Atomistry » Iron » PDB 6qgr-6r2o » 6qk1
Atomistry »
  Iron »
    PDB 6qgr-6r2o »
      6qk1 »

Iron in PDB 6qk1: R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor

Enzymatic activity of R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor

All present enzymatic activity of R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor:
1.17.4.1;

Protein crystallography data

The structure of R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor, PDB code: 6qk1 was solved by J.J.Griese, M.Hogbom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.85 / 1.75
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 55.868, 97.304, 129.112, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 22.1

Other elements in 6qk1:

The structure of R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor (pdb code 6qk1). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor, PDB code: 6qk1:

Iron binding site 1 out of 1 in 6qk1

Go back to Iron Binding Sites List in 6qk1
Iron binding site 1 out of 1 in the R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe404

b:32.5
occ:1.00
 O1 A:PLM401 1.8 32.7 1.0
OE1 A:GLU102 2.0 28.9 1.0
OE2 A:GLU167 2.1 27.8 1.0
OE2 A:GLU202 2.2 31.1 1.0
O A:HOH508 2.2 28.1 1.0
ND1 A:HIS205 2.3 31.1 1.0
C1 A:PLM401 2.9 32.1 1.0
HG2 A:GLU167 2.9 34.1 1.0
CD A:GLU167 3.0 32.0 1.0
CD A:GLU102 3.0 28.4 1.0
CD A:GLU202 3.2 45.8 1.0
CE1 A:HIS205 3.2 25.5 1.0
HE1 A:HIS205 3.2 30.6 1.0
O2 A:PLM401 3.4 39.9 1.0
OE2 A:GLU102 3.4 26.6 1.0
CG A:HIS205 3.4 21.0 1.0
MN A:MN3402 3.5 26.6 1.0
OE1 A:GLU202 3.5 47.9 1.0
CG A:GLU167 3.5 28.5 1.0
HB3 A:HIS205 3.6 28.1 1.0
HB2 A:HIS205 3.7 28.1 1.0
CB A:HIS205 3.8 23.5 1.0
HE2 A:TYR162 3.9 36.7 1.0
HA A:GLU202 4.0 36.0 1.0
HE2 A:PHE98 4.0 37.1 1.0
HG21 A:VAL72 4.1 30.9 1.0
OE1 A:GLU167 4.1 33.3 1.0
HG3 A:GLU167 4.2 34.1 1.0
HB3 A:GLU167 4.2 35.9 1.0
HE1 A:HIS105 4.2 28.1 1.0
C2 A:PLM401 4.3 40.9 1.0
CE2 A:PHE98 4.3 30.9 1.0
HZ A:PHE98 4.3 34.5 1.0
H22 A:PLM401 4.3 49.1 1.0
NE2 A:HIS205 4.4 30.5 1.0
CG A:GLU102 4.4 24.7 1.0
CG A:GLU202 4.5 39.9 1.0
CB A:GLU167 4.5 30.0 1.0
CD2 A:HIS205 4.5 27.3 1.0
HG2 A:GLU102 4.5 29.6 1.0
CZ A:PHE98 4.5 28.8 1.0
HG3 A:GLU202 4.6 47.8 1.0
H21 A:PLM401 4.6 49.1 1.0
HG3 A:GLU102 4.6 29.6 1.0
O A:HOH511 4.7 31.5 1.0
CE2 A:TYR162 4.8 30.6 1.0
CE1 A:HIS105 4.8 23.4 1.0
ND1 A:HIS105 4.8 22.8 1.0
CA A:GLU202 4.9 30.0 1.0
CG2 A:VAL72 4.9 25.8 1.0

Reference:

J.J.Griese, M.Hogbom. R2-Like Ligand-Binding Oxidase Y175F Mutant with Aerobically Reconstituted Mn/Fe Cofactor To Be Published.
Page generated: Wed Aug 7 07:53:11 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy