Atomistry » Iron » PDB 6m54-6n1o » 6mfl
Atomistry »
  Iron »
    PDB 6m54-6n1o »
      6mfl »

Iron in PDB 6mfl: Structure of Siderophore Binding Protein Baub Bound to A Complex Between Two Molecules of Acinetobactin and Ferric Iron.

Protein crystallography data

The structure of Structure of Siderophore Binding Protein Baub Bound to A Complex Between Two Molecules of Acinetobactin and Ferric Iron., PDB code: 6mfl was solved by A.M.Gulick, D.C.Bailey, T.A.Wencewicz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.21 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 37.762, 137.055, 56.208, 90.00, 90.02, 90.00
R / Rfree (%) 16.9 / 21.4

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Siderophore Binding Protein Baub Bound to A Complex Between Two Molecules of Acinetobactin and Ferric Iron. (pdb code 6mfl). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of Siderophore Binding Protein Baub Bound to A Complex Between Two Molecules of Acinetobactin and Ferric Iron., PDB code: 6mfl:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 6mfl

Go back to Iron Binding Sites List in 6mfl
Iron binding site 1 out of 2 in the Structure of Siderophore Binding Protein Baub Bound to A Complex Between Two Molecules of Acinetobactin and Ferric Iron.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Siderophore Binding Protein Baub Bound to A Complex Between Two Molecules of Acinetobactin and Ferric Iron. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:14.5
occ:1.00
OAE A:OPV402 2.0 10.9 1.0
NAM A:OPV403 2.1 12.6 1.0
OAE A:OPV403 2.1 24.1 1.0
NAM A:OPV402 2.1 13.9 1.0
OAD A:OPV403 2.3 15.2 1.0
OAD A:OPV402 2.3 12.8 1.0
CAU A:OPV402 2.8 13.1 1.0
CAU A:OPV403 2.8 17.5 1.0
CAS A:OPV403 2.9 17.0 1.0
CAS A:OPV402 2.9 13.3 1.0
CAI A:OPV403 3.0 14.4 1.0
CAI A:OPV402 3.1 16.7 1.0
CAJ A:OPV403 3.1 14.4 1.0
CAJ A:OPV402 3.2 17.8 1.0
HH A:TYR301 3.3 24.5 1.0
OH A:TYR301 3.7 20.4 1.0
CAV A:OPV402 4.2 15.1 1.0
CAV A:OPV403 4.2 27.5 1.0
NAO A:OPV403 4.2 11.6 1.0
NAO A:OPV402 4.3 11.3 1.0
CAG A:OPV403 4.3 21.2 1.0
CAG A:OPV402 4.3 14.0 1.0
CAT A:OPV403 4.3 15.7 1.0
CAT A:OPV402 4.4 17.7 1.0
HH21 A:ARG261 4.4 20.7 1.0
N A:OPV403 4.4 25.1 1.0
N A:OPV402 4.4 15.8 1.0
HE A:ARG261 4.7 27.1 1.0
CAQ A:OPV402 4.8 14.7 1.0
HE1 A:TYR301 4.8 18.6 1.0
CZ A:TYR301 4.8 19.8 1.0
CAQ A:OPV403 4.8 22.0 1.0
O A:OPV402 4.9 15.8 1.0

Iron binding site 2 out of 2 in 6mfl

Go back to Iron Binding Sites List in 6mfl
Iron binding site 2 out of 2 in the Structure of Siderophore Binding Protein Baub Bound to A Complex Between Two Molecules of Acinetobactin and Ferric Iron.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Siderophore Binding Protein Baub Bound to A Complex Between Two Molecules of Acinetobactin and Ferric Iron. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:13.2
occ:1.00
OAE B:OPV403 2.0 14.5 1.0
OAE B:OPV402 2.1 12.8 1.0
NAM B:OPV403 2.1 10.9 1.0
OAD B:OPV403 2.1 14.5 1.0
NAM B:OPV402 2.2 12.8 1.0
OAD B:OPV402 2.2 13.1 1.0
CAU B:OPV403 2.8 20.7 1.0
CAS B:OPV403 2.9 16.2 1.0
CAU B:OPV402 2.9 12.8 1.0
CAS B:OPV402 3.0 11.4 1.0
CAI B:OPV402 3.0 15.2 1.0
CAI B:OPV403 3.1 12.3 1.0
CAJ B:OPV403 3.2 15.6 1.0
HH B:TYR301 3.2 21.6 1.0
CAJ B:OPV402 3.3 12.7 1.0
OH B:TYR301 3.6 18.0 1.0
HH21 B:ARG261 4.2 26.9 1.0
CAV B:OPV403 4.2 24.2 1.0
NAO B:OPV402 4.3 10.9 1.0
CAV B:OPV402 4.3 15.3 1.0
CAG B:OPV403 4.3 20.1 1.0
NAO B:OPV403 4.3 13.9 1.0
CAG B:OPV402 4.3 13.5 1.0
CAT B:OPV403 4.4 9.7 1.0
CAT B:OPV402 4.5 17.5 1.0
N B:OPV403 4.5 28.1 1.0
N B:OPV402 4.6 11.3 1.0
HE B:ARG261 4.6 19.7 1.0
CZ B:TYR301 4.7 11.8 1.0
CAQ B:OPV403 4.9 17.8 1.0
HE1 B:TYR301 4.9 15.6 1.0
CAQ B:OPV402 4.9 17.8 1.0
NH2 B:ARG261 5.0 22.4 1.0

Reference:

D.C.Bailey, T.J.Bohac, J.A.Shapiro, D.E.Giblin, T.A.Wencewicz, A.M.Gulick. Crystal Structure of the Siderophore Binding Protein Baub Bound to An Unusual 2:1 Complex Between Acinetobactin and Ferric Iron. Biochemistry V. 57 6653 2018.
ISSN: ISSN 1520-4995
PubMed: 30406986
DOI: 10.1021/ACS.BIOCHEM.8B00986
Page generated: Sun Dec 13 16:44:10 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy