Iron in PDB 6nzx: Hadesarchaea YNP_N21 Cytochrome B5 Domain Protein (KUO41884.1)

Protein crystallography data

The structure of Hadesarchaea YNP_N21 Cytochrome B5 Domain Protein (KUO41884.1), PDB code: 6nzx was solved by S.L.Teakel, M.S.Marama, D.Aragao, J.K.Forwood, M.A.Cahill, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.90
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 72.170, 72.170, 22.810, 90.00, 90.00, 120.00
R / Rfree (%) 22.1 / 26.1

Iron Binding Sites:

The binding sites of Iron atom in the Hadesarchaea YNP_N21 Cytochrome B5 Domain Protein (KUO41884.1) (pdb code 6nzx). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Hadesarchaea YNP_N21 Cytochrome B5 Domain Protein (KUO41884.1), PDB code: 6nzx:

Iron binding site 1 out of 1 in 6nzx

Go back to Iron Binding Sites List in 6nzx
Iron binding site 1 out of 1 in the Hadesarchaea YNP_N21 Cytochrome B5 Domain Protein (KUO41884.1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Hadesarchaea YNP_N21 Cytochrome B5 Domain Protein (KUO41884.1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe101

b:24.5
occ:0.84
FE A:HEM101 0.0 24.5 0.8
NE2 A:HIS42 1.9 26.0 1.0
NE2 A:HIS61 1.9 32.3 1.0
NC A:HEM101 2.1 26.9 1.0
NA A:HEM101 2.1 29.2 1.0
NB A:HEM101 2.1 28.3 1.0
ND A:HEM101 2.1 27.6 1.0
CE1 A:HIS42 2.9 24.4 1.0
CE1 A:HIS61 2.9 31.9 1.0
CD2 A:HIS42 2.9 24.3 1.0
CD2 A:HIS61 2.9 34.9 1.0
C4C A:HEM101 3.1 25.6 1.0
C4B A:HEM101 3.1 28.7 1.0
C1A A:HEM101 3.1 31.7 1.0
C1C A:HEM101 3.1 26.4 1.0
C1D A:HEM101 3.1 27.9 1.0
C4A A:HEM101 3.1 28.5 1.0
C1B A:HEM101 3.1 27.8 1.0
C4D A:HEM101 3.1 29.1 1.0
CHC A:HEM101 3.4 28.6 1.0
CHD A:HEM101 3.4 27.3 1.0
CHB A:HEM101 3.5 29.6 1.0
CHA A:HEM101 3.5 29.6 1.0
ND1 A:HIS42 4.0 23.9 1.0
ND1 A:HIS61 4.0 35.8 1.0
CG A:HIS42 4.1 25.0 1.0
CG A:HIS61 4.1 36.9 1.0
C2C A:HEM101 4.3 26.4 1.0
C3A A:HEM101 4.3 33.0 1.0
C2D A:HEM101 4.3 29.6 1.0
C3C A:HEM101 4.4 27.2 1.0
C2B A:HEM101 4.4 29.1 1.0
C2A A:HEM101 4.4 35.3 1.0
C3D A:HEM101 4.4 28.8 1.0
C3B A:HEM101 4.4 28.9 1.0
CD2 A:HIS43 4.9 31.6 1.0
CB A:ALA59 4.9 36.9 1.0

Reference:

S.L.Teakel, M.S.Marama, D.Aragao, J.K.Forwood, M.A.Cahill. Hadesarchaea YNP_N21 Cytochrome B5 Domain Protein (KUO41884.1) To Be Published.
Page generated: Sun Dec 13 16:46:50 2020

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