Iron in PDB 6ojt: Crystal Structure of Sphingomonas Paucimobilis TMY1009 Lsda Phenylazophenol Complex

All present enzymatic activity of Crystal Structure of Sphingomonas Paucimobilis TMY1009 Lsda Phenylazophenol Complex:
1.13.11.43;

The structure of Crystal Structure of Sphingomonas Paucimobilis TMY1009 Lsda Phenylazophenol Complex, PDB code: 6ojt was solved by E.Kuatsjah, M.M.Verstraete, M.J.Kobylarz, A.K.N.Liu, M.E.P.Murphy, L.D.Eltis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	61.00 / 3.00
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	181.909, 181.909, 96.431, 90.00, 90.00, 120.00
R / Rfree (%)	21.1 / 24.1

The binding sites of Iron atom in the Crystal Structure of Sphingomonas Paucimobilis TMY1009 Lsda Phenylazophenol Complex (pdb code 6ojt). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Sphingomonas Paucimobilis TMY1009 Lsda Phenylazophenol Complex, PDB code: 6ojt:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure of Sphingomonas Paucimobilis TMY1009 Lsda Phenylazophenol Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Sphingomonas Paucimobilis TMY1009 Lsda Phenylazophenol Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe502 b:55.8 occ:0.30 NE2 B:HIS472 2.2 31.4 1.0 NE2 B:HIS218 2.3 52.5 1.0 NE2 B:HIS282 2.8 48.9 1.0 CE1 B:HIS218 2.8 58.0 1.0 CD2 B:HIS472 3.1 39.9 1.0 CE1 B:HIS472 3.2 33.4 1.0 N07 B:NSL501 3.5 77.9 1.0 CD2 B:HIS218 3.6 57.7 1.0 CE1 B:HIS282 3.6 52.2 1.0 NE2 B:HIS167 3.7 48.2 1.0 CD2 B:HIS282 3.8 45.4 1.0 CG2 B:THR121 4.0 39.4 1.0 ND1 B:HIS218 4.0 66.6 1.0 N08 B:NSL501 4.0 77.2 1.0 C10 B:NSL501 4.1 64.0 1.0 C04 B:NSL501 4.1 78.4 1.0 CG B:HIS472 4.2 49.1 1.0 C05 B:NSL501 4.3 79.6 1.0 ND1 B:HIS472 4.3 36.0 1.0 C09 B:NSL501 4.3 67.1 1.0 CE1 B:HIS167 4.4 46.6 1.0 CD2 B:LEU471 4.4 37.9 1.0 CG B:HIS218 4.5 54.7 1.0 CD1 B:LEU471 4.7 38.2 1.0 CD2 B:HIS167 4.7 47.1 1.0 ND1 B:HIS282 4.8 51.9 1.0 CB B:LEU471 4.9 37.2 1.0 CG B:LEU471 4.9 32.8 1.0 CG B:HIS282 4.9 49.9 1.0 C11 B:NSL501 5.0 59.9 1.0 C03 B:NSL501 5.0 64.4 1.0

Iron binding site 2 out of 2 in the Crystal Structure of Sphingomonas Paucimobilis TMY1009 Lsda Phenylazophenol Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Sphingomonas Paucimobilis TMY1009 Lsda Phenylazophenol Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:60.3 occ:0.30 NE2 A:HIS472 2.1 50.0 1.0 NE2 A:HIS218 2.1 61.4 1.0 NE2 A:HIS282 2.2 52.6 1.0 CE1 A:HIS218 2.8 67.0 1.0 NE2 A:HIS167 3.0 48.9 1.0 CE1 A:HIS472 3.1 44.1 1.0 CD2 A:HIS472 3.1 46.1 1.0 CD2 A:HIS282 3.2 44.5 1.0 CE1 A:HIS282 3.2 65.9 1.0 CD2 A:HIS218 3.3 62.2 1.0 CE1 A:HIS167 3.9 55.1 1.0 N07 A:NSL501 4.0 91.7 1.0 ND1 A:HIS218 4.0 72.9 1.0 CD2 A:HIS167 4.1 47.4 1.0 C04 A:NSL501 4.1 96.6 1.0 ND1 A:HIS472 4.2 41.5 1.0 CG A:HIS472 4.2 47.6 1.0 CG A:HIS218 4.3 64.1 1.0 ND1 A:HIS282 4.3 56.9 1.0 C05 A:NSL501 4.3 93.6 1.0 CG A:HIS282 4.3 48.4 1.0 N08 A:NSL501 4.4 86.4 1.0 CG2 A:THR121 4.7 49.0 1.0 C03 A:NSL501 4.8 83.2 1.0 CE1 A:PHE351 4.9 44.1 1.0 C09 A:NSL501 4.9 83.5 1.0 C10 A:NSL501 5.0 78.7 1.0

E.Kuatsjah, M.M.Verstraete, M.J.Kobylarz, A.K.N.Liu, M.E.P.Murphy, L.D.Eltis. Identification of Functionally Important Residues and Structural Features in A Bacterial Lignostilbene Dioxygenase. J.Biol.Chem. V. 294 12911 2019.
ISSN: ESSN 1083-351X
PubMed: 31292192
DOI: 10.1074/JBC.RA119.009428