Iron in PDB 6pm7: The Structure of the Triclinic Crystal Form of Beef Liver Catalase at 1.85 A Resolution
Enzymatic activity of The Structure of the Triclinic Crystal Form of Beef Liver Catalase at 1.85 A Resolution
All present enzymatic activity of The Structure of the Triclinic Crystal Form of Beef Liver Catalase at 1.85 A Resolution:
1.11.1.6;
Protein crystallography data
The structure of The Structure of the Triclinic Crystal Form of Beef Liver Catalase at 1.85 A Resolution, PDB code: 6pm7
was solved by
A.Mcpherson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
121.99 /
1.85
|
Space group
|
P 32 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
140.865,
140.865,
101.840,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
19.2 /
23.2
|
Iron Binding Sites:
The binding sites of Iron atom in the The Structure of the Triclinic Crystal Form of Beef Liver Catalase at 1.85 A Resolution
(pdb code 6pm7). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
The Structure of the Triclinic Crystal Form of Beef Liver Catalase at 1.85 A Resolution, PDB code: 6pm7:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 6pm7
Go back to
Iron Binding Sites List in 6pm7
Iron binding site 1 out
of 2 in the The Structure of the Triclinic Crystal Form of Beef Liver Catalase at 1.85 A Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of The Structure of the Triclinic Crystal Form of Beef Liver Catalase at 1.85 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:46.4
occ:1.00
|
FE
|
A:HEM601
|
0.0
|
46.4
|
1.0
|
ND
|
A:HEM601
|
1.9
|
46.0
|
1.0
|
NA
|
A:HEM601
|
2.0
|
48.4
|
1.0
|
OH
|
A:TYR357
|
2.0
|
43.7
|
1.0
|
NB
|
A:HEM601
|
2.1
|
45.3
|
1.0
|
NC
|
A:HEM601
|
2.1
|
62.5
|
1.0
|
C1D
|
A:HEM601
|
2.9
|
54.3
|
1.0
|
C4D
|
A:HEM601
|
2.9
|
52.2
|
1.0
|
C1A
|
A:HEM601
|
3.0
|
48.0
|
1.0
|
C1B
|
A:HEM601
|
3.0
|
52.0
|
1.0
|
C4C
|
A:HEM601
|
3.0
|
60.5
|
1.0
|
C4B
|
A:HEM601
|
3.0
|
51.1
|
1.0
|
C4A
|
A:HEM601
|
3.1
|
45.5
|
1.0
|
CZ
|
A:TYR357
|
3.1
|
50.2
|
1.0
|
C1C
|
A:HEM601
|
3.1
|
57.3
|
1.0
|
CHD
|
A:HEM601
|
3.4
|
55.3
|
1.0
|
CHA
|
A:HEM601
|
3.4
|
47.4
|
1.0
|
CHB
|
A:HEM601
|
3.4
|
48.0
|
1.0
|
CHC
|
A:HEM601
|
3.5
|
49.8
|
1.0
|
HE
|
A:ARG353
|
3.6
|
49.0
|
1.0
|
HH21
|
A:ARG353
|
3.7
|
52.2
|
1.0
|
HE2
|
A:TYR357
|
3.7
|
43.6
|
1.0
|
O
|
A:HOH860
|
3.8
|
65.9
|
1.0
|
CE2
|
A:TYR357
|
3.8
|
43.6
|
1.0
|
HZ
|
A:PHE160
|
3.8
|
42.0
|
1.0
|
HG21
|
A:VAL73
|
3.9
|
55.5
|
1.0
|
CE1
|
A:TYR357
|
4.0
|
47.1
|
1.0
|
HE1
|
A:TYR357
|
4.0
|
47.1
|
1.0
|
C2D
|
A:HEM601
|
4.1
|
54.9
|
1.0
|
C3D
|
A:HEM601
|
4.2
|
50.8
|
1.0
|
C2A
|
A:HEM601
|
4.3
|
46.0
|
1.0
|
C3A
|
A:HEM601
|
4.3
|
48.3
|
1.0
|
C3C
|
A:HEM601
|
4.3
|
70.4
|
1.0
|
C2B
|
A:HEM601
|
4.3
|
53.8
|
1.0
|
C2C
|
A:HEM601
|
4.3
|
63.8
|
1.0
|
C3B
|
A:HEM601
|
4.3
|
49.5
|
1.0
|
NE
|
A:ARG353
|
4.3
|
49.0
|
1.0
|
HHD
|
A:HEM601
|
4.3
|
55.3
|
1.0
|
HG23
|
A:VAL73
|
4.3
|
55.5
|
1.0
|
HHA
|
A:HEM601
|
4.3
|
47.4
|
1.0
|
NH2
|
A:ARG353
|
4.3
|
52.2
|
1.0
|
HE2
|
A:HIS74
|
4.3
|
50.3
|
1.0
|
CZ
|
A:PHE160
|
4.3
|
42.0
|
1.0
|
HD2
|
A:HIS74
|
4.3
|
48.3
|
1.0
|
HHB
|
A:HEM601
|
4.4
|
48.0
|
1.0
|
HHC
|
A:HEM601
|
4.4
|
49.8
|
1.0
|
CG2
|
A:VAL73
|
4.6
|
55.5
|
1.0
|
NE2
|
A:HIS74
|
4.7
|
50.3
|
1.0
|
CZ
|
A:ARG353
|
4.7
|
50.2
|
1.0
|
CD2
|
A:HIS74
|
4.7
|
48.3
|
1.0
|
HG2
|
A:ARG353
|
4.8
|
45.4
|
1.0
|
HE1
|
A:PHE160
|
4.8
|
45.4
|
1.0
|
HG22
|
A:VAL73
|
4.9
|
55.5
|
1.0
|
CE1
|
A:PHE160
|
4.9
|
45.4
|
1.0
|
HH22
|
A:ARG353
|
4.9
|
52.2
|
1.0
|
HG11
|
A:VAL145
|
5.0
|
44.0
|
1.0
|
|
Iron binding site 2 out
of 2 in 6pm7
Go back to
Iron Binding Sites List in 6pm7
Iron binding site 2 out
of 2 in the The Structure of the Triclinic Crystal Form of Beef Liver Catalase at 1.85 A Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of The Structure of the Triclinic Crystal Form of Beef Liver Catalase at 1.85 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe601
b:44.8
occ:1.00
|
FE
|
B:HEM601
|
0.0
|
44.8
|
1.0
|
OH
|
B:TYR357
|
1.9
|
44.1
|
1.0
|
ND
|
B:HEM601
|
1.9
|
43.3
|
1.0
|
NA
|
B:HEM601
|
2.0
|
42.8
|
1.0
|
NB
|
B:HEM601
|
2.1
|
47.2
|
1.0
|
NC
|
B:HEM601
|
2.1
|
51.7
|
1.0
|
C1D
|
B:HEM601
|
2.9
|
42.1
|
1.0
|
C4D
|
B:HEM601
|
2.9
|
43.4
|
1.0
|
CZ
|
B:TYR357
|
3.0
|
43.6
|
1.0
|
C1A
|
B:HEM601
|
3.0
|
42.3
|
1.0
|
C4B
|
B:HEM601
|
3.0
|
46.4
|
1.0
|
C4C
|
B:HEM601
|
3.0
|
48.1
|
1.0
|
C4A
|
B:HEM601
|
3.1
|
45.5
|
1.0
|
C1B
|
B:HEM601
|
3.1
|
47.7
|
1.0
|
C1C
|
B:HEM601
|
3.1
|
62.0
|
1.0
|
CHA
|
B:HEM601
|
3.4
|
41.5
|
1.0
|
CHD
|
B:HEM601
|
3.4
|
41.0
|
1.0
|
CHC
|
B:HEM601
|
3.5
|
54.1
|
1.0
|
HE
|
B:ARG353
|
3.5
|
42.6
|
1.0
|
CHB
|
B:HEM601
|
3.5
|
51.5
|
1.0
|
HH21
|
B:ARG353
|
3.5
|
50.8
|
1.0
|
HE2
|
B:TYR357
|
3.6
|
38.3
|
1.0
|
CE2
|
B:TYR357
|
3.7
|
38.3
|
1.0
|
CE1
|
B:TYR357
|
3.9
|
41.1
|
1.0
|
HE1
|
B:TYR357
|
3.9
|
41.1
|
1.0
|
HZ
|
B:PHE160
|
3.9
|
53.0
|
1.0
|
O
|
B:HOH732
|
4.0
|
76.2
|
1.0
|
HG21
|
B:VAL73
|
4.0
|
49.2
|
1.0
|
C2D
|
B:HEM601
|
4.2
|
44.2
|
1.0
|
NE
|
B:ARG353
|
4.2
|
42.6
|
1.0
|
C3D
|
B:HEM601
|
4.2
|
42.1
|
1.0
|
NH2
|
B:ARG353
|
4.2
|
50.8
|
1.0
|
C2A
|
B:HEM601
|
4.2
|
41.3
|
1.0
|
C3A
|
B:HEM601
|
4.2
|
43.0
|
1.0
|
C3C
|
B:HEM601
|
4.3
|
61.0
|
1.0
|
C3B
|
B:HEM601
|
4.3
|
44.1
|
1.0
|
C2B
|
B:HEM601
|
4.3
|
46.2
|
1.0
|
HHA
|
B:HEM601
|
4.3
|
41.5
|
1.0
|
C2C
|
B:HEM601
|
4.3
|
63.5
|
1.0
|
HE2
|
B:HIS74
|
4.3
|
46.5
|
1.0
|
HHD
|
B:HEM601
|
4.3
|
41.0
|
1.0
|
HD2
|
B:HIS74
|
4.3
|
44.5
|
1.0
|
HG23
|
B:VAL73
|
4.3
|
49.2
|
1.0
|
HHC
|
B:HEM601
|
4.4
|
54.1
|
1.0
|
HHB
|
B:HEM601
|
4.4
|
51.5
|
1.0
|
CZ
|
B:PHE160
|
4.4
|
53.0
|
1.0
|
CZ
|
B:ARG353
|
4.6
|
50.7
|
1.0
|
CG2
|
B:VAL73
|
4.6
|
49.2
|
1.0
|
NE2
|
B:HIS74
|
4.7
|
46.5
|
1.0
|
CD2
|
B:HIS74
|
4.8
|
44.5
|
1.0
|
HG2
|
B:ARG353
|
4.8
|
39.0
|
1.0
|
HH22
|
B:ARG353
|
4.8
|
50.8
|
1.0
|
HE1
|
B:PHE160
|
4.9
|
55.7
|
1.0
|
HG11
|
B:VAL145
|
4.9
|
47.2
|
1.0
|
HG22
|
B:VAL73
|
4.9
|
49.2
|
1.0
|
CE1
|
B:PHE160
|
5.0
|
55.7
|
1.0
|
HG12
|
B:VAL145
|
5.0
|
47.2
|
1.0
|
CD2
|
B:TYR357
|
5.0
|
39.6
|
1.0
|
|
Reference:
A.Mcpherson,
A.Mcpherson.
N/A N/A.
Page generated: Wed Aug 7 05:43:24 2024
|