Atomistry » Iron » PDB 6n20-6ngf » 6nbq
Atomistry »
  Iron »
    PDB 6n20-6ngf »
      6nbq »

Iron in PDB 6nbq: T.Elongatus Ndh (Data-Set 1)

Enzymatic activity of T.Elongatus Ndh (Data-Set 1)

All present enzymatic activity of T.Elongatus Ndh (Data-Set 1):
1.6.5.11;

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the T.Elongatus Ndh (Data-Set 1) (pdb code 6nbq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the T.Elongatus Ndh (Data-Set 1), PDB code: 6nbq:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 6nbq

Go back to Iron Binding Sites List in 6nbq
Iron binding site 1 out of 12 in the T.Elongatus Ndh (Data-Set 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of T.Elongatus Ndh (Data-Set 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe301

b:30.4
occ:1.00
 FE1 K:SF4301 0.0 30.4 1.0
S3 K:SF4301 2.3 30.4 1.0
S4 K:SF4301 2.3 30.4 1.0
S2 K:SF4301 2.3 30.4 1.0
FE2 K:SF4301 2.7 30.4 1.0
FE4 K:SF4301 2.7 30.4 1.0
FE3 K:SF4301 2.7 30.4 1.0
CB K:CYS53 3.2 28.9 1.0
SG K:CYS53 3.4 28.9 1.0
S1 K:SF4301 3.9 30.4 1.0
CA K:GLY115 4.0 24.3 1.0
CA K:CYS53 4.1 28.9 1.0
N K:CYS53 4.3 28.9 1.0
N K:ALA116 4.6 26.8 1.0
O K:MET114 4.6 39.1 1.0
C K:GLY115 4.7 24.3 1.0
CA K:PRO149 4.7 26.9 1.0
CA K:CYS148 4.8 31.0 1.0
O K:GLY147 4.9 26.6 1.0
N K:CYS117 4.9 29.1 1.0
CB K:CYS117 4.9 29.1 1.0
N K:GLY115 5.0 24.3 1.0

Iron binding site 2 out of 12 in 6nbq

Go back to Iron Binding Sites List in 6nbq
Iron binding site 2 out of 12 in the T.Elongatus Ndh (Data-Set 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of T.Elongatus Ndh (Data-Set 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe301

b:30.4
occ:1.00
 FE2 K:SF4301 0.0 30.4 1.0
S4 K:SF4301 2.3 30.4 1.0
S1 K:SF4301 2.3 30.4 1.0
S3 K:SF4301 2.3 30.4 1.0
FE3 K:SF4301 2.7 30.4 1.0
FE4 K:SF4301 2.7 30.4 1.0
FE1 K:SF4301 2.7 30.4 1.0
SG K:CYS148 3.0 31.0 1.0
S2 K:SF4301 3.9 30.4 1.0
CB K:CYS148 3.9 31.0 1.0
CA K:CYS148 4.0 31.0 1.0
C K:CYS148 4.3 31.0 1.0
NH2 H:ARG69 4.5 45.0 1.0
N K:PRO149 4.5 26.9 1.0
CZ H:ARG69 4.6 45.0 1.0
SG K:CYS52 4.7 28.4 1.0
CA K:PRO149 4.8 26.9 1.0
CB K:CYS52 4.8 28.4 1.0
NE H:ARG69 4.8 45.0 1.0
SG K:CYS117 4.8 29.1 1.0
CG H:ARG69 4.9 45.0 1.0
O K:CYS148 4.9 31.0 1.0
NH1 H:ARG69 4.9 45.0 1.0

Iron binding site 3 out of 12 in 6nbq

Go back to Iron Binding Sites List in 6nbq
Iron binding site 3 out of 12 in the T.Elongatus Ndh (Data-Set 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of T.Elongatus Ndh (Data-Set 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe301

b:30.4
occ:1.00
 FE3 K:SF4301 0.0 30.4 1.0
S1 K:SF4301 2.3 30.4 1.0
S2 K:SF4301 2.3 30.4 1.0
S4 K:SF4301 2.3 30.4 1.0
FE2 K:SF4301 2.7 30.4 1.0
FE4 K:SF4301 2.7 30.4 1.0
FE1 K:SF4301 2.7 30.4 1.0
CB K:CYS52 3.1 28.4 1.0
SG K:CYS52 3.1 28.4 1.0
N K:CYS52 3.3 28.4 1.0
N K:CYS53 3.5 28.9 1.0
CA K:CYS52 3.6 28.4 1.0
CB K:ALA51 3.8 27.5 1.0
S3 K:SF4301 3.9 30.4 1.0
C K:CYS52 3.9 28.4 1.0
CB K:CYS53 4.1 28.9 1.0
C K:ALA51 4.3 27.5 1.0
CA K:CYS53 4.3 28.9 1.0
OG1 K:THR89 4.7 27.9 1.0
CA K:ALA51 4.7 27.5 1.0
O K:CYS52 4.9 28.4 1.0

Iron binding site 4 out of 12 in 6nbq

Go back to Iron Binding Sites List in 6nbq
Iron binding site 4 out of 12 in the T.Elongatus Ndh (Data-Set 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of T.Elongatus Ndh (Data-Set 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe301

b:30.4
occ:1.00
 FE4 K:SF4301 0.0 30.4 1.0
S2 K:SF4301 2.3 30.4 1.0
S1 K:SF4301 2.3 30.4 1.0
S3 K:SF4301 2.3 30.4 1.0
FE3 K:SF4301 2.7 30.4 1.0
FE2 K:SF4301 2.7 30.4 1.0
FE1 K:SF4301 2.7 30.4 1.0
SG K:CYS117 3.0 29.1 1.0
CB K:CYS117 3.1 29.1 1.0
OG1 K:THR89 3.3 27.9 1.0
S4 K:SF4301 3.9 30.4 1.0
N K:CYS117 4.2 29.1 1.0
CA K:CYS117 4.3 29.1 1.0
CE2 K:PHE124 4.6 50.2 1.0
CB K:THR89 4.6 27.9 1.0
N K:THR89 4.7 27.9 1.0
CB K:ALA51 4.9 27.5 1.0

Iron binding site 5 out of 12 in 6nbq

Go back to Iron Binding Sites List in 6nbq
Iron binding site 5 out of 12 in the T.Elongatus Ndh (Data-Set 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of T.Elongatus Ndh (Data-Set 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:37.4
occ:1.00
 FE1 I:SF4201 0.0 37.4 1.0
S2 I:SF4201 2.3 37.4 1.0
S4 I:SF4201 2.3 37.4 1.0
S3 I:SF4201 2.3 37.4 1.0
FE4 I:SF4201 2.7 37.4 1.0
FE3 I:SF4201 2.7 37.4 1.0
FE2 I:SF4201 2.7 37.4 1.0
SG I:CYS106 3.0 30.3 1.0
N I:ALA107 3.1 33.0 1.0
O I:ILE104 3.1 33.6 1.0
N I:CYS106 3.4 30.3 1.0
CA I:ALA107 3.8 33.0 1.0
S1 I:SF4201 3.9 37.4 1.0
C I:CYS106 3.9 30.3 1.0
CA I:CYS106 4.0 30.3 1.0
CB I:CYS106 4.0 30.3 1.0
N I:ASN108 4.1 34.5 1.0
C I:ILE104 4.2 33.6 1.0
C I:PHE105 4.3 36.4 1.0
CA I:PHE105 4.5 36.4 1.0
C I:ALA107 4.5 33.0 1.0
CG1 I:ILE104 4.7 33.6 1.0
N I:PHE105 4.8 36.4 1.0
CD I:PRO74 4.8 34.8 1.0

Iron binding site 6 out of 12 in 6nbq

Go back to Iron Binding Sites List in 6nbq
Iron binding site 6 out of 12 in the T.Elongatus Ndh (Data-Set 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of T.Elongatus Ndh (Data-Set 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:37.4
occ:1.00
 FE2 I:SF4201 0.0 37.4 1.0
S1 I:SF4201 2.3 37.4 1.0
S3 I:SF4201 2.3 37.4 1.0
S4 I:SF4201 2.3 37.4 1.0
FE4 I:SF4201 2.7 37.4 1.0
FE1 I:SF4201 2.7 37.4 1.0
FE3 I:SF4201 2.7 37.4 1.0
SG I:CYS103 3.1 40.5 1.0
O I:ILE104 3.4 33.6 1.0
CB I:CYS103 3.9 40.5 1.0
S2 I:SF4201 3.9 37.4 1.0
CA I:CYS103 3.9 40.5 1.0
CD2 I:LEU77 4.0 50.2 1.0
N I:ILE104 4.5 33.6 1.0
C I:ILE104 4.5 33.6 1.0
CB I:LEU77 4.5 50.2 1.0
CG2 I:ILE98 4.5 42.5 1.0
SG I:CYS73 4.7 36.7 1.0
C I:CYS103 4.7 40.5 1.0
CG I:LEU77 4.9 50.2 1.0

Iron binding site 7 out of 12 in 6nbq

Go back to Iron Binding Sites List in 6nbq
Iron binding site 7 out of 12 in the T.Elongatus Ndh (Data-Set 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of T.Elongatus Ndh (Data-Set 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:37.4
occ:1.00
 FE3 I:SF4201 0.0 37.4 1.0
S4 I:SF4201 2.3 37.4 1.0
S1 I:SF4201 2.3 37.4 1.0
S2 I:SF4201 2.3 37.4 1.0
FE4 I:SF4201 2.7 37.4 1.0
FE1 I:SF4201 2.7 37.4 1.0
FE2 I:SF4201 2.7 37.4 1.0
SG I:CYS109 3.0 40.4 1.0
CB I:CYS109 3.8 40.4 1.0
S3 I:SF4201 3.9 37.4 1.0
CD1 I:ILE56 4.3 41.7 1.0
N I:CYS109 4.4 40.4 1.0
CG1 I:ILE56 4.4 41.7 1.0
CA I:ALA107 4.7 33.0 1.0
N I:ALA107 4.7 33.0 1.0
CD1 I:ILE98 4.8 42.5 1.0
CA I:CYS109 4.8 40.4 1.0
SG I:CYS103 4.8 40.5 1.0
CG2 I:ILE98 4.9 42.5 1.0
N I:ASN108 5.0 34.5 1.0

Iron binding site 8 out of 12 in 6nbq

Go back to Iron Binding Sites List in 6nbq
Iron binding site 8 out of 12 in the T.Elongatus Ndh (Data-Set 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of T.Elongatus Ndh (Data-Set 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:37.4
occ:1.00
 FE4 I:SF4201 0.0 37.4 1.0
S3 I:SF4201 2.3 37.4 1.0
S2 I:SF4201 2.3 37.4 1.0
S1 I:SF4201 2.3 37.4 1.0
FE3 I:SF4201 2.7 37.4 1.0
FE1 I:SF4201 2.7 37.4 1.0
FE2 I:SF4201 2.7 37.4 1.0
SG I:CYS73 3.0 36.7 1.0
CB I:CYS73 3.2 36.7 1.0
CA I:CYS73 3.6 36.7 1.0
CD I:PRO74 3.8 34.8 1.0
S4 I:SF4201 3.9 37.4 1.0
SG I:CYS106 4.3 30.3 1.0
N I:PRO74 4.5 34.8 1.0
C I:CYS73 4.5 36.7 1.0
N I:CYS73 4.7 36.7 1.0
CB I:LEU77 4.8 50.2 1.0
CD I:PRO78 4.9 42.3 1.0
CB I:CYS109 4.9 40.4 1.0
N I:CYS109 4.9 40.4 1.0

Iron binding site 9 out of 12 in 6nbq

Go back to Iron Binding Sites List in 6nbq
Iron binding site 9 out of 12 in the T.Elongatus Ndh (Data-Set 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of T.Elongatus Ndh (Data-Set 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:57.0
occ:1.00
 FE1 I:SF4202 0.0 57.0 1.0
S4 I:SF4202 2.3 57.0 1.0
S3 I:SF4202 2.3 57.0 1.0
S2 I:SF4202 2.3 57.0 1.0
FE2 I:SF4202 2.7 57.0 1.0
FE4 I:SF4202 2.7 57.0 1.0
FE3 I:SF4202 2.7 57.0 1.0
CB I:CYS66 3.2 48.3 1.0
N I:CYS66 3.9 48.3 1.0
S1 I:SF4202 3.9 57.0 1.0
SG I:CYS66 3.9 48.3 1.0
CA I:CYS66 4.0 48.3 1.0
CD I:PRO114 4.0 53.1 1.0
N I:GLU67 4.1 43.4 1.0
N I:VAL68 4.2 40.5 1.0
CG2 I:VAL68 4.2 40.5 1.0
CG I:PRO114 4.3 53.1 1.0
C I:CYS66 4.4 48.3 1.0
CB I:VAL68 4.4 40.5 1.0
N I:CYS69 4.8 41.5 1.0
CA I:VAL68 4.8 40.5 1.0

Iron binding site 10 out of 12 in 6nbq

Go back to Iron Binding Sites List in 6nbq
Iron binding site 10 out of 12 in the T.Elongatus Ndh (Data-Set 1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of T.Elongatus Ndh (Data-Set 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:57.0
occ:1.00
 FE2 I:SF4202 0.0 57.0 1.0
S3 I:SF4202 2.3 57.0 1.0
S1 I:SF4202 2.3 57.0 1.0
S4 I:SF4202 2.3 57.0 1.0
FE4 I:SF4202 2.7 57.0 1.0
FE1 I:SF4202 2.7 57.0 1.0
FE3 I:SF4202 2.7 57.0 1.0
SG I:CYS69 3.1 41.5 1.0
CB I:CYS69 3.8 41.5 1.0
S2 I:SF4202 3.9 57.0 1.0
CD1 I:LEU118 4.2 43.7 1.0
N I:CYS69 4.3 41.5 1.0
SG I:CYS63 4.3 55.8 1.0
CE1 I:TYR96 4.5 45.2 1.0
N I:GLU67 4.6 43.4 1.0
OH I:TYR96 4.6 45.2 1.0
CA I:CYS69 4.7 41.5 1.0
N I:VAL68 4.8 40.5 1.0
CA I:GLU67 5.0 43.4 1.0
CG2 I:VAL80 5.0 47.5 1.0
CZ I:TYR96 5.0 45.2 1.0

Reference:

T.G.Laughlin, A.N.Bayne, J.F.Trempe, D.F.Savage, K.M.Davies. Structure of the Complex I-Like Molecule Ndh of Oxygenic Photosynthesis. Nature V. 566 411 2019.
ISSN: ESSN 1476-4687
PubMed: 30742075
DOI: 10.1038/S41586-019-0921-0
Page generated: Wed Aug 7 02:57:04 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy