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Iron in PDB 6qk7: Elongator Catalytic Subcomplex ELP123 Lobe

Enzymatic activity of Elongator Catalytic Subcomplex ELP123 Lobe

All present enzymatic activity of Elongator Catalytic Subcomplex ELP123 Lobe:
2.3.1.48;

Iron Binding Sites:

The binding sites of Iron atom in the Elongator Catalytic Subcomplex ELP123 Lobe (pdb code 6qk7). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Elongator Catalytic Subcomplex ELP123 Lobe, PDB code: 6qk7:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 6qk7

Go back to Iron Binding Sites List in 6qk7
Iron binding site 1 out of 4 in the Elongator Catalytic Subcomplex ELP123 Lobe


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Elongator Catalytic Subcomplex ELP123 Lobe within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe601

b:67.7
occ:1.00
FE1 C:SF4601 0.0 67.7 1.0
S2 C:SF4601 2.1 67.7 1.0
S4 C:SF4601 2.1 67.7 1.0
S3 C:SF4601 2.1 67.7 1.0
SG C:CYS108 2.3 58.1 1.0
FE4 C:SF4601 2.9 67.7 1.0
FE2 C:SF4601 3.0 67.7 1.0
FE3 C:SF4601 3.0 67.7 1.0
S1 C:SF4601 3.6 67.7 1.0
CB C:CYS108 3.9 58.1 1.0
CG C:GLN134 4.0 57.4 1.0
CE1 C:HIS110 4.0 61.8 1.0
SG C:CYS121 4.5 61.7 1.0
OG1 C:THR182 4.6 59.9 1.0
NE2 C:HIS110 4.7 61.8 1.0
CD C:GLN134 4.7 57.4 1.0
NE2 C:GLN134 4.8 57.4 1.0

Iron binding site 2 out of 4 in 6qk7

Go back to Iron Binding Sites List in 6qk7
Iron binding site 2 out of 4 in the Elongator Catalytic Subcomplex ELP123 Lobe


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Elongator Catalytic Subcomplex ELP123 Lobe within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe601

b:67.7
occ:1.00
FE2 C:SF4601 0.0 67.7 1.0
S4 C:SF4601 2.1 67.7 1.0
S1 C:SF4601 2.1 67.7 1.0
S3 C:SF4601 2.1 67.7 1.0
FE1 C:SF4601 3.0 67.7 1.0
FE3 C:SF4601 3.0 67.7 1.0
FE4 C:SF4601 3.1 67.7 1.0
S2 C:SF4601 3.7 67.7 1.0
NH1 C:ARG269 3.8 60.1 1.0
C5' C:5AD602 4.6 20.0 1.0
CZ C:ARG269 4.7 60.1 1.0
NH2 C:ARG269 4.7 60.1 1.0
SG C:CYS108 4.9 58.1 1.0

Iron binding site 3 out of 4 in 6qk7

Go back to Iron Binding Sites List in 6qk7
Iron binding site 3 out of 4 in the Elongator Catalytic Subcomplex ELP123 Lobe


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Elongator Catalytic Subcomplex ELP123 Lobe within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe601

b:67.7
occ:1.00
FE3 C:SF4601 0.0 67.7 1.0
S2 C:SF4601 2.1 67.7 1.0
S4 C:SF4601 2.1 67.7 1.0
S1 C:SF4601 2.1 67.7 1.0
SG C:CYS118 2.3 65.3 1.0
CB C:CYS118 3.0 65.3 1.0
FE4 C:SF4601 3.0 67.7 1.0
FE2 C:SF4601 3.0 67.7 1.0
FE1 C:SF4601 3.0 67.7 1.0
NH1 C:ARG269 3.6 60.1 1.0
S3 C:SF4601 3.7 67.7 1.0
CE1 C:HIS110 3.9 61.8 1.0
NE2 C:HIS110 3.9 61.8 1.0
N C:CYS118 4.0 65.3 1.0
CA C:CYS118 4.1 65.3 1.0
CB C:CYS121 4.6 61.7 1.0
CZ C:ARG269 4.7 60.1 1.0
OH C:TYR120 4.8 60.3 1.0
SG C:CYS108 4.9 58.1 1.0
SG C:CYS121 5.0 61.7 1.0

Iron binding site 4 out of 4 in 6qk7

Go back to Iron Binding Sites List in 6qk7
Iron binding site 4 out of 4 in the Elongator Catalytic Subcomplex ELP123 Lobe


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Elongator Catalytic Subcomplex ELP123 Lobe within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe601

b:67.7
occ:1.00
FE4 C:SF4601 0.0 67.7 1.0
S3 C:SF4601 2.1 67.7 1.0
S2 C:SF4601 2.1 67.7 1.0
S1 C:SF4601 2.1 67.7 1.0
SG C:CYS121 2.3 61.7 1.0
CB C:CYS121 2.8 61.7 1.0
FE1 C:SF4601 2.9 67.7 1.0
FE3 C:SF4601 3.0 67.7 1.0
FE2 C:SF4601 3.1 67.7 1.0
S4 C:SF4601 3.7 67.7 1.0
CA C:CYS121 4.1 61.7 1.0
NE2 C:GLN134 4.3 57.4 1.0
CB C:SER135 4.3 58.6 1.0
CG C:GLN134 4.3 57.4 1.0
CB C:CYS118 4.5 65.3 1.0
CD C:GLN134 4.8 57.4 1.0
SG C:CYS118 4.9 65.3 1.0
N C:CYS121 4.9 61.7 1.0
C8 C:5AD602 4.9 20.0 1.0

Reference:

M.I.Dauden, M.Jaciuk, F.Weis, T.Y.Lin, C.Kleindienst, N.E.H.Abbassi, H.Khatter, R.Krutyholowa, K.D.Breunig, J.Kosinski, C.W.Muller, S.Glatt. Molecular Basis of Trna Recognition By the Elongator Complex. Sci Adv V. 5 W2326 2019.
ISSN: ESSN 2375-2548
PubMed: 31309145
DOI: 10.1126/SCIADV.AAW2326
Page generated: Wed Aug 7 07:54:42 2024

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