Iron in PDB 6qvm: Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens
Protein crystallography data
The structure of Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens, PDB code: 6qvm
was solved by
E.M.Osipov,
N.I.Dergousova,
K.M.Boyko,
T.V.Tikhonova,
S.F.Gavrilov,
V.O.Popov,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
66.43 /
2.50
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
77.679,
193.980,
170.779,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17.8 /
21
|
Other elements in 6qvm:
The structure of Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Iron atom in the Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens
(pdb code 6qvm). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 11 binding sites of Iron where determined in the
Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens, PDB code: 6qvm:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 11 in 6qvm
Go back to
Iron Binding Sites List in 6qvm
Iron binding site 1 out
of 11 in the Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe701
b:29.9
occ:1.00
|
FE
|
A:HEC701
|
0.0
|
29.9
|
1.0
|
NE2
|
A:HIS16
|
1.9
|
28.7
|
1.0
|
N
|
A:THR1
|
2.0
|
32.4
|
1.0
|
NB
|
A:HEC701
|
2.0
|
31.1
|
1.0
|
NA
|
A:HEC701
|
2.0
|
26.8
|
1.0
|
NC
|
A:HEC701
|
2.1
|
25.6
|
1.0
|
ND
|
A:HEC701
|
2.1
|
32.0
|
1.0
|
CE1
|
A:HIS16
|
2.8
|
30.8
|
1.0
|
CD2
|
A:HIS16
|
3.0
|
24.5
|
1.0
|
C1B
|
A:HEC701
|
3.0
|
29.3
|
1.0
|
CA
|
A:THR1
|
3.1
|
40.1
|
1.0
|
C4A
|
A:HEC701
|
3.1
|
32.3
|
1.0
|
C1A
|
A:HEC701
|
3.1
|
34.3
|
1.0
|
C4B
|
A:HEC701
|
3.1
|
31.9
|
1.0
|
C1C
|
A:HEC701
|
3.1
|
29.5
|
1.0
|
C4C
|
A:HEC701
|
3.1
|
30.7
|
1.0
|
C4D
|
A:HEC701
|
3.1
|
27.2
|
1.0
|
C1D
|
A:HEC701
|
3.1
|
24.1
|
1.0
|
CHB
|
A:HEC701
|
3.4
|
28.8
|
1.0
|
CHA
|
A:HEC701
|
3.4
|
28.2
|
1.0
|
CHC
|
A:HEC701
|
3.4
|
31.7
|
1.0
|
CHD
|
A:HEC701
|
3.5
|
26.2
|
1.0
|
C
|
A:THR1
|
3.9
|
43.5
|
1.0
|
O
|
A:THR1
|
3.9
|
50.3
|
1.0
|
ND1
|
A:HIS16
|
4.0
|
24.9
|
1.0
|
CG
|
A:HIS16
|
4.1
|
25.7
|
1.0
|
C2B
|
A:HEC701
|
4.3
|
39.2
|
1.0
|
C3A
|
A:HEC701
|
4.3
|
26.0
|
1.0
|
C3B
|
A:HEC701
|
4.3
|
37.6
|
1.0
|
CB
|
A:THR1
|
4.3
|
38.1
|
1.0
|
C2A
|
A:HEC701
|
4.3
|
29.9
|
1.0
|
C2C
|
A:HEC701
|
4.3
|
25.0
|
1.0
|
C3C
|
A:HEC701
|
4.3
|
24.7
|
1.0
|
C3D
|
A:HEC701
|
4.3
|
29.5
|
1.0
|
C2D
|
A:HEC701
|
4.3
|
33.5
|
1.0
|
CG2
|
A:THR1
|
4.4
|
31.5
|
1.0
|
CD2
|
A:TYR4
|
4.7
|
35.6
|
1.0
|
OG1
|
A:THR1
|
4.9
|
44.6
|
1.0
|
N
|
A:GLU2
|
5.0
|
40.1
|
1.0
|
|
Iron binding site 2 out
of 11 in 6qvm
Go back to
Iron Binding Sites List in 6qvm
Iron binding site 2 out
of 11 in the Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe702
b:30.6
occ:1.00
|
FE
|
A:HEC702
|
0.0
|
30.6
|
1.0
|
NE2
|
A:HIS40
|
1.9
|
37.1
|
1.0
|
NC
|
A:HEC702
|
2.0
|
31.2
|
1.0
|
NB
|
A:HEC702
|
2.1
|
31.9
|
1.0
|
NE2
|
A:HIS22
|
2.1
|
30.3
|
1.0
|
NA
|
A:HEC702
|
2.1
|
34.9
|
1.0
|
ND
|
A:HEC702
|
2.1
|
32.0
|
1.0
|
CE1
|
A:HIS40
|
2.8
|
45.6
|
1.0
|
CD2
|
A:HIS22
|
3.0
|
27.5
|
1.0
|
C4C
|
A:HEC702
|
3.0
|
32.4
|
1.0
|
CD2
|
A:HIS40
|
3.1
|
33.4
|
1.0
|
C1D
|
A:HEC702
|
3.1
|
28.2
|
1.0
|
C1B
|
A:HEC702
|
3.1
|
33.7
|
1.0
|
C1C
|
A:HEC702
|
3.1
|
34.1
|
1.0
|
C4A
|
A:HEC702
|
3.1
|
33.9
|
1.0
|
C4B
|
A:HEC702
|
3.1
|
33.8
|
1.0
|
CE1
|
A:HIS22
|
3.1
|
26.7
|
1.0
|
C4D
|
A:HEC702
|
3.1
|
34.3
|
1.0
|
C1A
|
A:HEC702
|
3.1
|
39.1
|
1.0
|
CHD
|
A:HEC702
|
3.4
|
30.3
|
1.0
|
CHB
|
A:HEC702
|
3.4
|
31.5
|
1.0
|
CHC
|
A:HEC702
|
3.5
|
34.1
|
1.0
|
CHA
|
A:HEC702
|
3.5
|
33.6
|
1.0
|
ND1
|
A:HIS40
|
4.0
|
34.5
|
1.0
|
CG
|
A:HIS40
|
4.1
|
34.0
|
1.0
|
CG
|
A:HIS22
|
4.2
|
27.2
|
1.0
|
ND1
|
A:HIS22
|
4.2
|
28.4
|
1.0
|
C3C
|
A:HEC702
|
4.3
|
30.5
|
1.0
|
C2B
|
A:HEC702
|
4.3
|
37.1
|
1.0
|
C2C
|
A:HEC702
|
4.3
|
28.4
|
1.0
|
C3B
|
A:HEC702
|
4.3
|
34.0
|
1.0
|
C2D
|
A:HEC702
|
4.3
|
31.2
|
1.0
|
C3A
|
A:HEC702
|
4.3
|
36.5
|
1.0
|
C3D
|
A:HEC702
|
4.3
|
34.8
|
1.0
|
C2A
|
A:HEC702
|
4.3
|
38.7
|
1.0
|
|
Iron binding site 3 out
of 11 in 6qvm
Go back to
Iron Binding Sites List in 6qvm
Iron binding site 3 out
of 11 in the Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe703
b:24.1
occ:1.00
|
FE
|
A:HEC703
|
0.0
|
24.1
|
1.0
|
NE2
|
A:HIS210
|
1.9
|
27.1
|
1.0
|
NE2
|
A:HIS338
|
1.9
|
30.3
|
1.0
|
NC
|
A:HEC703
|
2.0
|
20.5
|
1.0
|
NA
|
A:HEC703
|
2.0
|
19.5
|
1.0
|
ND
|
A:HEC703
|
2.1
|
23.9
|
1.0
|
NB
|
A:HEC703
|
2.1
|
23.9
|
1.0
|
CE1
|
A:HIS338
|
2.8
|
29.9
|
1.0
|
CE1
|
A:HIS210
|
2.9
|
34.2
|
1.0
|
CD2
|
A:HIS210
|
3.0
|
28.7
|
1.0
|
CD2
|
A:HIS338
|
3.0
|
28.6
|
1.0
|
C1D
|
A:HEC703
|
3.1
|
25.4
|
1.0
|
C1A
|
A:HEC703
|
3.1
|
26.9
|
1.0
|
C1C
|
A:HEC703
|
3.1
|
22.6
|
1.0
|
C4B
|
A:HEC703
|
3.1
|
21.5
|
1.0
|
C4A
|
A:HEC703
|
3.1
|
23.9
|
1.0
|
C1B
|
A:HEC703
|
3.1
|
19.7
|
1.0
|
C4C
|
A:HEC703
|
3.1
|
28.5
|
1.0
|
C4D
|
A:HEC703
|
3.1
|
25.7
|
1.0
|
CHD
|
A:HEC703
|
3.4
|
25.4
|
1.0
|
CHA
|
A:HEC703
|
3.4
|
25.1
|
1.0
|
CHC
|
A:HEC703
|
3.4
|
27.9
|
1.0
|
CHB
|
A:HEC703
|
3.4
|
19.2
|
1.0
|
ND1
|
A:HIS338
|
4.0
|
26.5
|
1.0
|
ND1
|
A:HIS210
|
4.0
|
25.0
|
1.0
|
CG
|
A:HIS210
|
4.1
|
25.0
|
1.0
|
CG
|
A:HIS338
|
4.1
|
30.3
|
1.0
|
C2B
|
A:HEC703
|
4.3
|
21.1
|
1.0
|
C3B
|
A:HEC703
|
4.3
|
22.4
|
1.0
|
C2A
|
A:HEC703
|
4.3
|
24.7
|
1.0
|
C3A
|
A:HEC703
|
4.3
|
25.3
|
1.0
|
C2D
|
A:HEC703
|
4.3
|
30.9
|
1.0
|
C2C
|
A:HEC703
|
4.3
|
28.7
|
1.0
|
C3C
|
A:HEC703
|
4.3
|
27.9
|
1.0
|
C3D
|
A:HEC703
|
4.3
|
27.1
|
1.0
|
|
Iron binding site 4 out
of 11 in 6qvm
Go back to
Iron Binding Sites List in 6qvm
Iron binding site 4 out
of 11 in the Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe704
b:36.7
occ:1.00
|
FE
|
A:HEC704
|
0.0
|
36.7
|
1.0
|
NC
|
A:HEC704
|
2.0
|
33.4
|
1.0
|
NB
|
A:HEC704
|
2.0
|
27.4
|
1.0
|
NA
|
A:HEC704
|
2.1
|
34.5
|
1.0
|
ND
|
A:HEC704
|
2.1
|
28.1
|
1.0
|
O
|
A:HOH880
|
2.8
|
50.3
|
1.0
|
NE2
|
A:HIS295
|
2.9
|
40.9
|
1.0
|
C1B
|
A:HEC704
|
3.1
|
32.0
|
1.0
|
C1D
|
A:HEC704
|
3.1
|
29.8
|
1.0
|
C4C
|
A:HEC704
|
3.1
|
28.5
|
1.0
|
C4B
|
A:HEC704
|
3.1
|
29.6
|
1.0
|
C1C
|
A:HEC704
|
3.1
|
27.0
|
1.0
|
C4A
|
A:HEC704
|
3.1
|
35.6
|
1.0
|
C4D
|
A:HEC704
|
3.1
|
28.9
|
1.0
|
C1A
|
A:HEC704
|
3.1
|
31.8
|
1.0
|
CHD
|
A:HEC704
|
3.4
|
28.8
|
1.0
|
NE2
|
A:HIS369
|
3.4
|
37.6
|
1.0
|
CHB
|
A:HEC704
|
3.4
|
32.8
|
1.0
|
CHC
|
A:HEC704
|
3.4
|
28.1
|
1.0
|
CHA
|
A:HEC704
|
3.5
|
26.5
|
1.0
|
CE1
|
A:HIS295
|
3.6
|
36.1
|
1.0
|
CD2
|
A:HIS369
|
4.0
|
26.6
|
1.0
|
CD2
|
A:HIS295
|
4.1
|
24.4
|
1.0
|
CE1
|
A:HIS369
|
4.3
|
34.1
|
1.0
|
C2B
|
A:HEC704
|
4.3
|
34.6
|
1.0
|
C3B
|
A:HEC704
|
4.3
|
35.2
|
1.0
|
C3C
|
A:HEC704
|
4.3
|
28.8
|
1.0
|
C2C
|
A:HEC704
|
4.3
|
29.2
|
1.0
|
C2D
|
A:HEC704
|
4.3
|
24.3
|
1.0
|
C2A
|
A:HEC704
|
4.3
|
40.9
|
1.0
|
C3A
|
A:HEC704
|
4.3
|
38.7
|
1.0
|
C3D
|
A:HEC704
|
4.3
|
31.4
|
1.0
|
CE
|
A:MET223
|
4.5
|
34.3
|
1.0
|
ND1
|
A:HIS295
|
4.9
|
22.9
|
1.0
|
|
Iron binding site 5 out
of 11 in 6qvm
Go back to
Iron Binding Sites List in 6qvm
Iron binding site 5 out
of 11 in the Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe705
b:25.8
occ:1.00
|
FE
|
A:HEC705
|
0.0
|
25.8
|
1.0
|
NE2
|
A:HIS332
|
1.9
|
30.3
|
1.0
|
NE2
|
A:HIS457
|
1.9
|
24.9
|
1.0
|
NC
|
A:HEC705
|
2.0
|
23.4
|
1.0
|
NB
|
A:HEC705
|
2.1
|
22.3
|
1.0
|
NA
|
A:HEC705
|
2.1
|
24.4
|
1.0
|
ND
|
A:HEC705
|
2.1
|
27.0
|
1.0
|
CE1
|
A:HIS332
|
2.7
|
25.5
|
1.0
|
CE1
|
A:HIS457
|
2.8
|
26.3
|
1.0
|
C1C
|
A:HEC705
|
3.1
|
19.0
|
1.0
|
CD2
|
A:HIS457
|
3.1
|
21.1
|
1.0
|
C4B
|
A:HEC705
|
3.1
|
22.3
|
1.0
|
C1D
|
A:HEC705
|
3.1
|
31.1
|
1.0
|
C4C
|
A:HEC705
|
3.1
|
26.1
|
1.0
|
C4D
|
A:HEC705
|
3.1
|
31.0
|
1.0
|
C1B
|
A:HEC705
|
3.1
|
25.4
|
1.0
|
C1A
|
A:HEC705
|
3.1
|
24.4
|
1.0
|
C4A
|
A:HEC705
|
3.1
|
22.9
|
1.0
|
CD2
|
A:HIS332
|
3.1
|
28.5
|
1.0
|
CHC
|
A:HEC705
|
3.4
|
19.8
|
1.0
|
CHA
|
A:HEC705
|
3.4
|
25.0
|
1.0
|
CHD
|
A:HEC705
|
3.4
|
26.7
|
1.0
|
CHB
|
A:HEC705
|
3.5
|
22.3
|
1.0
|
ND1
|
A:HIS332
|
3.9
|
21.5
|
1.0
|
ND1
|
A:HIS457
|
4.0
|
24.2
|
1.0
|
CG
|
A:HIS457
|
4.1
|
23.7
|
1.0
|
CG
|
A:HIS332
|
4.1
|
25.9
|
1.0
|
C2B
|
A:HEC705
|
4.3
|
22.8
|
1.0
|
C2C
|
A:HEC705
|
4.3
|
21.5
|
1.0
|
C3B
|
A:HEC705
|
4.3
|
22.2
|
1.0
|
C3C
|
A:HEC705
|
4.3
|
22.7
|
1.0
|
C2D
|
A:HEC705
|
4.3
|
29.5
|
1.0
|
C3D
|
A:HEC705
|
4.3
|
31.3
|
1.0
|
C3A
|
A:HEC705
|
4.3
|
28.0
|
1.0
|
C2A
|
A:HEC705
|
4.3
|
30.4
|
1.0
|
CE2
|
A:PHE212
|
4.8
|
31.7
|
1.0
|
|
Iron binding site 6 out
of 11 in 6qvm
Go back to
Iron Binding Sites List in 6qvm
Iron binding site 6 out
of 11 in the Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe706
b:22.8
occ:1.00
|
FE
|
A:HEC706
|
0.0
|
22.8
|
1.0
|
NE2
|
A:HIS220
|
1.9
|
25.9
|
1.0
|
NE2
|
A:HIS364
|
2.0
|
36.0
|
1.0
|
NA
|
A:HEC706
|
2.0
|
25.4
|
1.0
|
NC
|
A:HEC706
|
2.1
|
19.1
|
1.0
|
NB
|
A:HEC706
|
2.1
|
18.4
|
1.0
|
ND
|
A:HEC706
|
2.1
|
19.0
|
1.0
|
CE1
|
A:HIS364
|
2.8
|
35.2
|
1.0
|
CE1
|
A:HIS220
|
2.8
|
24.5
|
1.0
|
C1A
|
A:HEC706
|
3.0
|
24.6
|
1.0
|
CD2
|
A:HIS220
|
3.0
|
21.4
|
1.0
|
C4D
|
A:HEC706
|
3.1
|
22.5
|
1.0
|
C1C
|
A:HEC706
|
3.1
|
17.9
|
1.0
|
C4B
|
A:HEC706
|
3.1
|
19.6
|
1.0
|
C4A
|
A:HEC706
|
3.1
|
24.9
|
1.0
|
C1B
|
A:HEC706
|
3.1
|
22.6
|
1.0
|
C4C
|
A:HEC706
|
3.1
|
20.8
|
1.0
|
C1D
|
A:HEC706
|
3.1
|
21.1
|
1.0
|
CD2
|
A:HIS364
|
3.1
|
33.5
|
1.0
|
CHA
|
A:HEC706
|
3.4
|
20.8
|
1.0
|
CHC
|
A:HEC706
|
3.4
|
23.1
|
1.0
|
CHB
|
A:HEC706
|
3.5
|
22.4
|
1.0
|
CHD
|
A:HEC706
|
3.5
|
21.2
|
1.0
|
ND1
|
A:HIS364
|
4.0
|
30.6
|
1.0
|
ND1
|
A:HIS220
|
4.0
|
23.3
|
1.0
|
CG
|
A:HIS220
|
4.1
|
21.8
|
1.0
|
CG
|
A:HIS364
|
4.1
|
32.4
|
1.0
|
C2A
|
A:HEC706
|
4.3
|
27.8
|
1.0
|
C3A
|
A:HEC706
|
4.3
|
26.7
|
1.0
|
C3D
|
A:HEC706
|
4.3
|
24.0
|
1.0
|
C2B
|
A:HEC706
|
4.3
|
20.3
|
1.0
|
C2C
|
A:HEC706
|
4.3
|
18.0
|
1.0
|
C3B
|
A:HEC706
|
4.3
|
18.3
|
1.0
|
C3C
|
A:HEC706
|
4.3
|
20.2
|
1.0
|
C2D
|
A:HEC706
|
4.3
|
23.8
|
1.0
|
CMD
|
A:HEC704
|
4.8
|
32.6
|
1.0
|
|
Iron binding site 7 out
of 11 in 6qvm
Go back to
Iron Binding Sites List in 6qvm
Iron binding site 7 out
of 11 in the Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe707
b:83.5
occ:1.00
|
FE
|
A:HEC707
|
0.0
|
83.5
|
1.0
|
NC
|
A:HEC707
|
2.0
|
76.3
|
1.0
|
NB
|
A:HEC707
|
2.1
|
92.9
|
1.0
|
NA
|
A:HEC707
|
2.1
|
92.2
|
1.0
|
ND
|
A:HEC707
|
2.1
|
81.6
|
1.0
|
NE2
|
A:HIS412
|
2.4
|
73.0
|
1.0
|
C1D
|
A:HEC707
|
3.1
|
71.6
|
1.0
|
C4C
|
A:HEC707
|
3.1
|
67.0
|
1.0
|
C1C
|
A:HEC707
|
3.1
|
83.8
|
1.0
|
C4A
|
A:HEC707
|
3.1
|
0.4
|
1.0
|
C1B
|
A:HEC707
|
3.1
|
92.0
|
1.0
|
C4B
|
A:HEC707
|
3.1
|
95.2
|
1.0
|
C1A
|
A:HEC707
|
3.1
|
94.9
|
1.0
|
C4D
|
A:HEC707
|
3.1
|
78.4
|
1.0
|
CE1
|
A:HIS412
|
3.1
|
55.7
|
1.0
|
CHD
|
A:HEC707
|
3.4
|
64.3
|
1.0
|
CHB
|
A:HEC707
|
3.5
|
94.9
|
1.0
|
CHC
|
A:HEC707
|
3.5
|
94.0
|
1.0
|
CHA
|
A:HEC707
|
3.5
|
81.7
|
1.0
|
CD2
|
A:HIS412
|
3.5
|
50.0
|
1.0
|
NE2
|
A:HIS494
|
4.1
|
78.1
|
1.0
|
C2C
|
A:HEC707
|
4.3
|
69.6
|
1.0
|
C3C
|
A:HEC707
|
4.3
|
69.2
|
1.0
|
C2B
|
A:HEC707
|
4.3
|
90.6
|
1.0
|
C2D
|
A:HEC707
|
4.3
|
87.9
|
1.0
|
C3A
|
A:HEC707
|
4.3
|
0.6
|
1.0
|
ND1
|
A:HIS412
|
4.3
|
50.1
|
1.0
|
C3B
|
A:HEC707
|
4.3
|
96.7
|
1.0
|
C2A
|
A:HEC707
|
4.3
|
0.7
|
1.0
|
C3D
|
A:HEC707
|
4.3
|
84.8
|
1.0
|
CG
|
A:HIS412
|
4.5
|
55.0
|
1.0
|
CD2
|
A:HIS494
|
4.6
|
66.4
|
1.0
|
O
|
A:HOH1018
|
4.7
|
59.9
|
1.0
|
CD1
|
A:ILE398
|
4.8
|
78.0
|
1.0
|
|
Iron binding site 8 out
of 11 in 6qvm
Go back to
Iron Binding Sites List in 6qvm
Iron binding site 8 out
of 11 in the Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe708
b:26.4
occ:1.00
|
FE
|
A:HEC708
|
0.0
|
26.4
|
1.0
|
NE2
|
A:HIS454
|
2.0
|
32.8
|
1.0
|
NB
|
A:HEC708
|
2.0
|
25.4
|
1.0
|
NA
|
A:HEC708
|
2.0
|
25.5
|
1.0
|
ND
|
A:HEC708
|
2.1
|
24.4
|
1.0
|
NC
|
A:HEC708
|
2.1
|
30.9
|
1.0
|
NE2
|
A:HIS536
|
2.1
|
34.0
|
1.0
|
CE1
|
A:HIS454
|
2.9
|
34.0
|
1.0
|
CE1
|
A:HIS536
|
3.0
|
30.7
|
1.0
|
C1B
|
A:HEC708
|
3.0
|
26.1
|
1.0
|
CD2
|
A:HIS454
|
3.0
|
25.1
|
1.0
|
C4A
|
A:HEC708
|
3.1
|
26.1
|
1.0
|
C4B
|
A:HEC708
|
3.1
|
29.8
|
1.0
|
C1A
|
A:HEC708
|
3.1
|
28.2
|
1.0
|
C1D
|
A:HEC708
|
3.1
|
25.1
|
1.0
|
C4D
|
A:HEC708
|
3.1
|
27.1
|
1.0
|
CD2
|
A:HIS536
|
3.1
|
31.9
|
1.0
|
C4C
|
A:HEC708
|
3.1
|
33.6
|
1.0
|
C1C
|
A:HEC708
|
3.1
|
33.4
|
1.0
|
CHB
|
A:HEC708
|
3.4
|
23.6
|
1.0
|
CHA
|
A:HEC708
|
3.4
|
27.5
|
1.0
|
CHD
|
A:HEC708
|
3.4
|
28.7
|
1.0
|
CHC
|
A:HEC708
|
3.5
|
29.1
|
1.0
|
ND1
|
A:HIS454
|
4.0
|
21.3
|
1.0
|
CG
|
A:HIS454
|
4.1
|
25.9
|
1.0
|
ND1
|
A:HIS536
|
4.1
|
31.3
|
1.0
|
CG
|
A:HIS536
|
4.2
|
31.2
|
1.0
|
C2B
|
A:HEC708
|
4.3
|
25.0
|
1.0
|
C3B
|
A:HEC708
|
4.3
|
30.1
|
1.0
|
C3A
|
A:HEC708
|
4.3
|
26.6
|
1.0
|
C2A
|
A:HEC708
|
4.3
|
29.2
|
1.0
|
C2D
|
A:HEC708
|
4.3
|
30.3
|
1.0
|
C3D
|
A:HEC708
|
4.3
|
29.1
|
1.0
|
C3C
|
A:HEC708
|
4.3
|
33.3
|
1.0
|
C2C
|
A:HEC708
|
4.3
|
36.1
|
1.0
|
CE
|
A:MET531
|
4.8
|
29.0
|
1.0
|
|
Iron binding site 9 out
of 11 in 6qvm
Go back to
Iron Binding Sites List in 6qvm
Iron binding site 9 out
of 11 in the Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe709
b:35.4
occ:1.00
|
FE
|
A:HEC709
|
0.0
|
35.4
|
1.0
|
NE2
|
A:HIS478
|
2.0
|
51.3
|
1.0
|
NC
|
A:HEC709
|
2.0
|
32.0
|
1.0
|
NE2
|
A:HIS391
|
2.0
|
41.2
|
1.0
|
NA
|
A:HEC709
|
2.0
|
28.1
|
1.0
|
NB
|
A:HEC709
|
2.1
|
32.7
|
1.0
|
ND
|
A:HEC709
|
2.1
|
34.4
|
1.0
|
CE1
|
A:HIS478
|
2.6
|
49.1
|
1.0
|
CE1
|
A:HIS391
|
3.0
|
43.1
|
1.0
|
CD2
|
A:HIS391
|
3.0
|
40.6
|
1.0
|
C4C
|
A:HEC709
|
3.0
|
34.3
|
1.0
|
C1C
|
A:HEC709
|
3.0
|
35.5
|
1.0
|
C1A
|
A:HEC709
|
3.0
|
34.1
|
1.0
|
C4A
|
A:HEC709
|
3.1
|
34.5
|
1.0
|
C4B
|
A:HEC709
|
3.1
|
36.9
|
1.0
|
C1B
|
A:HEC709
|
3.1
|
35.6
|
1.0
|
C1D
|
A:HEC709
|
3.1
|
33.9
|
1.0
|
C4D
|
A:HEC709
|
3.1
|
32.5
|
1.0
|
CD2
|
A:HIS478
|
3.2
|
46.8
|
1.0
|
CHD
|
A:HEC709
|
3.4
|
33.4
|
1.0
|
CHC
|
A:HEC709
|
3.4
|
33.4
|
1.0
|
CHA
|
A:HEC709
|
3.4
|
32.8
|
1.0
|
CHB
|
A:HEC709
|
3.4
|
35.1
|
1.0
|
ND1
|
A:HIS478
|
3.9
|
44.1
|
1.0
|
ND1
|
A:HIS391
|
4.1
|
35.9
|
1.0
|
CG
|
A:HIS391
|
4.1
|
38.7
|
1.0
|
CG
|
A:HIS478
|
4.2
|
44.5
|
1.0
|
C3C
|
A:HEC709
|
4.2
|
33.2
|
1.0
|
C2C
|
A:HEC709
|
4.3
|
34.3
|
1.0
|
C2A
|
A:HEC709
|
4.3
|
32.1
|
1.0
|
C3A
|
A:HEC709
|
4.3
|
31.7
|
1.0
|
C3B
|
A:HEC709
|
4.3
|
41.5
|
1.0
|
C2B
|
A:HEC709
|
4.3
|
36.8
|
1.0
|
C2D
|
A:HEC709
|
4.3
|
35.6
|
1.0
|
C3D
|
A:HEC709
|
4.3
|
39.5
|
1.0
|
|
Iron binding site 10 out
of 11 in 6qvm
Go back to
Iron Binding Sites List in 6qvm
Iron binding site 10 out
of 11 in the Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Undecaheme Cytochrome From S-Layer of Carboxydothermus Ferrireducens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe710
b:38.5
occ:1.00
|
FE
|
A:HEC710
|
0.0
|
38.5
|
1.0
|
NE2
|
A:HIS636
|
1.9
|
56.5
|
1.0
|
NE2
|
A:HIS530
|
2.0
|
50.9
|
1.0
|
NC
|
A:HEC710
|
2.0
|
33.0
|
1.0
|
NA
|
A:HEC710
|
2.0
|
35.0
|
1.0
|
NB
|
A:HEC710
|
2.1
|
31.7
|
1.0
|
ND
|
A:HEC710
|
2.1
|
35.3
|
1.0
|
CE1
|
A:HIS636
|
2.9
|
54.0
|
1.0
|
CE1
|
A:HIS530
|
2.9
|
49.7
|
1.0
|
CD2
|
A:HIS636
|
2.9
|
50.4
|
1.0
|
CD2
|
A:HIS530
|
3.0
|
41.4
|
1.0
|
C1C
|
A:HEC710
|
3.0
|
27.6
|
1.0
|
C1A
|
A:HEC710
|
3.0
|
44.5
|
1.0
|
C4B
|
A:HEC710
|
3.1
|
34.6
|
1.0
|
C4D
|
A:HEC710
|
3.1
|
43.5
|
1.0
|
C4C
|
A:HEC710
|
3.1
|
35.5
|
1.0
|
C4A
|
A:HEC710
|
3.1
|
39.2
|
1.0
|
C1D
|
A:HEC710
|
3.1
|
40.3
|
1.0
|
C1B
|
A:HEC710
|
3.1
|
33.8
|
1.0
|
CHC
|
A:HEC710
|
3.4
|
27.9
|
1.0
|
CHA
|
A:HEC710
|
3.4
|
36.4
|
1.0
|
CHD
|
A:HEC710
|
3.5
|
33.7
|
1.0
|
CHB
|
A:HEC710
|
3.5
|
33.5
|
1.0
|
ND1
|
A:HIS636
|
4.0
|
41.9
|
1.0
|
ND1
|
A:HIS530
|
4.0
|
37.9
|
1.0
|
CG
|
A:HIS636
|
4.0
|
41.8
|
1.0
|
CG
|
A:HIS530
|
4.1
|
40.8
|
1.0
|
C2C
|
A:HEC710
|
4.3
|
36.3
|
1.0
|
C2A
|
A:HEC710
|
4.3
|
48.9
|
1.0
|
C3B
|
A:HEC710
|
4.3
|
36.0
|
1.0
|
C3C
|
A:HEC710
|
4.3
|
36.5
|
1.0
|
C3A
|
A:HEC710
|
4.3
|
41.9
|
1.0
|
C2B
|
A:HEC710
|
4.3
|
34.7
|
1.0
|
C3D
|
A:HEC710
|
4.3
|
42.1
|
1.0
|
C2D
|
A:HEC710
|
4.3
|
41.6
|
1.0
|
CB
|
A:SER632
|
4.9
|
48.1
|
1.0
|
CG2
|
A:VAL540
|
4.9
|
32.6
|
1.0
|
|
Reference:
E.M.Osipov,
N.I.Dergousova,
I.Elizarov,
K.M.Boyko,
T.V.Tikhonova,
S.F.Gavrilov,
E.A.Bonch-Osmolovskaya,
V.O.Popov.
Crystal Structure of Native O-Glycosylated Multiheme Cytochrome Cf with S-Layer Binding Domain Structure.
ISSN: ISSN 0969-2126
Page generated: Wed Aug 7 08:19:20 2024
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