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Iron in PDB 6qjv: R2-Like Ligand-Binding Oxidase E69D Mutant with Aerobically Reconstituted Mn/Fe Cofactor

Enzymatic activity of R2-Like Ligand-Binding Oxidase E69D Mutant with Aerobically Reconstituted Mn/Fe Cofactor

All present enzymatic activity of R2-Like Ligand-Binding Oxidase E69D Mutant with Aerobically Reconstituted Mn/Fe Cofactor:
1.17.4.1;

Protein crystallography data

The structure of R2-Like Ligand-Binding Oxidase E69D Mutant with Aerobically Reconstituted Mn/Fe Cofactor, PDB code: 6qjv was solved by J.J.Griese, M.Hogbom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.35 / 1.91
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 55.870, 96.824, 129.200, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 20.4

Other elements in 6qjv:

The structure of R2-Like Ligand-Binding Oxidase E69D Mutant with Aerobically Reconstituted Mn/Fe Cofactor also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the R2-Like Ligand-Binding Oxidase E69D Mutant with Aerobically Reconstituted Mn/Fe Cofactor (pdb code 6qjv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the R2-Like Ligand-Binding Oxidase E69D Mutant with Aerobically Reconstituted Mn/Fe Cofactor, PDB code: 6qjv:

Iron binding site 1 out of 1 in 6qjv

Go back to Iron Binding Sites List in 6qjv
Iron binding site 1 out of 1 in the R2-Like Ligand-Binding Oxidase E69D Mutant with Aerobically Reconstituted Mn/Fe Cofactor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of R2-Like Ligand-Binding Oxidase E69D Mutant with Aerobically Reconstituted Mn/Fe Cofactor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe404

b:26.8
occ:1.00
 O A:HOH511 1.9 29.6 1.0
OE2 A:GLU167 2.0 27.6 1.0
O1 A:PLM401 2.1 39.2 1.0
OE1 A:GLU102 2.1 25.4 1.0
OE2 A:GLU202 2.2 28.9 1.0
ND1 A:HIS205 2.3 24.1 1.0
HG2 A:GLU167 3.0 29.1 1.0
CD A:GLU167 3.0 29.8 1.0
CE1 A:HIS205 3.1 25.9 1.0
CD A:GLU102 3.1 27.1 1.0
CD A:GLU202 3.2 33.1 1.0
C1 A:PLM401 3.2 44.8 1.0
HE1 A:HIS205 3.2 31.1 1.0
CG A:HIS205 3.3 20.1 1.0
OE1 A:GLU202 3.4 32.0 1.0
OE2 A:GLU102 3.5 25.4 1.0
HE2 A:PHE98 3.5 34.0 1.0
HB3 A:HIS205 3.5 25.4 1.0
MN A:MN3402 3.5 23.8 1.0
CG A:GLU167 3.6 24.2 1.0
HB2 A:HIS205 3.6 25.4 1.0
O2 A:PLM401 3.7 38.4 1.0
CB A:HIS205 3.7 21.1 1.0
HA A:GLU202 4.0 29.9 1.0
HE2 A:TYR162 4.0 38.6 1.0
HE1 A:HIS105 4.1 27.0 1.0
OE1 A:GLU167 4.1 27.1 1.0
CE2 A:PHE98 4.1 28.3 1.0
HG21 A:VAL72 4.2 34.1 1.0
HB3 A:GLU167 4.2 29.2 1.0
HG3 A:GLU167 4.3 29.1 1.0
NE2 A:HIS205 4.3 21.6 1.0
CD2 A:HIS205 4.4 22.1 1.0
HZ A:PHE98 4.4 32.1 1.0
CG A:GLU102 4.5 21.6 1.0
H22 A:PLM401 4.5 32.7 1.0
C2 A:PLM401 4.5 27.2 1.0
CG A:GLU202 4.5 27.2 1.0
CB A:GLU167 4.5 24.4 1.0
HG2 A:GLU102 4.6 26.0 1.0
HG3 A:GLU202 4.6 32.7 1.0
CZ A:PHE98 4.7 26.7 1.0
CE1 A:HIS105 4.7 22.5 1.0
HG3 A:GLU102 4.7 26.0 1.0
ND1 A:HIS105 4.8 23.8 1.0
CA A:GLU202 4.9 24.9 1.0
HH A:TYR175 4.9 32.8 1.0
CE2 A:TYR162 4.9 32.2 1.0
H21 A:PLM401 4.9 32.7 1.0
CD2 A:PHE98 5.0 24.8 1.0

Reference:

J.J.Griese, M.Hogbom. R2-Like Ligand-Binding Oxidase E69D Mutant with Aerobically Reconstituted Mn/Fe Cofactor To Be Published.
Page generated: Wed Aug 7 07:53:11 2024

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