Iron in PDB 6n1f: Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei

The structure of Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei, PDB code: 6n1f was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.35 / 2.05
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	47.030, 54.990, 112.100, 77.66, 87.03, 64.73
R / Rfree (%)	20.8 / 24.2

The structure of Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Iron atom in the Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei (pdb code 6n1f). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei, PDB code: 6n1f:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe300 b:52.1 occ:0.90 NE2 A:HIS188 2.2 60.9 1.0 OD1 A:ASP136 2.2 66.0 1.0 NE2 A:HIS134 2.5 45.2 1.0 O A:HOH500 2.5 44.4 1.0 CG A:ASP136 2.9 60.8 1.0 OD2 A:ASP136 2.9 58.5 1.0 O A:HOH496 3.0 44.6 1.0 CE1 A:HIS188 3.1 57.1 1.0 CD2 A:HIS188 3.2 51.8 1.0 CE1 A:HIS134 3.3 43.9 1.0 CD2 A:HIS134 3.6 43.2 1.0 ND1 A:HIS188 4.2 54.9 1.0 CB A:ASP136 4.3 52.5 1.0 CG A:HIS188 4.3 48.7 1.0 ND1 A:HIS134 4.5 44.4 1.0 CG A:HIS134 4.6 45.8 1.0 CE1 A:PHE204 4.7 33.8 1.0 CZ A:PHE204 4.7 38.2 1.0 CA A:ASP136 4.8 50.9 1.0 N A:ASP136 4.9 49.6 1.0

Iron binding site 2 out of 4 in the Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe300 b:44.3 occ:0.83 NE2 B:HIS188 1.9 54.0 1.0 OD1 B:ASP136 2.0 61.6 1.0 NE2 B:HIS134 2.1 48.0 1.0 O B:HOH491 2.4 45.8 1.0 CE1 B:HIS188 2.8 52.8 1.0 CG B:ASP136 2.8 53.5 1.0 CD2 B:HIS188 3.0 51.0 1.0 OD2 B:ASP136 3.0 55.8 1.0 CE1 B:HIS134 3.0 43.1 1.0 CD2 B:HIS134 3.1 45.9 1.0 O B:HOH499 3.2 30.1 1.0 ND1 B:HIS188 3.9 53.8 1.0 CG B:HIS188 4.1 48.1 1.0 ND1 B:HIS134 4.1 43.4 1.0 CB B:ASP136 4.2 46.8 1.0 CG B:HIS134 4.2 46.7 1.0 N B:ASP136 4.5 37.7 1.0 CA B:ASP136 4.6 43.6 1.0 O B:HOH509 4.6 48.2 1.0 O B:HOH401 4.6 37.2 1.0 CE1 B:PHE204 4.9 30.1 1.0 CZ B:PHE204 5.0 30.9 1.0

Iron binding site 3 out of 4 in the Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe300 b:52.9 occ:0.89 OD1 C:ASP136 2.1 70.4 1.0 NE2 C:HIS188 2.2 54.1 1.0 O C:HOH463 2.4 46.3 1.0 NE2 C:HIS134 2.5 39.8 1.0 CG C:ASP136 2.8 66.8 1.0 OD2 C:ASP136 2.9 66.5 1.0 O C:HOH499 3.0 50.3 1.0 CE1 C:HIS188 3.1 47.5 1.0 O C:HOH505 3.1 54.7 1.0 CD2 C:HIS188 3.2 44.0 1.0 CE1 C:HIS134 3.4 38.4 1.0 O C:HOH405 3.4 46.3 1.0 CD2 C:HIS134 3.6 41.2 1.0 ND1 C:HIS188 4.3 46.3 1.0 CB C:ASP136 4.3 59.9 1.0 CG C:HIS188 4.3 41.5 1.0 ND1 C:HIS134 4.5 40.8 1.0 CE1 C:PHE204 4.5 35.1 1.0 CG C:HIS134 4.6 43.1 1.0 CZ C:PHE204 4.7 34.2 1.0 CA C:ASP136 4.7 52.7 1.0 N C:ASP136 4.9 49.5 1.0

Iron binding site 4 out of 4 in the Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe300 b:50.9 occ:0.90 OD1 D:ASP136 2.0 77.4 1.0 NE2 D:HIS188 2.1 53.0 1.0 NE2 D:HIS134 2.3 37.1 1.0 CG D:ASP136 2.6 68.0 1.0 OD2 D:ASP136 2.7 64.2 1.0 O D:HOH496 2.8 49.9 1.0 O D:HOH456 2.9 31.9 1.0 CD2 D:HIS188 3.0 51.2 1.0 CE1 D:HIS188 3.1 52.0 1.0 CD2 D:HIS134 3.1 39.6 1.0 CE1 D:HIS134 3.4 34.8 1.0 CB D:ASP136 4.0 61.6 1.0 CG D:HIS188 4.2 44.0 1.0 ND1 D:HIS188 4.2 50.2 1.0 CG D:HIS134 4.3 39.7 1.0 ND1 D:HIS134 4.4 33.5 1.0 N D:ASP136 4.4 53.5 1.0 CA D:ASP136 4.4 55.8 1.0 CE1 D:PHE204 4.8 38.0 1.0 CZ D:PHE204 4.9 40.6 1.0

J.Abendroth, P.S.Horanyi, D.Lorimer, T.E.Edwards. Crystal Structure of Oxidoreductase, 2OG-Fe(II) Oxygenase Family, From Burkholderia Pseudomallei To Be Published.