Atomistry » Iron » PDB 6op2-6pn0 » 6ovh
Atomistry »
  Iron »
    PDB 6op2-6pn0 »
      6ovh »

Iron in PDB 6ovh: Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562

Other elements in 6ovh:

The structure of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 also contains other interesting chemical elements:

Zinc (Zn) 24 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 (pdb code 6ovh). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 20 binding sites of Iron where determined in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562, PDB code: 6ovh:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 20 in 6ovh

Go back to Iron Binding Sites List in 6ovh
Iron binding site 1 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:49.4
occ:1.00
 FE A:HEC201 0.0 49.4 1.0
NA A:HEC201 2.0 49.4 1.0
ND A:HEC201 2.1 49.4 1.0
NC A:HEC201 2.1 49.4 1.0
NB A:HEC201 2.1 49.4 1.0
NE2 A:HIS102 2.8 51.9 1.0
C4B A:HEC201 3.0 49.4 1.0
C1A A:HEC201 3.0 49.4 1.0
C4D A:HEC201 3.0 49.4 1.0
C1C A:HEC201 3.0 49.4 1.0
C1B A:HEC201 3.1 49.4 1.0
SD A:MET7 3.1 39.7 1.0
C1D A:HEC201 3.1 49.4 1.0
C4A A:HEC201 3.1 49.4 1.0
C4C A:HEC201 3.1 49.4 1.0
CHC A:HEC201 3.3 49.4 1.0
CHA A:HEC201 3.4 49.4 1.0
CHB A:HEC201 3.5 49.4 1.0
CHD A:HEC201 3.5 49.4 1.0
CG A:MET7 3.5 39.7 1.0
CE A:MET7 3.5 39.7 1.0
CE1 A:HIS102 3.7 51.9 1.0
CD2 A:HIS102 3.7 51.9 1.0
C3B A:HEC201 4.2 49.4 1.0
C2B A:HEC201 4.2 49.4 1.0
C3D A:HEC201 4.2 49.4 1.0
C2A A:HEC201 4.3 49.4 1.0
C2D A:HEC201 4.3 49.4 1.0
C3A A:HEC201 4.3 49.4 1.0
C2C A:HEC201 4.3 49.4 1.0
CB A:MET7 4.3 39.7 1.0
C3C A:HEC201 4.3 49.4 1.0
ND1 A:HIS102 4.8 51.9 1.0
CG A:HIS102 4.9 51.9 1.0

Iron binding site 2 out of 20 in 6ovh

Go back to Iron Binding Sites List in 6ovh
Iron binding site 2 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe207

b:0.8
occ:1.00
 O F:HAE203 2.0 96.6 1.0
O G:HAE203 2.0 97.2 1.0
O A:HAE203 2.0 96.4 1.0
O2 G:HAE203 2.0 97.2 1.0
O2 A:HAE203 2.0 96.4 1.0
O2 F:HAE203 2.0 96.6 1.0
N G:HAE203 2.2 97.2 1.0
N F:HAE203 2.2 96.6 1.0
N A:HAE203 2.2 96.4 1.0
C2 G:HAE203 2.2 97.2 1.0
C2 F:HAE203 2.2 96.6 1.0
C2 A:HAE203 2.2 96.4 1.0
C1 G:HAE203 3.5 97.2 1.0
C1 F:HAE203 3.6 96.6 1.0
C1 A:HAE203 3.6 96.4 1.0
SG G:CYS82 4.3 67.8 1.0
SG F:CYS82 4.3 67.4 1.0
SG A:CYS82 4.4 68.0 1.0

Iron binding site 3 out of 20 in 6ovh

Go back to Iron Binding Sites List in 6ovh
Iron binding site 3 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:50.2
occ:1.00
 FE B:HEC201 0.0 50.2 1.0
NA B:HEC201 2.0 50.2 1.0
ND B:HEC201 2.1 50.2 1.0
NC B:HEC201 2.1 50.2 1.0
NB B:HEC201 2.1 50.2 1.0
NE2 B:HIS102 2.8 52.8 1.0
C4B B:HEC201 3.0 50.2 1.0
C1A B:HEC201 3.0 50.2 1.0
C4D B:HEC201 3.0 50.2 1.0
C1C B:HEC201 3.0 50.2 1.0
C1B B:HEC201 3.1 50.2 1.0
SD B:MET7 3.1 39.8 1.0
C1D B:HEC201 3.1 50.2 1.0
C4A B:HEC201 3.1 50.2 1.0
C4C B:HEC201 3.1 50.2 1.0
CHC B:HEC201 3.3 50.2 1.0
CHA B:HEC201 3.4 50.2 1.0
CHB B:HEC201 3.5 50.2 1.0
CHD B:HEC201 3.5 50.2 1.0
CG B:MET7 3.5 39.8 1.0
CE B:MET7 3.5 39.8 1.0
CE1 B:HIS102 3.7 52.8 1.0
CD2 B:HIS102 3.7 52.8 1.0
C3B B:HEC201 4.2 50.2 1.0
C2B B:HEC201 4.2 50.2 1.0
C3D B:HEC201 4.2 50.2 1.0
C2A B:HEC201 4.3 50.2 1.0
C2D B:HEC201 4.3 50.2 1.0
C3A B:HEC201 4.3 50.2 1.0
C2C B:HEC201 4.3 50.2 1.0
CB B:MET7 4.3 39.8 1.0
C3C B:HEC201 4.3 50.2 1.0
ND1 B:HIS102 4.8 52.8 1.0
CG B:HIS102 4.9 52.8 1.0

Iron binding site 4 out of 20 in 6ovh

Go back to Iron Binding Sites List in 6ovh
Iron binding site 4 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe204

b:0.9
occ:1.00
 O J:HAE203 1.9 0.6 1.0
O2 F:HAE202 2.0 0.0 1.0
O F:HAE202 2.0 0.0 1.0
O B:HAE202 2.0 99.7 1.0
O2 J:HAE203 2.1 0.6 1.0
O2 B:HAE202 2.2 99.7 1.0
C2 F:HAE202 2.7 0.0 1.0
N J:HAE203 2.7 0.6 1.0
N F:HAE202 2.7 0.0 1.0
C2 J:HAE203 2.7 0.6 1.0
N B:HAE202 2.9 99.7 1.0
C2 B:HAE202 2.9 99.7 1.0
O J:HOH310 3.0 97.1 1.0
C1 F:HAE202 4.2 0.0 1.0
C1 J:HAE203 4.2 0.6 1.0
C1 B:HAE202 4.4 99.7 1.0

Iron binding site 5 out of 20 in 6ovh

Go back to Iron Binding Sites List in 6ovh
Iron binding site 5 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe205

b:0.1
occ:1.00
 O C:HAE204 1.9 93.1 1.0
O I:HAE203 1.9 94.8 1.0
O B:HAE203 2.1 94.5 1.0
O2 B:HAE203 2.1 94.5 1.0
O2 I:HAE203 2.1 94.8 1.0
O2 C:HAE204 2.1 93.1 1.0
N I:HAE203 2.2 94.8 1.0
N C:HAE204 2.2 93.1 1.0
N B:HAE203 2.2 94.5 1.0
C2 I:HAE203 2.2 94.8 1.0
C2 B:HAE203 2.3 94.5 1.0
C2 C:HAE204 2.3 93.1 1.0
C1 B:HAE203 3.6 94.5 1.0
C1 I:HAE203 3.6 94.8 1.0
C1 C:HAE204 3.6 93.1 1.0
SG B:CYS82 4.3 66.9 1.0
SG I:CYS82 4.3 68.5 1.0
SG C:CYS82 4.4 66.3 1.0

Iron binding site 6 out of 20 in 6ovh

Go back to Iron Binding Sites List in 6ovh
Iron binding site 6 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:0.1
occ:1.00
 O C:HAE203 1.9 0.0 1.0
O D:HAE202 1.9 98.1 1.0
O A:HAE202 2.0 98.4 1.0
O2 C:HAE203 2.0 0.0 1.0
O2 A:HAE202 2.1 98.4 1.0
O2 D:HAE202 2.2 98.1 1.0
N C:HAE203 2.7 0.0 1.0
C2 C:HAE203 2.7 0.0 1.0
C2 A:HAE202 2.8 98.4 1.0
N A:HAE202 2.8 98.4 1.0
N D:HAE202 2.8 98.1 1.0
C2 D:HAE202 2.9 98.1 1.0
O C:HOH308 3.0 91.6 1.0
C1 C:HAE203 4.2 0.0 1.0
C1 A:HAE202 4.3 98.4 1.0
C1 D:HAE202 4.4 98.1 1.0

Iron binding site 7 out of 20 in 6ovh

Go back to Iron Binding Sites List in 6ovh
Iron binding site 7 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe202

b:49.4
occ:1.00
 FE C:HEC202 0.0 49.4 1.0
NA C:HEC202 2.0 49.4 1.0
ND C:HEC202 2.0 49.4 1.0
NC C:HEC202 2.1 49.4 1.0
NB C:HEC202 2.1 49.4 1.0
NE2 C:HIS102 2.8 51.8 1.0
C4B C:HEC202 3.0 49.4 1.0
C1A C:HEC202 3.0 49.4 1.0
C4D C:HEC202 3.0 49.4 1.0
C1C C:HEC202 3.0 49.4 1.0
C1B C:HEC202 3.1 49.4 1.0
SD C:MET7 3.1 41.5 1.0
C1D C:HEC202 3.1 49.4 1.0
C4A C:HEC202 3.1 49.4 1.0
C4C C:HEC202 3.1 49.4 1.0
CHC C:HEC202 3.3 49.4 1.0
CHA C:HEC202 3.4 49.4 1.0
CHB C:HEC202 3.5 49.4 1.0
CHD C:HEC202 3.5 49.4 1.0
CG C:MET7 3.5 41.5 1.0
CE C:MET7 3.5 41.5 1.0
CE1 C:HIS102 3.7 51.8 1.0
CD2 C:HIS102 3.7 51.8 1.0
C3B C:HEC202 4.2 49.4 1.0
C2B C:HEC202 4.2 49.4 1.0
C3D C:HEC202 4.2 49.4 1.0
C2A C:HEC202 4.3 49.4 1.0
C2D C:HEC202 4.3 49.4 1.0
C3A C:HEC202 4.3 49.4 1.0
C2C C:HEC202 4.3 49.4 1.0
CB C:MET7 4.3 41.5 1.0
C3C C:HEC202 4.3 49.4 1.0
ND1 C:HIS102 4.8 51.8 1.0
CG C:HIS102 4.9 51.8 1.0

Iron binding site 8 out of 20 in 6ovh

Go back to Iron Binding Sites List in 6ovh
Iron binding site 8 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:50.2
occ:1.00
 FE D:HEC201 0.0 50.2 1.0
NA D:HEC201 2.0 50.2 1.0
ND D:HEC201 2.0 50.2 1.0
NC D:HEC201 2.1 50.2 1.0
NB D:HEC201 2.1 50.2 1.0
NE2 D:HIS102 2.8 53.4 1.0
C4B D:HEC201 3.0 50.2 1.0
C1A D:HEC201 3.0 50.2 1.0
C4D D:HEC201 3.0 50.2 1.0
C1C D:HEC201 3.0 50.2 1.0
C1B D:HEC201 3.1 50.2 1.0
SD D:MET7 3.1 40.9 1.0
C1D D:HEC201 3.1 50.2 1.0
C4A D:HEC201 3.1 50.2 1.0
C4C D:HEC201 3.1 50.2 1.0
CHC D:HEC201 3.3 50.2 1.0
CHA D:HEC201 3.4 50.2 1.0
CHB D:HEC201 3.5 50.2 1.0
CHD D:HEC201 3.5 50.2 1.0
CG D:MET7 3.5 40.9 1.0
CE D:MET7 3.5 40.9 1.0
CE1 D:HIS102 3.7 53.4 1.0
CD2 D:HIS102 3.7 53.4 1.0
C3B D:HEC201 4.2 50.2 1.0
C2B D:HEC201 4.2 50.2 1.0
C3D D:HEC201 4.2 50.2 1.0
C2A D:HEC201 4.3 50.2 1.0
C2D D:HEC201 4.3 50.2 1.0
C3A D:HEC201 4.3 50.2 1.0
C2C D:HEC201 4.3 50.2 1.0
CB D:MET7 4.3 40.9 1.0
C3C D:HEC201 4.3 50.2 1.0
ND1 D:HIS102 4.8 53.4 1.0
CG D:HIS102 4.9 53.4 1.0

Iron binding site 9 out of 20 in 6ovh

Go back to Iron Binding Sites List in 6ovh
Iron binding site 9 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe204

b:1.0
occ:1.00
 O L:HAE204 1.9 94.6 1.0
O H:HAE204 2.0 94.5 1.0
O D:HAE203 2.0 94.3 1.0
O2 D:HAE203 2.0 94.3 1.0
O2 L:HAE204 2.1 94.6 1.0
O2 H:HAE204 2.1 94.5 1.0
N L:HAE204 2.1 94.6 1.0
N D:HAE203 2.2 94.3 1.0
N H:HAE204 2.2 94.5 1.0
C2 D:HAE203 2.2 94.3 1.0
C2 L:HAE204 2.2 94.6 1.0
C2 H:HAE204 2.2 94.5 1.0
C1 D:HAE203 3.5 94.3 1.0
C1 L:HAE204 3.5 94.6 1.0
C1 H:HAE204 3.6 94.5 1.0
SG D:CYS82 4.3 66.3 1.0
SG L:CYS82 4.3 66.7 1.0
SG H:CYS82 4.3 67.0 1.0

Iron binding site 10 out of 20 in 6ovh

Go back to Iron Binding Sites List in 6ovh
Iron binding site 10 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:49.4
occ:1.00
 FE E:HEC201 0.0 49.4 1.0
NA E:HEC201 2.0 49.4 1.0
ND E:HEC201 2.0 49.4 1.0
NC E:HEC201 2.1 49.4 1.0
NB E:HEC201 2.1 49.4 1.0
NE2 E:HIS102 2.8 52.8 1.0
C4B E:HEC201 3.0 49.4 1.0
C1A E:HEC201 3.0 49.4 1.0
C4D E:HEC201 3.0 49.4 1.0
C1C E:HEC201 3.0 49.4 1.0
C1B E:HEC201 3.1 49.4 1.0
SD E:MET7 3.1 39.6 1.0
C1D E:HEC201 3.1 49.4 1.0
C4A E:HEC201 3.1 49.4 1.0
C4C E:HEC201 3.1 49.4 1.0
CHC E:HEC201 3.3 49.4 1.0
CHA E:HEC201 3.4 49.4 1.0
CHB E:HEC201 3.5 49.4 1.0
CHD E:HEC201 3.5 49.4 1.0
CG E:MET7 3.5 39.6 1.0
CE E:MET7 3.5 39.6 1.0
CE1 E:HIS102 3.7 52.8 1.0
CD2 E:HIS102 3.7 52.8 1.0
C3B E:HEC201 4.2 49.4 1.0
C2B E:HEC201 4.2 49.4 1.0
C3D E:HEC201 4.2 49.4 1.0
C2A E:HEC201 4.3 49.4 1.0
C2D E:HEC201 4.3 49.4 1.0
C3A E:HEC201 4.3 49.4 1.0
C2C E:HEC201 4.3 49.4 1.0
CB E:MET7 4.3 39.6 1.0
C3C E:HEC201 4.3 49.4 1.0
ND1 E:HIS102 4.8 52.8 1.0
CG E:HIS102 4.9 52.8 1.0

Reference:

E.Golub, R.H.Subramanian, J.Esselborn, R.G.Alberstein, J.B.Bailey, J.A.Chiong, X.Yan, T.Booth, T.S.Baker, F.A.Tezcan. Constructing Protein Polyhedra Via Orthogonal Chemical Interactions Nature 2020.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-019-1928-2
Page generated: Wed Aug 7 05:28:31 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy