1.0 CE1 F:HIS86 3.2 18.9 1.0 CD2 F:HIS90 3.2 21.1 1.0 CE1 F:HIS90 3.4 21.1 1.0 O F:HOH503 3.9 13.0 1.0 CG F:GLU114 4.2 15.6 1.0 ND1 F:HIS86 4.3 18.9 1.0 CG F:HIS86 4.3 18.9 1.0 CG F:HIS90 4.4 21.1 1.0 ND1 F:HIS90 4.5 21.1 1.0 OG1 F:THR78 4.5 12.4 1.0 CB F:ALA7 4.6 13.3 1.0 CE F:MET89 4.7 21.7 1.0 CA F:GLY208 4.8 17.0 1.0

Iron binding site 7 out of 24 in the Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii within 5.0Å range: probe atom residue distance (Å) B Occ G:Fe401 b:29.0 occ:1.00 NE2 G:HIS86 2.2 18.9 1.0 NE2 G:HIS90 2.4 21.0 1.0 O G:HOH579 2.4 18.5 1.0 OE2 G:GLU114 2.4 15.6 1.0 OE1 G:GLU114 2.4 15.6 1.0 CD G:GLU114 2.8 15.6 1.0 CD2 G:HIS86 3.2 18.9 1.0 CE1 G:HIS86 3.2 18.9 1.0 CD2 G:HIS90 3.2 21.0 1.0 CE1 G:HIS90 3.4 21.0 1.0 O G:HOH503 3.9 13.0 1.0 CG G:GLU114 4.2 15.6 1.0 ND1 G:HIS86 4.3 18.9 1.0 CG G:HIS86 4.3 18.9 1.0 CG G:HIS90 4.4 21.0 1.0 ND1 G:HIS90 4.5 21.0 1.0 OG1 G:THR78 4.5 12.4 1.0 CB G:ALA7 4.6 13.2 1.0 CE G:MET89 4.7 21.7 1.0 CA G:GLY208 4.8 16.9 1.0

Iron binding site 8 out of 24 in the Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii within 5.0Å range: probe atom residue distance (Å) B Occ H:Fe401 b:28.7 occ:1.00 NE2 H:HIS86 2.2 18.9 1.0 NE2 H:HIS90 2.4 21.1 1.0 O H:HOH579 2.4 18.5 1.0 OE2 H:GLU114 2.4 15.5 1.0 OE1 H:GLU114 2.4 15.5 1.0 CD H:GLU114 2.8 15.5 1.0 CD2 H:HIS86 3.2 18.9 1.0 CE1 H:HIS86 3.2 18.9 1.0 CD2 H:HIS90 3.2 21.1 1.0 CE1 H:HIS90 3.4 21.1 1.0 O H:HOH503 3.9 13.0 1.0 CG H:GLU114 4.2 15.5 1.0 ND1 H:HIS86 4.3 18.9 1.0 CG H:HIS86 4.3 18.9 1.0 CG H:HIS90 4.4 21.1 1.0 ND1 H:HIS90 4.5 21.1 1.0 OG1 H:THR78 4.5 12.4 1.0 CB H:ALA7 4.6 13.2 1.0 CE H:MET89 4.7 21.6 1.0 CA H:GLY208 4.8 17.0 1.0

Iron binding site 9 out of 24 in the Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii within 5.0Å range: probe atom residue distance (Å) B Occ I:Fe401 b:28.8 occ:1.00 NE2 I:HIS86 2.2 18.9 1.0 NE2 I:HIS90 2.4 21.1 1.0 O I:HOH579 2.4 18.4 1.0 OE2 I:GLU114 2.4 15.6 1.0 OE1 I:GLU114 2.4 15.6 1.0 CD I:GLU114 2.8 15.6 1.0 CD2 I:HIS86 3.2 18.9 1.0 CE1 I:HIS86 3.2 18.9 1.0 CD2 I:HIS90 3.2 21.1 1.0 CE1 I:HIS90 3.4 21.1 1.0 O I:HOH503 3.9 13.0 1.0 CG I:GLU114 4.2 15.6 1.0 ND1 I:HIS86 4.3 18.9 1.0 CG I:HIS86 4.3 18.9 1.0 CG I:HIS90 4.4 21.1 1.0 ND1 I:HIS90 4.5 21.1 1.0 OG1 I:THR78 4.5 12.4 1.0 CB I:ALA7 4.6 13.2 1.0 CE I:MET89 4.7 21.7 1.0 CA I:GLY208 4.8 16.9 1.0

Iron binding site 10 out of 24 in the Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of Sulfur Oxygenase Reductase From Sulfurisphaera Tokodaii within 5.0Å range: probe atom residue distance (Å) B Occ J:Fe401 b:28.7 occ:1.00 NE2 J:HIS86 2.2 18.9 1.0 NE2 J:HIS90 2.4 21.1 1.0 O J:HOH579 2.4 18.4 1.0 OE2 J:GLU114 2.4 15.6 1.0 OE1 J:GLU114 2.4 15.6 1.0 CD J:GLU114 2.8 15.6 1.0 CD2 J:HIS86 3.2 18.9 1.0 CE1 J:HIS86 3.2 18.9 1.0 CD2 J:HIS90 3.2 21.1 1.0 CE1 J:HIS90 3.4 21.1 1.0 O J:HOH503 3.9 13.0 1.0 CG J:GLU114 4.2 15.6 1.0 ND1 J:HIS86 4.3 18.9 1.0 CG J:HIS86 4.3 18.9 1.0 CG J:HIS90 4.4 21.1 1.0 ND1 J:HIS90 4.5 21.1 1.0 OG1 J:THR78 4.5 12.4 1.0 CB J:ALA7 4.6 13.2 1.0 CE J:MET89 4.7 21.7 1.0 CA J:GLY208 4.8 17.0 1.0

Y.Sato, T.Yabuki, N.Adachi, T.Moriya, T.Arakawa, M.Kawasaki, C.Yamada, T.Senda, S.Fushinobu, T.Wakagi. Crystallographic and Cryogenic Electron Microscopic Structures and Enzymatic Characterization of Sulfur Oxygenase Reductase Fromsulfurisphaera Tokodaii. J Struct Biol X V. 4 00030 2020.
ISSN: ESSN 2590-1524
PubMed: 32775998
DOI: 10.1016/J.YJSBX.2020.100030