Iron in PDB 6onc: Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated
Enzymatic activity of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated
All present enzymatic activity of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated:
1.2.7.4;
Protein crystallography data
The structure of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated, PDB code: 6onc
was solved by
E.C.Wittenborn,
S.E.Cohen,
C.L.Drennan,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
93.27 /
1.50
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
64.790,
144.150,
123.690,
90.00,
98.50,
90.00
|
R / Rfree (%)
|
15.4 /
17.8
|
Other elements in 6onc:
The structure of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Binding sites:
The binding sites of Iron atom in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated
(pdb code 6onc). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 40 binding sites of Iron where determined in the
Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated, PDB code: 6onc:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 40 in 6onc
Go back to
Iron Binding Sites List in 6onc
Iron binding site 1 out
of 40 in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe701
b:16.3
occ:1.00
|
FE1
|
A:SF4701
|
0.0
|
16.3
|
1.0
|
S2
|
A:SF4701
|
2.3
|
15.3
|
1.0
|
SG
|
A:CYS51
|
2.3
|
16.6
|
1.0
|
S4
|
A:SF4701
|
2.3
|
16.7
|
1.0
|
S3
|
A:SF4701
|
2.3
|
16.0
|
1.0
|
FE2
|
A:SF4701
|
2.7
|
16.2
|
1.0
|
FE4
|
A:SF4701
|
2.7
|
16.3
|
1.0
|
FE3
|
A:SF4701
|
2.7
|
15.9
|
1.0
|
CB
|
A:CYS51
|
3.1
|
15.1
|
1.0
|
NH2
|
A:ARG84
|
3.6
|
16.0
|
1.0
|
S1
|
A:SF4701
|
3.8
|
14.6
|
1.0
|
N
|
A:ASN53
|
4.1
|
16.3
|
1.0
|
C
|
A:CYS51
|
4.3
|
14.3
|
1.0
|
CB
|
A:ASN53
|
4.3
|
14.9
|
1.0
|
CA
|
A:CYS51
|
4.3
|
15.3
|
1.0
|
O
|
A:CYS51
|
4.4
|
16.0
|
1.0
|
CA
|
A:ASN53
|
4.6
|
14.0
|
1.0
|
N
|
A:ARG52
|
4.6
|
18.1
|
1.0
|
SG
|
A:CYS59
|
4.7
|
15.7
|
1.0
|
CZ
|
A:ARG84
|
4.7
|
17.7
|
1.0
|
N
|
A:CYS54
|
4.7
|
14.1
|
1.0
|
SG
|
A:CYS54
|
4.9
|
15.4
|
1.0
|
SG
|
A:CYS74
|
4.9
|
16.1
|
1.0
|
C
|
A:ASN53
|
4.9
|
15.0
|
1.0
|
CB
|
A:CYS59
|
5.0
|
15.9
|
1.0
|
CG
|
A:ASN53
|
5.0
|
19.8
|
1.0
|
|
Iron binding site 2 out
of 40 in 6onc
Go back to
Iron Binding Sites List in 6onc
Iron binding site 2 out
of 40 in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe701
b:16.2
occ:1.00
|
FE2
|
A:SF4701
|
0.0
|
16.2
|
1.0
|
SG
|
A:CYS59
|
2.3
|
15.7
|
1.0
|
S1
|
A:SF4701
|
2.3
|
14.6
|
1.0
|
S3
|
A:SF4701
|
2.3
|
16.0
|
1.0
|
S4
|
A:SF4701
|
2.3
|
16.7
|
1.0
|
FE1
|
A:SF4701
|
2.7
|
16.3
|
1.0
|
FE4
|
A:SF4701
|
2.7
|
16.3
|
1.0
|
FE3
|
A:SF4701
|
2.8
|
15.9
|
1.0
|
CB
|
A:CYS59
|
3.3
|
15.9
|
1.0
|
S2
|
A:SF4701
|
3.9
|
15.3
|
1.0
|
N
|
A:VAL73
|
3.9
|
16.6
|
1.0
|
CA
|
A:GLY57
|
4.1
|
15.7
|
1.0
|
N
|
A:GLY57
|
4.3
|
16.0
|
1.0
|
N
|
A:CYS59
|
4.3
|
15.6
|
1.0
|
CA
|
A:GLY72
|
4.4
|
17.3
|
1.0
|
CA
|
A:CYS59
|
4.4
|
15.6
|
1.0
|
CB
|
A:CYS51
|
4.6
|
15.1
|
1.0
|
SG
|
A:CYS51
|
4.6
|
16.6
|
1.0
|
C
|
A:GLY72
|
4.6
|
17.4
|
1.0
|
SG
|
A:CYS54
|
4.7
|
15.4
|
1.0
|
CB
|
A:VAL73
|
4.7
|
17.2
|
1.0
|
O
|
A:CYS51
|
4.7
|
16.0
|
1.0
|
N
|
A:CYS74
|
4.8
|
15.1
|
1.0
|
SG
|
A:CYS74
|
4.8
|
16.1
|
1.0
|
CA
|
A:VAL73
|
4.8
|
16.0
|
1.0
|
C
|
A:PRO58
|
4.9
|
15.4
|
1.0
|
CG2
|
A:VAL73
|
5.0
|
14.8
|
1.0
|
|
Iron binding site 3 out
of 40 in 6onc
Go back to
Iron Binding Sites List in 6onc
Iron binding site 3 out
of 40 in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe701
b:15.9
occ:1.00
|
FE3
|
A:SF4701
|
0.0
|
15.9
|
1.0
|
S4
|
A:SF4701
|
2.3
|
16.7
|
1.0
|
SG
|
A:CYS74
|
2.3
|
16.1
|
1.0
|
S2
|
A:SF4701
|
2.3
|
15.3
|
1.0
|
S1
|
A:SF4701
|
2.3
|
14.6
|
1.0
|
FE1
|
A:SF4701
|
2.7
|
16.3
|
1.0
|
FE2
|
A:SF4701
|
2.8
|
16.2
|
1.0
|
FE4
|
A:SF4701
|
2.8
|
16.3
|
1.0
|
CB
|
A:CYS74
|
3.4
|
14.3
|
1.0
|
N
|
A:CYS74
|
3.9
|
15.1
|
1.0
|
S3
|
A:SF4701
|
3.9
|
16.0
|
1.0
|
NH2
|
A:ARG84
|
4.0
|
16.0
|
1.0
|
CA
|
A:CYS74
|
4.2
|
14.4
|
1.0
|
CG
|
A:MET203
|
4.3
|
15.6
|
1.0
|
SG
|
A:CYS54
|
4.6
|
15.4
|
1.0
|
CB
|
A:ALA76
|
4.6
|
14.3
|
1.0
|
N
|
A:VAL73
|
4.6
|
16.6
|
1.0
|
O
|
A:HOH984
|
4.7
|
14.8
|
1.0
|
SG
|
A:CYS59
|
4.8
|
15.7
|
1.0
|
SG
|
A:CYS51
|
4.8
|
16.6
|
1.0
|
CA
|
A:GLY72
|
5.0
|
17.3
|
1.0
|
C
|
A:GLY72
|
5.0
|
17.4
|
1.0
|
|
Iron binding site 4 out
of 40 in 6onc
Go back to
Iron Binding Sites List in 6onc
Iron binding site 4 out
of 40 in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe701
b:16.3
occ:1.00
|
FE4
|
A:SF4701
|
0.0
|
16.3
|
1.0
|
SG
|
A:CYS54
|
2.3
|
15.4
|
1.0
|
S3
|
A:SF4701
|
2.3
|
16.0
|
1.0
|
S2
|
A:SF4701
|
2.3
|
15.3
|
1.0
|
S1
|
A:SF4701
|
2.3
|
14.6
|
1.0
|
FE1
|
A:SF4701
|
2.7
|
16.3
|
1.0
|
FE2
|
A:SF4701
|
2.7
|
16.2
|
1.0
|
FE3
|
A:SF4701
|
2.8
|
15.9
|
1.0
|
CB
|
A:CYS54
|
3.4
|
14.1
|
1.0
|
N
|
A:CYS54
|
3.6
|
14.1
|
1.0
|
S4
|
A:SF4701
|
3.9
|
16.7
|
1.0
|
CA
|
A:CYS54
|
3.9
|
14.8
|
1.0
|
O
|
A:CYS54
|
4.0
|
16.8
|
1.0
|
C
|
A:CYS54
|
4.2
|
14.2
|
1.0
|
N
|
A:GLY57
|
4.2
|
16.0
|
1.0
|
C
|
A:ASN53
|
4.3
|
15.0
|
1.0
|
CG
|
A:MET203
|
4.6
|
15.6
|
1.0
|
CA
|
A:GLY57
|
4.7
|
15.7
|
1.0
|
N
|
A:ASN53
|
4.7
|
16.3
|
1.0
|
CB
|
A:MET56
|
4.7
|
16.9
|
1.0
|
SG
|
A:CYS51
|
4.8
|
16.6
|
1.0
|
SG
|
A:CYS74
|
4.8
|
16.1
|
1.0
|
SG
|
A:CYS59
|
4.8
|
15.7
|
1.0
|
CB
|
A:MET203
|
4.9
|
15.6
|
1.0
|
CA
|
A:ASN53
|
4.9
|
14.0
|
1.0
|
N
|
A:MET56
|
5.0
|
15.6
|
1.0
|
O
|
A:ASN53
|
5.0
|
16.3
|
1.0
|
|
Iron binding site 5 out
of 40 in 6onc
Go back to
Iron Binding Sites List in 6onc
Iron binding site 5 out
of 40 in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe702
b:20.6
occ:1.00
|
FE1
|
A:XCC702
|
0.0
|
20.6
|
1.0
|
S4
|
A:XCC702
|
2.2
|
18.8
|
1.0
|
S3
|
A:XCC702
|
2.3
|
21.6
|
1.0
|
S2
|
A:XCC702
|
2.3
|
18.7
|
1.0
|
SG
|
A:CYS340
|
2.4
|
18.0
|
1.0
|
FE3
|
A:XCC702
|
2.6
|
20.2
|
1.0
|
FE4
|
A:XCC702
|
2.7
|
21.2
|
1.0
|
FE
|
A:FE703
|
2.8
|
25.5
|
0.2
|
FE2
|
A:XCC702
|
3.3
|
20.7
|
0.8
|
CB
|
A:CYS340
|
3.3
|
14.7
|
1.0
|
S1
|
A:XCC702
|
3.8
|
17.6
|
1.0
|
O
|
A:HOH948
|
3.8
|
19.8
|
0.8
|
NZ
|
A:LYS556
|
4.1
|
17.4
|
1.0
|
CE2
|
A:TYR553
|
4.1
|
19.6
|
1.0
|
NE2
|
A:HIS266
|
4.3
|
18.9
|
1.0
|
CE1
|
A:HIS266
|
4.5
|
17.8
|
1.0
|
OH
|
A:TYR553
|
4.7
|
25.1
|
1.0
|
CE
|
A:LYS556
|
4.7
|
18.1
|
1.0
|
SG
|
A:CYS448
|
4.7
|
18.9
|
1.0
|
CA
|
A:CYS340
|
4.8
|
15.9
|
1.0
|
OG
|
A:SER554
|
4.8
|
16.6
|
1.0
|
CZ
|
A:TYR553
|
4.9
|
20.8
|
1.0
|
SG
|
A:CYS478
|
5.0
|
18.2
|
1.0
|
CB
|
A:SER554
|
5.0
|
15.7
|
1.0
|
|
Iron binding site 6 out
of 40 in 6onc
Go back to
Iron Binding Sites List in 6onc
Iron binding site 6 out
of 40 in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe702
b:20.7
occ:0.80
|
FE2
|
A:XCC702
|
0.0
|
20.7
|
0.8
|
O
|
A:HOH948
|
1.9
|
19.8
|
0.8
|
FE
|
A:FE703
|
2.1
|
25.5
|
0.2
|
NE2
|
A:HIS266
|
2.2
|
18.9
|
1.0
|
S3
|
A:XCC702
|
2.3
|
21.6
|
1.0
|
SG
|
A:CYS302
|
2.3
|
17.7
|
1.0
|
CD2
|
A:HIS266
|
3.1
|
17.3
|
1.0
|
CE1
|
A:HIS266
|
3.2
|
17.8
|
1.0
|
CB
|
A:CYS302
|
3.3
|
19.8
|
1.0
|
FE1
|
A:XCC702
|
3.3
|
20.6
|
1.0
|
SG
|
A:CYS519
|
3.6
|
21.1
|
0.2
|
SG
|
A:CYS519
|
3.6
|
19.5
|
0.8
|
NZ
|
A:LYS556
|
3.7
|
17.4
|
1.0
|
S4
|
A:XCC702
|
3.7
|
18.8
|
1.0
|
FE4
|
A:XCC702
|
3.9
|
21.2
|
1.0
|
O
|
A:HOH992
|
3.9
|
16.1
|
0.8
|
CB
|
A:CYS519
|
4.0
|
14.7
|
0.8
|
CB
|
A:CYS519
|
4.0
|
16.8
|
0.2
|
S1
|
A:XCC702
|
4.2
|
17.6
|
1.0
|
CG
|
A:HIS266
|
4.2
|
15.3
|
1.0
|
N
|
A:CYS302
|
4.3
|
15.4
|
1.0
|
ND1
|
A:HIS266
|
4.3
|
16.2
|
1.0
|
CA
|
A:CYS302
|
4.3
|
19.1
|
1.0
|
O
|
A:HOH1031
|
4.5
|
20.8
|
1.0
|
O
|
A:HOH1108
|
4.5
|
18.4
|
1.0
|
SG
|
A:CYS340
|
4.6
|
18.0
|
1.0
|
FE3
|
A:XCC702
|
4.6
|
20.2
|
1.0
|
CE
|
A:LYS556
|
4.9
|
18.1
|
1.0
|
N
|
A:CYS519
|
5.0
|
14.0
|
0.8
|
N
|
A:CYS519
|
5.0
|
14.5
|
0.2
|
|
Iron binding site 7 out
of 40 in 6onc
Go back to
Iron Binding Sites List in 6onc
Iron binding site 7 out
of 40 in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe702
b:20.2
occ:1.00
|
FE3
|
A:XCC702
|
0.0
|
20.2
|
1.0
|
S4
|
A:XCC702
|
2.2
|
18.8
|
1.0
|
S1
|
A:XCC702
|
2.2
|
17.6
|
1.0
|
S2
|
A:XCC702
|
2.3
|
18.7
|
1.0
|
SG
|
A:CYS448
|
2.5
|
18.9
|
1.0
|
FE1
|
A:XCC702
|
2.6
|
20.6
|
1.0
|
FE4
|
A:XCC702
|
2.7
|
21.2
|
1.0
|
FE
|
A:FE703
|
2.8
|
25.5
|
0.2
|
CB
|
A:CYS448
|
3.3
|
18.0
|
1.0
|
CA
|
A:CYS448
|
3.7
|
16.4
|
1.0
|
S3
|
A:XCC702
|
3.9
|
21.6
|
1.0
|
N
|
A:CYS448
|
4.0
|
19.2
|
1.0
|
OG
|
A:SER554
|
4.0
|
16.6
|
1.0
|
C
|
A:GLY447
|
4.2
|
20.2
|
1.0
|
CE2
|
A:TYR553
|
4.3
|
19.6
|
1.0
|
CA
|
A:GLY447
|
4.5
|
18.5
|
1.0
|
CD2
|
A:TYR553
|
4.5
|
18.5
|
1.0
|
SG
|
A:CYS519
|
4.6
|
19.5
|
0.8
|
FE2
|
A:XCC702
|
4.6
|
20.7
|
0.8
|
O
|
A:HOH948
|
4.6
|
19.8
|
0.8
|
CB
|
A:SER554
|
4.7
|
15.7
|
1.0
|
O
|
A:GLY447
|
4.7
|
17.2
|
1.0
|
SG
|
A:CYS340
|
4.7
|
18.0
|
1.0
|
SG
|
A:CYS478
|
4.8
|
18.2
|
1.0
|
|
Iron binding site 8 out
of 40 in 6onc
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Iron Binding Sites List in 6onc
Iron binding site 8 out
of 40 in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe702
b:21.2
occ:1.00
|
FE4
|
A:XCC702
|
0.0
|
21.2
|
1.0
|
S2
|
A:XCC702
|
2.2
|
18.7
|
1.0
|
S1
|
A:XCC702
|
2.3
|
17.6
|
1.0
|
S3
|
A:XCC702
|
2.3
|
21.6
|
1.0
|
SG
|
A:CYS478
|
2.4
|
18.2
|
1.0
|
FE3
|
A:XCC702
|
2.7
|
20.2
|
1.0
|
FE1
|
A:XCC702
|
2.7
|
20.6
|
1.0
|
FE
|
A:FE703
|
2.8
|
25.5
|
0.2
|
CB
|
A:CYS478
|
3.4
|
18.9
|
1.0
|
O
|
A:HOH1031
|
3.8
|
20.8
|
1.0
|
FE2
|
A:XCC702
|
3.9
|
20.7
|
0.8
|
S4
|
A:XCC702
|
3.9
|
18.8
|
1.0
|
N
|
A:CYS478
|
4.0
|
14.9
|
1.0
|
CA
|
A:CYS478
|
4.3
|
16.9
|
1.0
|
CA
|
A:CYS448
|
4.5
|
16.4
|
1.0
|
CB
|
A:HIS319
|
4.5
|
14.7
|
1.0
|
SG
|
A:CYS301
|
4.6
|
20.7
|
1.0
|
CB
|
A:CYS448
|
4.7
|
18.0
|
1.0
|
SG
|
A:CYS448
|
4.8
|
18.9
|
1.0
|
O
|
A:GLY447
|
4.8
|
17.2
|
1.0
|
CB
|
A:CYS301
|
4.9
|
14.8
|
1.0
|
SG
|
A:CYS519
|
4.9
|
19.5
|
0.8
|
SG
|
A:CYS302
|
4.9
|
17.7
|
1.0
|
C
|
A:GLY447
|
5.0
|
20.2
|
1.0
|
C
|
A:GLY477
|
5.0
|
16.0
|
1.0
|
|
Iron binding site 9 out
of 40 in 6onc
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Iron Binding Sites List in 6onc
Iron binding site 9 out
of 40 in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe703
b:25.5
occ:0.20
|
FE2
|
A:XCC702
|
2.1
|
20.7
|
0.8
|
S1
|
A:XCC702
|
2.3
|
17.6
|
1.0
|
O
|
A:HOH948
|
2.5
|
19.8
|
0.8
|
SG
|
A:CYS519
|
2.5
|
19.5
|
0.8
|
S4
|
A:XCC702
|
2.6
|
18.8
|
1.0
|
S3
|
A:XCC702
|
2.6
|
21.6
|
1.0
|
FE3
|
A:XCC702
|
2.8
|
20.2
|
1.0
|
FE4
|
A:XCC702
|
2.8
|
21.2
|
1.0
|
FE1
|
A:XCC702
|
2.8
|
20.6
|
1.0
|
SG
|
A:CYS302
|
3.4
|
17.7
|
1.0
|
CB
|
A:CYS519
|
3.8
|
16.8
|
0.2
|
CB
|
A:CYS519
|
3.8
|
14.7
|
0.8
|
S2
|
A:XCC702
|
4.0
|
18.7
|
1.0
|
SG
|
A:CYS519
|
4.1
|
21.1
|
0.2
|
NE2
|
A:HIS266
|
4.1
|
18.9
|
1.0
|
O
|
A:HOH1031
|
4.5
|
20.8
|
1.0
|
NZ
|
A:LYS556
|
4.6
|
17.4
|
1.0
|
SG
|
A:CYS340
|
4.9
|
18.0
|
1.0
|
CA
|
A:GLY477
|
4.9
|
17.6
|
1.0
|
O
|
A:HOH992
|
4.9
|
16.1
|
0.8
|
SG
|
A:CYS478
|
4.9
|
18.2
|
1.0
|
CB
|
A:CYS302
|
4.9
|
19.8
|
1.0
|
N
|
A:CYS478
|
5.0
|
14.9
|
1.0
|
|
Iron binding site 10 out
of 40 in 6onc
Go back to
Iron Binding Sites List in 6onc
Iron binding site 10 out
of 40 in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase Produced Without Cooc, As-Isolated within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe701
b:18.1
occ:1.00
|
FE1
|
B:FES701
|
0.0
|
18.1
|
1.0
|
S1
|
B:FES701
|
2.2
|
18.2
|
1.0
|
S2
|
B:FES701
|
2.2
|
18.2
|
1.0
|
SG
|
B:CYS42
|
2.3
|
19.2
|
1.0
|
SG
|
B:CYS45
|
2.3
|
18.2
|
1.0
|
FE2
|
B:FES701
|
2.8
|
18.6
|
1.0
|
CB
|
B:CYS42
|
3.2
|
17.9
|
1.0
|
CB
|
B:CYS45
|
3.5
|
16.1
|
1.0
|
N
|
B:CYS45
|
3.8
|
17.8
|
1.0
|
CA
|
B:CYS45
|
4.1
|
16.8
|
1.0
|
O
|
A:HOH1125
|
4.2
|
18.0
|
1.0
|
C1
|
A:GOL704
|
4.4
|
28.8
|
1.0
|
SG
|
A:CYS45
|
4.4
|
18.9
|
1.0
|
OG1
|
A:THR50
|
4.5
|
19.2
|
1.0
|
C3
|
A:GOL704
|
4.5
|
29.7
|
1.0
|
SG
|
A:CYS42
|
4.5
|
19.4
|
1.0
|
CA
|
B:CYS42
|
4.6
|
19.8
|
1.0
|
CB
|
B:PHE44
|
4.7
|
18.0
|
1.0
|
CG2
|
B:THR50
|
4.7
|
19.8
|
1.0
|
OG1
|
B:THR50
|
4.7
|
20.4
|
1.0
|
C
|
B:PHE44
|
4.8
|
18.7
|
1.0
|
CB
|
B:THR50
|
4.9
|
18.3
|
1.0
|
|
Reference:
E.C.Wittenborn,
S.E.Cohen,
M.Merrouch,
C.Leger,
V.Fourmond,
S.Dementin,
C.L.Drennan.
Structural Insight Into Metallocofactor Maturation in Carbon Monoxide Dehydrogenase. J.Biol.Chem. V. 294 13017 2019.
ISSN: ESSN 1083-351X
PubMed: 31296570
DOI: 10.1074/JBC.RA119.009610
Page generated: Wed Aug 7 04:36:57 2024
|