Iron in PDB 6nef: Outer Membrane Cytochrome S Filament From Geobacter Sulfurreducens

The structure of Outer Membrane Cytochrome S Filament From Geobacter Sulfurreducens also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Iron atom in the Outer Membrane Cytochrome S Filament From Geobacter Sulfurreducens (pdb code 6nef). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Outer Membrane Cytochrome S Filament From Geobacter Sulfurreducens, PDB code: 6nef:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in the Outer Membrane Cytochrome S Filament From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Outer Membrane Cytochrome S Filament From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:79.8 occ:1.00 FE A:HEC501 0.0 79.8 1.0 NB A:HEC501 2.0 92.9 1.0 NA A:HEC501 2.0 0.0 1.0 ND A:HEC501 2.1 80.9 1.0 NC A:HEC501 2.2 35.7 1.0 NE2 A:HIS38 2.4 0.5 1.0 NE2 A:HIS172 2.6 36.9 1.0 CE1 A:HIS38 2.8 74.1 1.0 C1B A:HEC501 3.0 27.5 1.0 C4A A:HEC501 3.0 75.8 1.0 C4D A:HEC501 3.0 26.3 1.0 C1A A:HEC501 3.1 42.6 1.0 C4B A:HEC501 3.1 68.5 1.0 C1D A:HEC501 3.1 68.1 1.0 C4C A:HEC501 3.2 0.7 1.0 C1C A:HEC501 3.2 98.2 1.0 CHB A:HEC501 3.3 0.2 1.0 CD2 A:HIS172 3.4 37.8 1.0 CHA A:HEC501 3.4 67.2 1.0 CHD A:HEC501 3.5 59.3 1.0 CD2 A:HIS38 3.5 30.7 1.0 CHC A:HEC501 3.5 47.7 1.0 CE1 A:HIS172 3.7 0.3 1.0 ND1 A:HIS38 4.0 21.9 1.0 C2B A:HEC501 4.2 50.1 1.0 C3B A:HEC501 4.2 30.1 1.0 C3D A:HEC501 4.3 0.3 1.0 C2A A:HEC501 4.3 0.1 1.0 C2D A:HEC501 4.3 23.1 1.0 C3A A:HEC501 4.3 2.3 1.0 CG A:HIS38 4.4 27.6 1.0 C3C A:HEC501 4.4 2.3 1.0 C2C A:HEC501 4.4 68.9 1.0 CG A:HIS172 4.6 61.4 1.0 ND1 A:HIS172 4.7 58.7 1.0

Iron binding site 2 out of 6 in the Outer Membrane Cytochrome S Filament From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Outer Membrane Cytochrome S Filament From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:76.2 occ:1.00 FE A:HEC502 0.0 76.2 1.0 ND A:HEC502 1.9 77.5 1.0 NA A:HEC502 2.0 60.7 1.0 NB A:HEC502 2.1 70.6 1.0 NC A:HEC502 2.1 91.8 1.0 CE1 A:HIS27 2.5 90.1 1.0 NE2 A:HIS76 2.7 24.5 1.0 C4D A:HEC502 2.9 67.2 1.0 C1D A:HEC502 2.9 43.0 1.0 C1A A:HEC502 3.0 72.9 1.0 ND1 A:HIS27 3.0 63.8 1.0 C4A A:HEC502 3.1 17.2 1.0 CE1 A:HIS76 3.1 81.7 1.0 C4C A:HEC502 3.1 71.2 1.0 C1B A:HEC502 3.1 91.5 1.0 C4B A:HEC502 3.1 32.4 1.0 C1C A:HEC502 3.2 69.6 1.0 NE2 A:HIS27 3.3 0.1 1.0 CHA A:HEC502 3.3 41.2 1.0 CHD A:HEC502 3.4 55.4 1.0 CHB A:HEC502 3.4 34.7 1.0 CHC A:HEC502 3.5 27.9 1.0 CD2 A:HIS76 4.0 92.2 1.0 CG A:HIS27 4.0 2.3 1.0 C3D A:HEC502 4.1 40.6 1.0 C2D A:HEC502 4.1 29.3 1.0 CD2 A:HIS27 4.2 0.5 1.0 C2A A:HEC502 4.2 23.5 1.0 C3A A:HEC502 4.3 49.4 1.0 C3B A:HEC502 4.3 60.0 1.0 C3C A:HEC502 4.3 32.5 1.0 C2B A:HEC502 4.3 2.3 1.0 ND1 A:HIS76 4.4 60.0 1.0 C2C A:HEC502 4.4 23.8 1.0 CG A:HIS76 4.8 76.3 1.0 CD2 A:PHE26 4.8 0.2 1.0

Iron binding site 3 out of 6 in the Outer Membrane Cytochrome S Filament From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Outer Membrane Cytochrome S Filament From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe503 b:75.5 occ:1.00 FE A:HEC503 0.0 75.5 1.0 ND A:HEC503 2.0 29.1 1.0 NB A:HEC503 2.0 33.0 1.0 NC A:HEC503 2.0 96.1 1.0 NA A:HEC503 2.0 58.4 1.0 CE1 A:HIS360 2.5 27.9 1.0 NE2 A:HIS169 2.8 25.8 1.0 C4D A:HEC503 3.0 64.2 1.0 C1C A:HEC503 3.0 28.2 1.0 C1B A:HEC503 3.0 21.0 1.0 C4B A:HEC503 3.0 0.4 1.0 C4A A:HEC503 3.0 37.5 1.0 C1D A:HEC503 3.0 78.4 1.0 C1A A:HEC503 3.1 41.9 1.0 CD2 A:HIS169 3.1 32.8 1.0 C4C A:HEC503 3.1 34.9 1.0 NE2 A:HIS360 3.2 0.5 1.0 CHA A:HEC503 3.3 44.8 1.0 CHB A:HEC503 3.4 0.1 1.0 CHC A:HEC503 3.4 30.7 1.0 CHD A:HEC503 3.5 32.2 1.0 ND1 A:HIS360 3.5 39.9 1.0 CE1 A:HIS169 4.1 0.7 1.0 C3D A:HEC503 4.2 2.3 1.0 C2D A:HEC503 4.2 52.6 1.0 C2C A:HEC503 4.2 5.0 1.0 C2B A:HEC503 4.2 2.3 1.0 C3B A:HEC503 4.3 28.6 1.0 C3A A:HEC503 4.3 62.8 1.0 C2A A:HEC503 4.3 55.1 1.0 C3C A:HEC503 4.3 37.0 1.0 CD2 A:HIS360 4.4 42.2 1.0 CG A:HIS169 4.4 30.0 1.0 CG A:HIS360 4.5 38.9 1.0 ND1 A:HIS169 4.9 37.0 1.0

Iron binding site 4 out of 6 in the Outer Membrane Cytochrome S Filament From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Outer Membrane Cytochrome S Filament From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe504 b:80.3 occ:1.00 FE A:HEC504 0.0 80.3 1.0 NA A:HEC504 2.0 42.0 1.0 NB A:HEC504 2.0 73.9 1.0 NC A:HEC504 2.1 17.3 1.0 ND A:HEC504 2.1 81.2 1.0 NE2 A:HIS135 2.5 52.2 1.0 NE2 A:HIS268 2.6 45.8 1.0 CD2 A:HIS135 3.0 78.5 1.0 C4B A:HEC504 3.0 39.9 1.0 C1A A:HEC504 3.0 68.1 1.0 C1C A:HEC504 3.0 29.1 1.0 C4A A:HEC504 3.0 51.2 1.0 C1B A:HEC504 3.1 10.0 1.0 C4D A:HEC504 3.1 2.5 1.0 C4C A:HEC504 3.2 0.2 1.0 C1D A:HEC504 3.2 91.2 1.0 CHC A:HEC504 3.3 34.5 1.0 CE1 A:HIS268 3.4 75.7 1.0 CHA A:HEC504 3.4 64.1 1.0 CHB A:HEC504 3.4 57.6 1.0 CHD A:HEC504 3.6 2.3 1.0 CD2 A:HIS268 3.6 33.4 1.0 CE1 A:HIS135 3.7 0.8 1.0 C2A A:HEC504 4.2 37.2 1.0 C3B A:HEC504 4.2 20.1 1.0 C3A A:HEC504 4.2 44.1 1.0 CG A:HIS135 4.3 10.7 1.0 C2C A:HEC504 4.3 45.2 1.0 C2B A:HEC504 4.3 10.3 1.0 C3D A:HEC504 4.3 45.7 1.0 C3C A:HEC504 4.3 13.7 1.0 C2D A:HEC504 4.4 54.6 1.0 ND1 A:HIS135 4.6 46.6 1.0 ND1 A:HIS268 4.6 58.7 1.0 CG A:HIS268 4.7 0.5 1.0

Iron binding site 5 out of 6 in the Outer Membrane Cytochrome S Filament From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Outer Membrane Cytochrome S Filament From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe505 b:70.2 occ:1.00 FE A:HEC505 0.0 70.2 1.0 NC A:HEC505 2.0 48.8 1.0 NB A:HEC505 2.1 84.4 1.0 ND A:HEC505 2.1 0.2 1.0 NA A:HEC505 2.2 80.8 1.0 NE2 A:HIS357 2.7 12.2 1.0 C4C A:HEC505 2.9 63.7 1.0 C4B A:HEC505 3.0 0.1 1.0 C1D A:HEC505 3.0 18.8 1.0 C1B A:HEC505 3.1 2.3 1.0 C1C A:HEC505 3.1 0.4 1.0 C4D A:HEC505 3.1 0.6 1.0 C1A A:HEC505 3.1 50.7 1.0 C4A A:HEC505 3.2 57.0 1.0 CD2 A:HIS357 3.2 0.6 1.0 CHD A:HEC505 3.2 20.8 1.0 CHC A:HEC505 3.5 2.3 1.0 CHA A:HEC505 3.5 2.3 1.0 CHB A:HEC505 3.5 0.5 1.0 CE1 A:HIS357 3.8 0.3 1.0 C3C A:HEC505 4.1 15.1 1.0 C3B A:HEC505 4.2 2.3 1.0 C2B A:HEC505 4.2 0.5 1.0 C2C A:HEC505 4.2 31.4 1.0 C2D A:HEC505 4.2 16.8 1.0 C3D A:HEC505 4.3 2.3 1.0 C2A A:HEC505 4.3 39.5 1.0 C3A A:HEC505 4.4 2.3 1.0 CG A:HIS357 4.5 34.1 1.0 ND1 A:HIS357 4.8 73.6 1.0

Iron binding site 6 out of 6 in the Outer Membrane Cytochrome S Filament From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Outer Membrane Cytochrome S Filament From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe506 b:72.7 occ:1.00 FE A:HEC506 0.0 72.7 1.0 NA A:HEC506 2.0 41.2 1.0 NB A:HEC506 2.0 31.2 1.0 NC A:HEC506 2.1 82.1 1.0 ND A:HEC506 2.1 53.9 1.0 NE2 A:HIS282 2.5 31.2 1.0 NE2 A:HIS429 2.6 0.3 1.0 CD2 A:HIS429 2.9 36.7 1.0 C1A A:HEC506 3.0 80.4 1.0 C1B A:HEC506 3.0 72.3 1.0 C4D A:HEC506 3.0 80.4 1.0 C4A A:HEC506 3.0 97.5 1.0 C4B A:HEC506 3.1 49.8 1.0 C4C A:HEC506 3.1 38.6 1.0 C1C A:HEC506 3.1 27.1 1.0 C1D A:HEC506 3.1 82.6 1.0 CE1 A:HIS282 3.2 0.6 1.0 CHA A:HEC506 3.3 60.9 1.0 CHB A:HEC506 3.4 20.1 1.0 CD2 A:HIS282 3.5 97.6 1.0 CHC A:HEC506 3.5 11.5 1.0 CHD A:HEC506 3.5 63.6 1.0 CE1 A:HIS429 3.9 0.5 1.0 C2A A:HEC506 4.2 96.9 1.0 C3D A:HEC506 4.2 70.6 1.0 C3A A:HEC506 4.2 2.3 1.0 C2B A:HEC506 4.2 27.3 1.0 CG A:HIS429 4.2 0.7 1.0 C2D A:HEC506 4.2 2.3 1.0 C3B A:HEC506 4.3 31.0 1.0 C2C A:HEC506 4.3 17.8 1.0 C3C A:HEC506 4.3 46.6 1.0 ND1 A:HIS282 4.3 71.6 1.0 CG A:HIS282 4.5 7.2 1.0 ND1 A:HIS429 4.7 46.4 1.0

D.J.Filman, S.F.Marino, J.E.Ward, L.Yang, Z.Mester, E.Bullitt, D.R.Lovley, M.Strauss. Cryo-Em Reveals the Structural Basis of Long-Range Electron Transport in A Cytochrome-Based Bacterial Nanowire. Commun Biol V. 2 219 2019.
ISSN: ESSN 2399-3642
PubMed: 31240257
DOI: 10.1038/S42003-019-0448-9