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Iron in PDB 6ovh: Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562

Other elements in 6ovh:

The structure of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 also contains other interesting chemical elements:

Zinc (Zn) 24 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 (pdb code 6ovh). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 20 binding sites of Iron where determined in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562, PDB code: 6ovh:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 20 in 6ovh

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Iron binding site 1 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:49.4
occ:1.00
 FE A:HEC201 0.0 49.4 1.0
NA A:HEC201 2.0 49.4 1.0
ND A:HEC201 2.1 49.4 1.0
NC A:HEC201 2.1 49.4 1.0
NB A:HEC201 2.1 49.4 1.0
NE2 A:HIS102 2.8 51.9 1.0
C4B A:HEC201 3.0 49.4 1.0
C1A A:HEC201 3.0 49.4 1.0
C4D A:HEC201 3.0 49.4 1.0
C1C A:HEC201 3.0 49.4 1.0
C1B A:HEC201 3.1 49.4 1.0
SD A:MET7 3.1 39.7 1.0
C1D A:HEC201 3.1 49.4 1.0
C4A A:HEC201 3.1 49.4 1.0
C4C A:HEC201 3.1 49.4 1.0
CHC A:HEC201 3.3 49.4 1.0
CHA A:HEC201 3.4 49.4 1.0
CHB A:HEC201 3.5 49.4 1.0
CHD A:HEC201 3.5 49.4 1.0
CG A:MET7 3.5 39.7 1.0
CE A:MET7 3.5 39.7 1.0
CE1 A:HIS102 3.7 51.9 1.0
CD2 A:HIS102 3.7 51.9 1.0
C3B A:HEC201 4.2 49.4 1.0
C2B A:HEC201 4.2 49.4 1.0
C3D A:HEC201 4.2 49.4 1.0
C2A A:HEC201 4.3 49.4 1.0
C2D A:HEC201 4.3 49.4 1.0
C3A A:HEC201 4.3 49.4 1.0
C2C A:HEC201 4.3 49.4 1.0
CB A:MET7 4.3 39.7 1.0
C3C A:HEC201 4.3 49.4 1.0
ND1 A:HIS102 4.8 51.9 1.0
CG A:HIS102 4.9 51.9 1.0

Iron binding site 2 out of 20 in 6ovh

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Iron binding site 2 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe207

b:0.8
occ:1.00
 O F:HAE203 2.0 96.6 1.0
O G:HAE203 2.0 97.2 1.0
O A:HAE203 2.0 96.4 1.0
O2 G:HAE203 2.0 97.2 1.0
O2 A:HAE203 2.0 96.4 1.0
O2 F:HAE203 2.0 96.6 1.0
N G:HAE203 2.2 97.2 1.0
N F:HAE203 2.2 96.6 1.0
N A:HAE203 2.2 96.4 1.0
C2 G:HAE203 2.2 97.2 1.0
C2 F:HAE203 2.2 96.6 1.0
C2 A:HAE203 2.2 96.4 1.0
C1 G:HAE203 3.5 97.2 1.0
C1 F:HAE203 3.6 96.6 1.0
C1 A:HAE203 3.6 96.4 1.0
SG G:CYS82 4.3 67.8 1.0
SG F:CYS82 4.3 67.4 1.0
SG A:CYS82 4.4 68.0 1.0

Iron binding site 3 out of 20 in 6ovh

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Iron binding site 3 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:50.2
occ:1.00
 FE B:HEC201 0.0 50.2 1.0
NA B:HEC201 2.0 50.2 1.0
ND B:HEC201 2.1 50.2 1.0
NC B:HEC201 2.1 50.2 1.0
NB B:HEC201 2.1 50.2 1.0
NE2 B:HIS102 2.8 52.8 1.0
C4B B:HEC201 3.0 50.2 1.0
C1A B:HEC201 3.0 50.2 1.0
C4D B:HEC201 3.0 50.2 1.0
C1C B:HEC201 3.0 50.2 1.0
C1B B:HEC201 3.1 50.2 1.0
SD B:MET7 3.1 39.8 1.0
C1D B:HEC201 3.1 50.2 1.0
C4A B:HEC201 3.1 50.2 1.0
C4C B:HEC201 3.1 50.2 1.0
CHC B:HEC201 3.3 50.2 1.0
CHA B:HEC201 3.4 50.2 1.0
CHB B:HEC201 3.5 50.2 1.0
CHD B:HEC201 3.5 50.2 1.0
CG B:MET7 3.5 39.8 1.0
CE B:MET7 3.5 39.8 1.0
CE1 B:HIS102 3.7 52.8 1.0
CD2 B:HIS102 3.7 52.8 1.0
C3B B:HEC201 4.2 50.2 1.0
C2B B:HEC201 4.2 50.2 1.0
C3D B:HEC201 4.2 50.2 1.0
C2A B:HEC201 4.3 50.2 1.0
C2D B:HEC201 4.3 50.2 1.0
C3A B:HEC201 4.3 50.2 1.0
C2C B:HEC201 4.3 50.2 1.0
CB B:MET7 4.3 39.8 1.0
C3C B:HEC201 4.3 50.2 1.0
ND1 B:HIS102 4.8 52.8 1.0
CG B:HIS102 4.9 52.8 1.0

Iron binding site 4 out of 20 in 6ovh

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Iron binding site 4 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe204

b:0.9
occ:1.00
 O J:HAE203 1.9 0.6 1.0
O2 F:HAE202 2.0 0.0 1.0
O F:HAE202 2.0 0.0 1.0
O B:HAE202 2.0 99.7 1.0
O2 J:HAE203 2.1 0.6 1.0
O2 B:HAE202 2.2 99.7 1.0
C2 F:HAE202 2.7 0.0 1.0
N J:HAE203 2.7 0.6 1.0
N F:HAE202 2.7 0.0 1.0
C2 J:HAE203 2.7 0.6 1.0
N B:HAE202 2.9 99.7 1.0
C2 B:HAE202 2.9 99.7 1.0
O J:HOH310 3.0 97.1 1.0
C1 F:HAE202 4.2 0.0 1.0
C1 J:HAE203 4.2 0.6 1.0
C1 B:HAE202 4.4 99.7 1.0

Iron binding site 5 out of 20 in 6ovh

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Iron binding site 5 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe205

b:0.1
occ:1.00
 O C:HAE204 1.9 93.1 1.0
O I:HAE203 1.9 94.8 1.0
O B:HAE203 2.1 94.5 1.0
O2 B:HAE203 2.1 94.5 1.0
O2 I:HAE203 2.1 94.8 1.0
O2 C:HAE204 2.1 93.1 1.0
N I:HAE203 2.2 94.8 1.0
N C:HAE204 2.2 93.1 1.0
N B:HAE203 2.2 94.5 1.0
C2 I:HAE203 2.2 94.8 1.0
C2 B:HAE203 2.3 94.5 1.0
C2 C:HAE204 2.3 93.1 1.0
C1 B:HAE203 3.6 94.5 1.0
C1 I:HAE203 3.6 94.8 1.0
C1 C:HAE204 3.6 93.1 1.0
SG B:CYS82 4.3 66.9 1.0
SG I:CYS82 4.3 68.5 1.0
SG C:CYS82 4.4 66.3 1.0

Iron binding site 6 out of 20 in 6ovh

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Iron binding site 6 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:0.1
occ:1.00
 O C:HAE203 1.9 0.0 1.0
O D:HAE202 1.9 98.1 1.0
O A:HAE202 2.0 98.4 1.0
O2 C:HAE203 2.0 0.0 1.0
O2 A:HAE202 2.1 98.4 1.0
O2 D:HAE202 2.2 98.1 1.0
N C:HAE203 2.7 0.0 1.0
C2 C:HAE203 2.7 0.0 1.0
C2 A:HAE202 2.8 98.4 1.0
N A:HAE202 2.8 98.4 1.0
N D:HAE202 2.8 98.1 1.0
C2 D:HAE202 2.9 98.1 1.0
O C:HOH308 3.0 91.6 1.0
C1 C:HAE203 4.2 0.0 1.0
C1 A:HAE202 4.3 98.4 1.0
C1 D:HAE202 4.4 98.1 1.0

Iron binding site 7 out of 20 in 6ovh

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Iron binding site 7 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe202

b:49.4
occ:1.00
 FE C:HEC202 0.0 49.4 1.0
NA C:HEC202 2.0 49.4 1.0
ND C:HEC202 2.0 49.4 1.0
NC C:HEC202 2.1 49.4 1.0
NB C:HEC202 2.1 49.4 1.0
NE2 C:HIS102 2.8 51.8 1.0
C4B C:HEC202 3.0 49.4 1.0
C1A C:HEC202 3.0 49.4 1.0
C4D C:HEC202 3.0 49.4 1.0
C1C C:HEC202 3.0 49.4 1.0
C1B C:HEC202 3.1 49.4 1.0
SD C:MET7 3.1 41.5 1.0
C1D C:HEC202 3.1 49.4 1.0
C4A C:HEC202 3.1 49.4 1.0
C4C C:HEC202 3.1 49.4 1.0
CHC C:HEC202 3.3 49.4 1.0
CHA C:HEC202 3.4 49.4 1.0
CHB C:HEC202 3.5 49.4 1.0
CHD C:HEC202 3.5 49.4 1.0
CG C:MET7 3.5 41.5 1.0
CE C:MET7 3.5 41.5 1.0
CE1 C:HIS102 3.7 51.8 1.0
CD2 C:HIS102 3.7 51.8 1.0
C3B C:HEC202 4.2 49.4 1.0
C2B C:HEC202 4.2 49.4 1.0
C3D C:HEC202 4.2 49.4 1.0
C2A C:HEC202 4.3 49.4 1.0
C2D C:HEC202 4.3 49.4 1.0
C3A C:HEC202 4.3 49.4 1.0
C2C C:HEC202 4.3 49.4 1.0
CB C:MET7 4.3 41.5 1.0
C3C C:HEC202 4.3 49.4 1.0
ND1 C:HIS102 4.8 51.8 1.0
CG C:HIS102 4.9 51.8 1.0

Iron binding site 8 out of 20 in 6ovh

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Iron binding site 8 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:50.2
occ:1.00
 FE D:HEC201 0.0 50.2 1.0
NA D:HEC201 2.0 50.2 1.0
ND D:HEC201 2.0 50.2 1.0
NC D:HEC201 2.1 50.2 1.0
NB D:HEC201 2.1 50.2 1.0
NE2 D:HIS102 2.8 53.4 1.0
C4B D:HEC201 3.0 50.2 1.0
C1A D:HEC201 3.0 50.2 1.0
C4D D:HEC201 3.0 50.2 1.0
C1C D:HEC201 3.0 50.2 1.0
C1B D:HEC201 3.1 50.2 1.0
SD D:MET7 3.1 40.9 1.0
C1D D:HEC201 3.1 50.2 1.0
C4A D:HEC201 3.1 50.2 1.0
C4C D:HEC201 3.1 50.2 1.0
CHC D:HEC201 3.3 50.2 1.0
CHA D:HEC201 3.4 50.2 1.0
CHB D:HEC201 3.5 50.2 1.0
CHD D:HEC201 3.5 50.2 1.0
CG D:MET7 3.5 40.9 1.0
CE D:MET7 3.5 40.9 1.0
CE1 D:HIS102 3.7 53.4 1.0
CD2 D:HIS102 3.7 53.4 1.0
C3B D:HEC201 4.2 50.2 1.0
C2B D:HEC201 4.2 50.2 1.0
C3D D:HEC201 4.2 50.2 1.0
C2A D:HEC201 4.3 50.2 1.0
C2D D:HEC201 4.3 50.2 1.0
C3A D:HEC201 4.3 50.2 1.0
C2C D:HEC201 4.3 50.2 1.0
CB D:MET7 4.3 40.9 1.0
C3C D:HEC201 4.3 50.2 1.0
ND1 D:HIS102 4.8 53.4 1.0
CG D:HIS102 4.9 53.4 1.0

Iron binding site 9 out of 20 in 6ovh

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Iron binding site 9 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe204

b:1.0
occ:1.00
 O L:HAE204 1.9 94.6 1.0
O H:HAE204 2.0 94.5 1.0
O D:HAE203 2.0 94.3 1.0
O2 D:HAE203 2.0 94.3 1.0
O2 L:HAE204 2.1 94.6 1.0
O2 H:HAE204 2.1 94.5 1.0
N L:HAE204 2.1 94.6 1.0
N D:HAE203 2.2 94.3 1.0
N H:HAE204 2.2 94.5 1.0
C2 D:HAE203 2.2 94.3 1.0
C2 L:HAE204 2.2 94.6 1.0
C2 H:HAE204 2.2 94.5 1.0
C1 D:HAE203 3.5 94.3 1.0
C1 L:HAE204 3.5 94.6 1.0
C1 H:HAE204 3.6 94.5 1.0
SG D:CYS82 4.3 66.3 1.0
SG L:CYS82 4.3 66.7 1.0
SG H:CYS82 4.3 67.0 1.0

Iron binding site 10 out of 20 in 6ovh

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Iron binding site 10 out of 20 in the Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of Bimetallic Dodecameric Cage Design 3 (BMC3) From Cytochrome CB562 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:49.4
occ:1.00
 FE E:HEC201 0.0 49.4 1.0
NA E:HEC201 2.0 49.4 1.0
ND E:HEC201 2.0 49.4 1.0
NC E:HEC201 2.1 49.4 1.0
NB E:HEC201 2.1 49.4 1.0
NE2 E:HIS102 2.8 52.8 1.0
C4B E:HEC201 3.0 49.4 1.0
C1A E:HEC201 3.0 49.4 1.0
C4D E:HEC201 3.0 49.4 1.0
C1C E:HEC201 3.0 49.4 1.0
C1B E:HEC201 3.1 49.4 1.0
SD E:MET7 3.1 39.6 1.0
C1D E:HEC201 3.1 49.4 1.0
C4A E:HEC201 3.1 49.4 1.0
C4C E:HEC201 3.1 49.4 1.0
CHC E:HEC201 3.3 49.4 1.0
CHA E:HEC201 3.4 49.4 1.0
CHB E:HEC201 3.5 49.4 1.0
CHD E:HEC201 3.5 49.4 1.0
CG E:MET7 3.5 39.6 1.0
CE E:MET7 3.5 39.6 1.0
CE1 E:HIS102 3.7 52.8 1.0
CD2 E:HIS102 3.7 52.8 1.0
C3B E:HEC201 4.2 49.4 1.0
C2B E:HEC201 4.2 49.4 1.0
C3D E:HEC201 4.2 49.4 1.0
C2A E:HEC201 4.3 49.4 1.0
C2D E:HEC201 4.3 49.4 1.0
C3A E:HEC201 4.3 49.4 1.0
C2C E:HEC201 4.3 49.4 1.0
CB E:MET7 4.3 39.6 1.0
C3C E:HEC201 4.3 49.4 1.0
ND1 E:HIS102 4.8 52.8 1.0
CG E:HIS102 4.9 52.8 1.0

Reference:

E.Golub, R.H.Subramanian, J.Esselborn, R.G.Alberstein, J.B.Bailey, J.A.Chiong, X.Yan, T.Booth, T.S.Baker, F.A.Tezcan. Constructing Protein Polyhedra Via Orthogonal Chemical Interactions Nature 2020.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-019-1928-2
Page generated: Wed Aug 7 05:28:31 2024

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