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Iron in PDB 6n03: Co-Bound Sperm Whale Myoglobin, Room Temperature Structure, Last 2 Degrees of 5 Degree Total Oscillation and 160 Kgy Dose

Protein crystallography data

The structure of Co-Bound Sperm Whale Myoglobin, Room Temperature Structure, Last 2 Degrees of 5 Degree Total Oscillation and 160 Kgy Dose, PDB code: 6n03 was solved by A.D.Finke, J.L.Wierman, O.Pare-Labrosse, A.Sarrachini, J.Besaw, P.Mehrabi, S.M.Gruner, R.J.D.Miller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.16 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 37.030, 45.900, 82.910, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 28.5

Iron Binding Sites:

The binding sites of Iron atom in the Co-Bound Sperm Whale Myoglobin, Room Temperature Structure, Last 2 Degrees of 5 Degree Total Oscillation and 160 Kgy Dose (pdb code 6n03). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Co-Bound Sperm Whale Myoglobin, Room Temperature Structure, Last 2 Degrees of 5 Degree Total Oscillation and 160 Kgy Dose, PDB code: 6n03:

Iron binding site 1 out of 1 in 6n03

Go back to Iron Binding Sites List in 6n03
Iron binding site 1 out of 1 in the Co-Bound Sperm Whale Myoglobin, Room Temperature Structure, Last 2 Degrees of 5 Degree Total Oscillation and 160 Kgy Dose


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Co-Bound Sperm Whale Myoglobin, Room Temperature Structure, Last 2 Degrees of 5 Degree Total Oscillation and 160 Kgy Dose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:41.5
occ:1.00
FE A:HEM201 0.0 41.5 1.0
NE2 A:HIS93 2.0 43.5 1.0
NA A:HEM201 2.0 43.7 1.0
NB A:HEM201 2.1 44.2 1.0
ND A:HEM201 2.1 44.2 1.0
C A:CMO202 2.1 45.6 1.0
NC A:HEM201 2.1 41.6 1.0
CE1 A:HIS93 2.9 39.9 1.0
C1B A:HEM201 3.0 39.1 1.0
C4A A:HEM201 3.0 45.1 1.0
C1A A:HEM201 3.1 44.2 1.0
CD2 A:HIS93 3.1 40.8 1.0
C1D A:HEM201 3.1 49.9 1.0
C4C A:HEM201 3.1 47.1 1.0
C4D A:HEM201 3.1 50.9 1.0
O A:CMO202 3.1 54.5 1.0
C4B A:HEM201 3.2 42.5 1.0
C1C A:HEM201 3.2 43.3 1.0
CHB A:HEM201 3.4 40.4 1.0
CHD A:HEM201 3.4 49.2 1.0
CHA A:HEM201 3.5 46.0 1.0
CHC A:HEM201 3.6 41.4 1.0
ND1 A:HIS93 4.0 41.0 1.0
CG A:HIS93 4.2 41.1 1.0
C3A A:HEM201 4.2 46.3 1.0
C2B A:HEM201 4.3 43.6 1.0
C2A A:HEM201 4.3 47.3 1.0
C3D A:HEM201 4.3 50.7 1.0
C2D A:HEM201 4.3 47.8 1.0
C3C A:HEM201 4.3 48.4 1.0
C3B A:HEM201 4.3 43.3 1.0
C2C A:HEM201 4.4 43.3 1.0
NE2 A:HIS64 4.8 48.0 1.0
CD2 A:HIS97 4.8 49.1 1.0

Reference:

J.L.Wierman, O.Pare-Labrosse, A.Sarracini, J.E.Besaw, M.J.Cook, S.Oghbaey, H.Daoud, P.Mehrabi, I.Kriksunov, A.Kuo, D.J.Schuller, S.Smith, O.P.Ernst, D.M.E.Szebenyi, S.M.Gruner, R.J.D.Miller, A.D.Finke. Fixed-Target Serial Oscillation Crystallography at Room Temperature. Iucrj V. 6 305 2019.
ISSN: ESSN 2052-2525
PubMed: 30867928
DOI: 10.1107/S2052252519001453
Page generated: Wed Aug 7 02:35:39 2024

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