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Iron in PDB 6nzj: Structural Analysis of A Nitrogenase Iron Protein From Methanosarcina Acetivorans: Implications For CO2 Capture By A Surface-Exposed [FE4S4] Cluster

Enzymatic activity of Structural Analysis of A Nitrogenase Iron Protein From Methanosarcina Acetivorans: Implications For CO2 Capture By A Surface-Exposed [FE4S4] Cluster

All present enzymatic activity of Structural Analysis of A Nitrogenase Iron Protein From Methanosarcina Acetivorans: Implications For CO2 Capture By A Surface-Exposed [FE4S4] Cluster:
1.18.6.1;

Protein crystallography data

The structure of Structural Analysis of A Nitrogenase Iron Protein From Methanosarcina Acetivorans: Implications For CO2 Capture By A Surface-Exposed [FE4S4] Cluster, PDB code: 6nzj was solved by L.A.Rettberg, W.Kang, M.T.Stiebritz, C.J.Hiller, C.C.Lee, J.Liedtke, M.W.Ribbe, Y.Hu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 83.29 / 2.40
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 96.169, 96.169, 320.244, 90.00, 90.00, 120.00
R / Rfree (%) 18.6 / 21.6

Iron Binding Sites:

The binding sites of Iron atom in the Structural Analysis of A Nitrogenase Iron Protein From Methanosarcina Acetivorans: Implications For CO2 Capture By A Surface-Exposed [FE4S4] Cluster (pdb code 6nzj). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Structural Analysis of A Nitrogenase Iron Protein From Methanosarcina Acetivorans: Implications For CO2 Capture By A Surface-Exposed [FE4S4] Cluster, PDB code: 6nzj:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 6nzj

Go back to Iron Binding Sites List in 6nzj
Iron binding site 1 out of 4 in the Structural Analysis of A Nitrogenase Iron Protein From Methanosarcina Acetivorans: Implications For CO2 Capture By A Surface-Exposed [FE4S4] Cluster


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structural Analysis of A Nitrogenase Iron Protein From Methanosarcina Acetivorans: Implications For CO2 Capture By A Surface-Exposed [FE4S4] Cluster within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:31.3
occ:1.00
 FE1 A:SF4301 0.0 31.3 1.0
S3 A:SF4301 2.3 30.9 1.0
S4 A:SF4301 2.3 32.0 1.0
S2 A:SF4301 2.3 32.1 1.0
SG A:CYS130 2.3 33.2 1.0
FE2 A:SF4301 2.7 32.7 1.0
FE4 A:SF4301 2.7 31.0 1.0
FE3 A:SF4301 2.7 31.4 1.0
CB A:CYS130 3.2 33.6 1.0
S1 A:SF4301 3.9 31.6 1.0
N A:GLY132 4.2 32.8 1.0
CA A:GLY132 4.3 33.9 1.0
CA A:CYS130 4.6 34.7 1.0
CD2 A:PHE133 4.7 25.1 1.0
SG A:CYS95 4.7 31.7 1.0
N B:ALA96 4.8 36.1 1.0
SG B:CYS95 4.8 35.0 1.0
SG B:CYS130 4.8 32.9 1.0
N A:PHE133 4.9 32.6 1.0
C A:CYS130 4.9 33.1 1.0
CA B:CYS95 4.9 31.9 1.0
N A:GLY131 5.0 36.0 1.0

Iron binding site 2 out of 4 in 6nzj

Go back to Iron Binding Sites List in 6nzj
Iron binding site 2 out of 4 in the Structural Analysis of A Nitrogenase Iron Protein From Methanosarcina Acetivorans: Implications For CO2 Capture By A Surface-Exposed [FE4S4] Cluster


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structural Analysis of A Nitrogenase Iron Protein From Methanosarcina Acetivorans: Implications For CO2 Capture By A Surface-Exposed [FE4S4] Cluster within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:32.7
occ:1.00
 FE2 A:SF4301 0.0 32.7 1.0
S4 A:SF4301 2.2 32.0 1.0
S3 A:SF4301 2.3 30.9 1.0
SG B:CYS95 2.3 35.0 1.0
S1 A:SF4301 2.3 31.6 1.0
FE1 A:SF4301 2.7 31.3 1.0
FE3 A:SF4301 2.7 31.4 1.0
FE4 A:SF4301 2.7 31.0 1.0
CB B:CYS95 3.4 31.0 1.0
CA B:CYS95 3.7 31.9 1.0
S2 A:SF4301 3.9 32.1 1.0
N B:ALA96 3.9 36.1 1.0
C B:CYS95 4.2 38.2 1.0
N B:GLY97 4.5 36.3 1.0
CA B:GLY132 4.5 27.3 1.0
SG A:CYS95 4.7 31.7 1.0
SG B:CYS130 4.7 32.9 1.0
N B:GLY132 4.8 26.7 1.0
SG A:CYS130 4.8 33.2 1.0
CB A:CYS130 4.8 33.6 1.0

Iron binding site 3 out of 4 in 6nzj

Go back to Iron Binding Sites List in 6nzj
Iron binding site 3 out of 4 in the Structural Analysis of A Nitrogenase Iron Protein From Methanosarcina Acetivorans: Implications For CO2 Capture By A Surface-Exposed [FE4S4] Cluster


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structural Analysis of A Nitrogenase Iron Protein From Methanosarcina Acetivorans: Implications For CO2 Capture By A Surface-Exposed [FE4S4] Cluster within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:31.4
occ:1.00
 FE3 A:SF4301 0.0 31.4 1.0
S1 A:SF4301 2.2 31.6 1.0
SG A:CYS95 2.3 31.7 1.0
S2 A:SF4301 2.3 32.1 1.0
S4 A:SF4301 2.3 32.0 1.0
FE4 A:SF4301 2.7 31.0 1.0
FE2 A:SF4301 2.7 32.7 1.0
FE1 A:SF4301 2.7 31.3 1.0
CB A:CYS95 3.3 32.6 1.0
CA A:CYS95 3.7 29.8 1.0
N A:ALA96 3.8 33.8 1.0
S3 A:SF4301 3.9 30.9 1.0
C A:CYS95 4.2 36.8 1.0
CA A:GLY132 4.6 33.9 1.0
N A:GLY97 4.6 36.0 1.0
CB B:CYS130 4.6 32.7 1.0
SG B:CYS95 4.7 35.0 1.0
SG B:CYS130 4.8 32.9 1.0
SG A:CYS130 4.8 33.2 1.0
N A:GLY132 4.9 32.8 1.0
CA A:ALA96 5.0 35.1 1.0
N A:CYS95 5.0 37.4 1.0

Iron binding site 4 out of 4 in 6nzj

Go back to Iron Binding Sites List in 6nzj
Iron binding site 4 out of 4 in the Structural Analysis of A Nitrogenase Iron Protein From Methanosarcina Acetivorans: Implications For CO2 Capture By A Surface-Exposed [FE4S4] Cluster


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structural Analysis of A Nitrogenase Iron Protein From Methanosarcina Acetivorans: Implications For CO2 Capture By A Surface-Exposed [FE4S4] Cluster within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:31.0
occ:1.00
 FE4 A:SF4301 0.0 31.0 1.0
S1 A:SF4301 2.3 31.6 1.0
S2 A:SF4301 2.3 32.1 1.0
SG B:CYS130 2.3 32.9 1.0
S3 A:SF4301 2.3 30.9 1.0
FE3 A:SF4301 2.7 31.4 1.0
FE1 A:SF4301 2.7 31.3 1.0
FE2 A:SF4301 2.7 32.7 1.0
CB B:CYS130 3.0 32.7 1.0
S4 A:SF4301 3.9 32.0 1.0
N B:GLY132 4.2 26.7 1.0
CA B:CYS130 4.5 33.0 1.0
CA B:GLY132 4.5 27.3 1.0
CD2 B:PHE133 4.6 29.6 1.0
SG B:CYS95 4.8 35.0 1.0
SG A:CYS130 4.8 33.2 1.0
SG A:CYS95 4.8 31.7 1.0
C B:CYS130 4.9 32.9 1.0
N B:GLY131 4.9 37.1 1.0
N B:PHE133 4.9 29.4 1.0
CG1 B:VAL128 4.9 31.4 1.0
N A:ALA96 5.0 33.8 1.0
CA A:CYS95 5.0 29.8 1.0
CE2 B:PHE133 5.0 32.9 1.0

Reference:

L.A.Rettberg, W.Kang, M.T.Stiebritz, C.J.Hiller, C.C.Lee, J.Liedtke, M.W.Ribbe, Y.Hu. Structural Analysis of A Nitrogenase Iron Protein From Methanosarcina Acetivorans: Implications For CO2CAPTURE By A Surface-Exposed [FE4S4] Cluster. Mbio V. 10 2019.
ISSN: ESSN 2150-7511
PubMed: 31289188
DOI: 10.1128/MBIO.01497-19
Page generated: Wed Aug 7 04:03:05 2024

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