Iron in PDB 6pgk: Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A
Enzymatic activity of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A
All present enzymatic activity of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A:
1.97.1.12;
Protein crystallography data
The structure of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A, PDB code: 6pgk
was solved by
R.Fromme,
C.Gisriel,
P.Fromme,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.88 /
2.90
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
279.100,
164.600,
284.100,
90.00,
119.25,
90.00
|
R / Rfree (%)
|
29.8 /
33.6
|
Other elements in 6pgk:
The structure of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
36;
Binding sites:
The binding sites of Iron atom in the Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A
(pdb code 6pgk). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 36 binding sites of Iron where determined in the
Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A, PDB code: 6pgk:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 36 in 6pgk
Go back to
Iron Binding Sites List in 6pgk
Iron binding site 1 out
of 36 in the Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe844
b:50.2
occ:1.00
|
FE1
|
A:SF4844
|
0.0
|
50.2
|
1.0
|
S3
|
A:SF4844
|
2.3
|
49.7
|
1.0
|
S4
|
A:SF4844
|
2.3
|
49.3
|
1.0
|
S2
|
A:SF4844
|
2.3
|
55.9
|
1.0
|
FE2
|
A:SF4844
|
2.7
|
52.0
|
1.0
|
FE4
|
A:SF4844
|
2.7
|
49.2
|
1.0
|
FE3
|
A:SF4844
|
2.7
|
55.4
|
1.0
|
SG
|
B:CYS574
|
2.9
|
60.3
|
1.0
|
CB
|
B:CYS574
|
3.0
|
52.4
|
1.0
|
CZ3
|
B:TRP673
|
3.7
|
51.1
|
1.0
|
CA
|
B:CYS574
|
3.8
|
51.2
|
1.0
|
S1
|
A:SF4844
|
3.9
|
50.1
|
1.0
|
N
|
B:CYS574
|
4.0
|
50.0
|
1.0
|
CG2
|
A:ILE724
|
4.2
|
47.4
|
1.0
|
CD1
|
A:ILE724
|
4.4
|
45.4
|
1.0
|
CE3
|
B:TRP673
|
4.4
|
52.2
|
1.0
|
CH2
|
B:TRP673
|
4.7
|
51.0
|
1.0
|
SG
|
B:CYS565
|
4.7
|
48.2
|
1.0
|
CB
|
B:CYS565
|
4.7
|
45.6
|
1.0
|
SG
|
A:CYS578
|
4.7
|
41.7
|
1.0
|
C
|
B:THR573
|
4.9
|
48.2
|
1.0
|
SG
|
A:CYS587
|
4.9
|
36.1
|
1.0
|
NH2
|
A:ARG728
|
5.0
|
57.9
|
1.0
|
|
Iron binding site 2 out
of 36 in 6pgk
Go back to
Iron Binding Sites List in 6pgk
Iron binding site 2 out
of 36 in the Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe844
b:52.0
occ:1.00
|
FE2
|
A:SF4844
|
0.0
|
52.0
|
1.0
|
S4
|
A:SF4844
|
2.3
|
49.3
|
1.0
|
SG
|
A:CYS587
|
2.3
|
36.1
|
1.0
|
S3
|
A:SF4844
|
2.3
|
49.7
|
1.0
|
S1
|
A:SF4844
|
2.3
|
50.1
|
1.0
|
FE1
|
A:SF4844
|
2.7
|
50.2
|
1.0
|
FE3
|
A:SF4844
|
2.7
|
55.4
|
1.0
|
FE4
|
A:SF4844
|
2.7
|
49.2
|
1.0
|
CB
|
A:CYS587
|
3.2
|
35.9
|
1.0
|
CE3
|
B:TRP673
|
3.6
|
52.2
|
1.0
|
CZ3
|
B:TRP673
|
3.8
|
51.1
|
1.0
|
S2
|
A:SF4844
|
3.9
|
55.9
|
1.0
|
CA
|
A:CYS587
|
4.0
|
35.9
|
1.0
|
CD1
|
B:ILE708
|
4.2
|
39.8
|
1.0
|
CB
|
A:CYS578
|
4.4
|
40.8
|
1.0
|
N
|
A:CYS587
|
4.5
|
34.7
|
1.0
|
SG
|
B:CYS565
|
4.7
|
48.2
|
1.0
|
SG
|
A:CYS578
|
4.7
|
41.7
|
1.0
|
NH2
|
A:ARG728
|
4.9
|
57.9
|
1.0
|
CD2
|
B:TRP673
|
4.9
|
50.9
|
1.0
|
CG1
|
B:ILE708
|
4.9
|
38.3
|
1.0
|
CG2
|
B:ILE708
|
4.9
|
37.4
|
1.0
|
|
Iron binding site 3 out
of 36 in 6pgk
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Iron Binding Sites List in 6pgk
Iron binding site 3 out
of 36 in the Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe844
b:55.4
occ:1.00
|
FE3
|
A:SF4844
|
0.0
|
55.4
|
1.0
|
SG
|
A:CYS578
|
2.2
|
41.7
|
1.0
|
S1
|
A:SF4844
|
2.3
|
50.1
|
1.0
|
S2
|
A:SF4844
|
2.3
|
55.9
|
1.0
|
S4
|
A:SF4844
|
2.3
|
49.3
|
1.0
|
CB
|
A:CYS578
|
2.7
|
40.8
|
1.0
|
FE4
|
A:SF4844
|
2.7
|
49.2
|
1.0
|
FE2
|
A:SF4844
|
2.7
|
52.0
|
1.0
|
FE1
|
A:SF4844
|
2.7
|
50.2
|
1.0
|
S3
|
A:SF4844
|
3.9
|
49.7
|
1.0
|
CA
|
A:CYS578
|
4.1
|
40.3
|
1.0
|
SG
|
A:CYS587
|
4.4
|
36.1
|
1.0
|
N
|
A:CYS578
|
4.5
|
39.4
|
1.0
|
CD1
|
A:ILE724
|
4.5
|
45.4
|
1.0
|
N
|
A:GLY580
|
4.6
|
40.3
|
1.0
|
CA
|
A:GLY580
|
4.6
|
39.7
|
1.0
|
SG
|
B:CYS565
|
4.7
|
48.2
|
1.0
|
CB
|
A:CYS587
|
4.8
|
35.9
|
1.0
|
CA
|
A:CYS587
|
4.8
|
35.9
|
1.0
|
CD
|
B:PRO568
|
4.9
|
50.5
|
1.0
|
C
|
A:PRO577
|
4.9
|
39.6
|
1.0
|
C
|
A:GLY580
|
4.9
|
40.0
|
1.0
|
C
|
A:CYS578
|
5.0
|
40.8
|
1.0
|
NH2
|
A:ARG728
|
5.0
|
57.9
|
1.0
|
|
Iron binding site 4 out
of 36 in 6pgk
Go back to
Iron Binding Sites List in 6pgk
Iron binding site 4 out
of 36 in the Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe844
b:49.2
occ:1.00
|
FE4
|
A:SF4844
|
0.0
|
49.2
|
1.0
|
SG
|
B:CYS565
|
2.2
|
48.2
|
1.0
|
S2
|
A:SF4844
|
2.3
|
55.9
|
1.0
|
S1
|
A:SF4844
|
2.3
|
50.1
|
1.0
|
S3
|
A:SF4844
|
2.3
|
49.7
|
1.0
|
FE3
|
A:SF4844
|
2.7
|
55.4
|
1.0
|
FE2
|
A:SF4844
|
2.7
|
52.0
|
1.0
|
FE1
|
A:SF4844
|
2.7
|
50.2
|
1.0
|
CB
|
B:CYS565
|
3.1
|
45.6
|
1.0
|
S4
|
A:SF4844
|
3.9
|
49.3
|
1.0
|
CD1
|
B:ILE708
|
4.4
|
39.8
|
1.0
|
CA
|
B:CYS565
|
4.5
|
43.9
|
1.0
|
SG
|
A:CYS578
|
4.5
|
41.7
|
1.0
|
SG
|
A:CYS587
|
4.6
|
36.1
|
1.0
|
N
|
B:GLY567
|
4.7
|
46.6
|
1.0
|
CA
|
B:GLY567
|
4.7
|
46.4
|
1.0
|
CB
|
B:CYS574
|
4.8
|
52.4
|
1.0
|
CA
|
B:CYS574
|
4.8
|
51.2
|
1.0
|
OG1
|
B:THR573
|
4.9
|
47.5
|
1.0
|
N
|
A:PRO581
|
4.9
|
42.7
|
1.0
|
N
|
B:CYS574
|
4.9
|
50.0
|
1.0
|
N
|
B:CYS565
|
4.9
|
43.2
|
1.0
|
CD
|
A:PRO581
|
5.0
|
42.6
|
1.0
|
C
|
A:GLY580
|
5.0
|
40.0
|
1.0
|
|
Iron binding site 5 out
of 36 in 6pgk
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Iron Binding Sites List in 6pgk
Iron binding site 5 out
of 36 in the Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe101
b:44.8
occ:1.00
|
FE1
|
C:SF4101
|
0.0
|
44.8
|
1.0
|
SG
|
C:CYS50
|
2.2
|
60.3
|
1.0
|
S3
|
C:SF4101
|
2.3
|
50.1
|
1.0
|
S4
|
C:SF4101
|
2.3
|
44.7
|
1.0
|
S2
|
C:SF4101
|
2.3
|
41.0
|
1.0
|
FE2
|
C:SF4101
|
2.7
|
51.3
|
1.0
|
FE4
|
C:SF4101
|
2.7
|
44.4
|
1.0
|
FE3
|
C:SF4101
|
2.7
|
43.5
|
1.0
|
N
|
C:CYS50
|
3.1
|
46.9
|
1.0
|
CB
|
C:CYS50
|
3.6
|
51.4
|
1.0
|
N
|
C:LYS51
|
3.6
|
43.1
|
1.0
|
CA
|
C:CYS50
|
3.7
|
47.6
|
1.0
|
O
|
C:HOH201
|
3.8
|
49.8
|
1.0
|
N
|
C:GLY49
|
3.9
|
53.8
|
1.0
|
S1
|
C:SF4101
|
3.9
|
49.4
|
1.0
|
C
|
C:GLY49
|
4.0
|
49.3
|
1.0
|
C
|
C:CYS50
|
4.1
|
44.7
|
1.0
|
CA
|
C:GLY49
|
4.1
|
51.4
|
1.0
|
CD
|
C:PRO21
|
4.2
|
54.3
|
1.0
|
N
|
C:ARG52
|
4.2
|
39.7
|
1.0
|
CA
|
C:LYS51
|
4.6
|
41.0
|
1.0
|
SG
|
C:CYS53
|
4.8
|
42.5
|
1.0
|
CB
|
C:ARG52
|
4.8
|
41.7
|
1.0
|
C
|
C:LYS51
|
4.9
|
39.0
|
1.0
|
N
|
C:VAL48
|
5.0
|
47.3
|
1.0
|
C
|
C:VAL48
|
5.0
|
54.1
|
1.0
|
|
Iron binding site 6 out
of 36 in 6pgk
Go back to
Iron Binding Sites List in 6pgk
Iron binding site 6 out
of 36 in the Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe101
b:51.3
occ:1.00
|
FE2
|
C:SF4101
|
0.0
|
51.3
|
1.0
|
S4
|
C:SF4101
|
2.3
|
44.7
|
1.0
|
S1
|
C:SF4101
|
2.3
|
49.4
|
1.0
|
S3
|
C:SF4101
|
2.3
|
50.1
|
1.0
|
FE1
|
C:SF4101
|
2.7
|
44.8
|
1.0
|
FE3
|
C:SF4101
|
2.7
|
43.5
|
1.0
|
FE4
|
C:SF4101
|
2.7
|
44.4
|
1.0
|
CB
|
C:CYS20
|
2.8
|
66.4
|
1.0
|
CA
|
C:CYS20
|
3.5
|
62.8
|
1.0
|
CD
|
C:PRO21
|
3.8
|
54.3
|
1.0
|
S2
|
C:SF4101
|
3.9
|
41.0
|
1.0
|
CG2
|
C:VAL24
|
4.0
|
58.3
|
1.0
|
OG1
|
C:THR22
|
4.1
|
42.9
|
1.0
|
C
|
C:CYS20
|
4.1
|
60.4
|
1.0
|
CB
|
C:VAL24
|
4.1
|
59.5
|
1.0
|
SG
|
C:CYS50
|
4.2
|
60.3
|
1.0
|
SG
|
C:CYS20
|
4.2
|
84.8
|
1.0
|
N
|
C:PRO21
|
4.3
|
56.8
|
1.0
|
CD1
|
C:LEU25
|
4.4
|
49.2
|
1.0
|
O
|
C:HOH201
|
4.7
|
49.8
|
1.0
|
N
|
C:CYS20
|
4.8
|
60.1
|
1.0
|
N
|
C:THR22
|
4.9
|
50.6
|
1.0
|
SG
|
C:CYS53
|
4.9
|
42.5
|
1.0
|
CG1
|
C:VAL24
|
5.0
|
58.8
|
1.0
|
O
|
C:CYS20
|
5.0
|
63.7
|
1.0
|
|
Iron binding site 7 out
of 36 in 6pgk
Go back to
Iron Binding Sites List in 6pgk
Iron binding site 7 out
of 36 in the Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe101
b:43.5
occ:1.00
|
FE3
|
C:SF4101
|
0.0
|
43.5
|
1.0
|
S1
|
C:SF4101
|
2.3
|
49.4
|
1.0
|
S2
|
C:SF4101
|
2.3
|
41.0
|
1.0
|
S4
|
C:SF4101
|
2.3
|
44.7
|
1.0
|
SG
|
C:CYS53
|
2.4
|
42.5
|
1.0
|
FE2
|
C:SF4101
|
2.7
|
51.3
|
1.0
|
FE4
|
C:SF4101
|
2.7
|
44.4
|
1.0
|
FE1
|
C:SF4101
|
2.7
|
44.8
|
1.0
|
CB
|
C:CYS53
|
3.6
|
48.2
|
1.0
|
S3
|
C:SF4101
|
3.9
|
50.1
|
1.0
|
O
|
C:HOH201
|
3.9
|
49.8
|
1.0
|
N
|
C:CYS53
|
4.0
|
47.2
|
1.0
|
CG1
|
C:VAL66
|
4.2
|
45.3
|
1.0
|
CD1
|
C:LEU25
|
4.3
|
49.2
|
1.0
|
CA
|
C:CYS53
|
4.4
|
49.3
|
1.0
|
CB
|
C:CYS20
|
4.5
|
66.4
|
1.0
|
N
|
C:LYS51
|
4.6
|
43.1
|
1.0
|
N
|
C:ARG52
|
4.6
|
39.7
|
1.0
|
CA
|
C:LYS51
|
4.7
|
41.0
|
1.0
|
SG
|
C:CYS50
|
4.8
|
60.3
|
1.0
|
C
|
C:LYS51
|
4.8
|
39.0
|
1.0
|
|
Iron binding site 8 out
of 36 in 6pgk
Go back to
Iron Binding Sites List in 6pgk
Iron binding site 8 out
of 36 in the Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe101
b:44.4
occ:1.00
|
FE4
|
C:SF4101
|
0.0
|
44.4
|
1.0
|
O
|
C:HOH201
|
2.0
|
49.8
|
1.0
|
S2
|
C:SF4101
|
2.3
|
41.0
|
1.0
|
S1
|
C:SF4101
|
2.3
|
49.4
|
1.0
|
S3
|
C:SF4101
|
2.3
|
50.1
|
1.0
|
FE1
|
C:SF4101
|
2.7
|
44.8
|
1.0
|
FE3
|
C:SF4101
|
2.7
|
43.5
|
1.0
|
FE2
|
C:SF4101
|
2.7
|
51.3
|
1.0
|
SG
|
C:CYS47
|
2.9
|
41.7
|
1.0
|
N
|
C:GLY49
|
3.7
|
53.8
|
1.0
|
S4
|
C:SF4101
|
3.9
|
44.7
|
1.0
|
N
|
C:VAL48
|
3.9
|
47.3
|
1.0
|
CG2
|
C:VAL24
|
4.0
|
58.3
|
1.0
|
CA
|
C:CYS47
|
4.0
|
45.4
|
1.0
|
CB
|
C:CYS47
|
4.1
|
44.7
|
1.0
|
CA
|
C:GLY49
|
4.2
|
51.4
|
1.0
|
CB
|
C:VAL24
|
4.4
|
59.5
|
1.0
|
C
|
C:CYS47
|
4.4
|
45.1
|
1.0
|
CG2
|
C:VAL4
|
4.4
|
52.5
|
1.0
|
CG1
|
C:VAL24
|
4.5
|
58.8
|
1.0
|
SG
|
C:CYS50
|
4.7
|
60.3
|
1.0
|
C
|
C:VAL48
|
4.7
|
54.1
|
1.0
|
N
|
C:CYS50
|
4.8
|
46.9
|
1.0
|
OG1
|
C:THR22
|
4.9
|
42.9
|
1.0
|
CA
|
C:VAL48
|
4.9
|
51.8
|
1.0
|
SG
|
C:CYS53
|
5.0
|
42.5
|
1.0
|
|
Iron binding site 9 out
of 36 in 6pgk
Go back to
Iron Binding Sites List in 6pgk
Iron binding site 9 out
of 36 in the Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe102
b:63.7
occ:1.00
|
FE1
|
C:SF4102
|
0.0
|
63.7
|
1.0
|
S2
|
C:SF4102
|
2.3
|
68.6
|
1.0
|
S4
|
C:SF4102
|
2.3
|
62.6
|
1.0
|
S3
|
C:SF4102
|
2.3
|
63.7
|
1.0
|
SG
|
C:CYS57
|
2.5
|
57.9
|
1.0
|
FE3
|
C:SF4102
|
2.7
|
61.5
|
1.0
|
FE4
|
C:SF4102
|
2.7
|
68.9
|
1.0
|
FE2
|
C:SF4102
|
2.7
|
73.0
|
1.0
|
CB
|
C:CYS57
|
2.8
|
58.0
|
1.0
|
CA
|
C:CYS57
|
3.3
|
59.3
|
1.0
|
CG2
|
C:ILE64
|
3.9
|
43.2
|
1.0
|
S1
|
C:SF4102
|
3.9
|
61.6
|
1.0
|
C
|
C:CYS57
|
4.3
|
64.4
|
1.0
|
CB
|
C:CYS16
|
4.3
|
66.6
|
1.0
|
N
|
C:CYS57
|
4.4
|
61.2
|
1.0
|
CB
|
C:SER63
|
4.5
|
56.9
|
1.0
|
N
|
C:ILE64
|
4.5
|
50.0
|
1.0
|
CD
|
C:PRO58
|
4.5
|
62.5
|
1.0
|
CB
|
C:ILE64
|
4.6
|
43.7
|
1.0
|
SG
|
C:CYS13
|
4.7
|
59.2
|
1.0
|
O
|
C:ALA56
|
4.7
|
62.9
|
1.0
|
N
|
C:PRO58
|
4.7
|
65.1
|
1.0
|
CG2
|
C:THR59
|
4.8
|
58.7
|
1.0
|
OG1
|
C:THR59
|
4.9
|
58.2
|
1.0
|
N
|
C:SER63
|
4.9
|
52.3
|
1.0
|
SG
|
C:CYS10
|
4.9
|
63.2
|
1.0
|
C
|
C:ALA56
|
5.0
|
62.0
|
1.0
|
SG
|
C:CYS16
|
5.0
|
75.7
|
1.0
|
|
Iron binding site 10 out
of 36 in 6pgk
Go back to
Iron Binding Sites List in 6pgk
Iron binding site 10 out
of 36 in the Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Membrane Protein Megahertz Crystallography at the European Xfel, Photosystem I Xfel at 2.9 A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe102
b:73.0
occ:1.00
|
FE2
|
C:SF4102
|
0.0
|
73.0
|
1.0
|
S1
|
C:SF4102
|
2.3
|
61.6
|
1.0
|
S3
|
C:SF4102
|
2.3
|
63.7
|
1.0
|
S4
|
C:SF4102
|
2.3
|
62.6
|
1.0
|
SG
|
C:CYS16
|
2.7
|
75.7
|
1.0
|
CB
|
C:CYS16
|
2.7
|
66.6
|
1.0
|
FE4
|
C:SF4102
|
2.7
|
68.9
|
1.0
|
FE3
|
C:SF4102
|
2.7
|
61.5
|
1.0
|
FE1
|
C:SF4102
|
2.7
|
63.7
|
1.0
|
N
|
C:CYS16
|
3.6
|
62.4
|
1.0
|
CA
|
C:CYS16
|
3.7
|
64.2
|
1.0
|
S2
|
C:SF4102
|
3.9
|
68.6
|
1.0
|
SG
|
C:CYS13
|
4.0
|
59.2
|
1.0
|
SG
|
C:CYS10
|
4.6
|
63.2
|
1.0
|
CB
|
C:ALA39
|
4.6
|
46.1
|
1.0
|
N
|
C:GLN15
|
4.7
|
69.4
|
1.0
|
C
|
C:CYS16
|
4.7
|
61.4
|
1.0
|
CG2
|
C:ILE64
|
4.8
|
43.2
|
1.0
|
C
|
C:GLN15
|
4.8
|
64.9
|
1.0
|
N
|
C:THR14
|
4.9
|
64.6
|
1.0
|
N
|
C:VAL17
|
4.9
|
57.9
|
1.0
|
C
|
C:THR14
|
5.0
|
70.1
|
1.0
|
|
Reference:
C.Gisriel,
J.Coe,
R.Letrun,
O.M.Yefanov,
C.Luna-Chavez,
N.E.Stander,
S.Lisova,
V.Mariani,
M.Kuhn,
S.Aplin,
T.D.Grant,
K.Dorner,
T.Sato,
A.Echelmeier,
J.Cruz Villarreal,
M.S.Hunter,
M.O.Wiedorn,
J.Knoska,
V.Mazalova,
S.Roy-Chowdhury,
J.H.Yang,
A.Jones,
R.Bean,
J.Bielecki,
Y.Kim,
G.Mills,
B.Weinhausen,
J.D.Meza,
N.Al-Qudami,
S.Bajt,
G.Brehm,
S.Botha,
D.Boukhelef,
S.Brockhauser,
B.D.Bruce,
M.A.Coleman,
C.Danilevski,
E.Discianno,
Z.Dobson,
H.Fangohr,
J.M.Martin-Garcia,
Y.Gevorkov,
S.Hauf,
A.Hosseinizadeh,
F.Januschek,
G.K.Ketawala,
C.Kupitz,
L.Maia,
M.Manetti,
M.Messerschmidt,
T.Michelat,
J.Mondal,
A.Ourmazd,
G.Previtali,
I.Sarrou,
S.Schon,
P.Schwander,
M.L.Shelby,
A.Silenzi,
J.Sztuk-Dambietz,
J.Szuba,
M.Turcato,
T.A.White,
K.Wrona,
C.Xu,
M.H.Abdellatif,
J.D.Zook,
J.C.H.Spence,
H.N.Chapman,
A.Barty,
R.A.Kirian,
M.Frank,
A.Ros,
M.Schmidt,
R.Fromme,
A.P.Mancuso,
P.Fromme,
N.A.Zatsepin.
Membrane Protein Megahertz Crystallography at the European Xfel. Nat Commun V. 10 5021 2019.
ISSN: ESSN 2041-1723
PubMed: 31685819
DOI: 10.1038/S41467-019-12955-3
Page generated: Wed Aug 7 05:43:27 2024
|