Atomistry » Iron » PDB 6r2o-6rqy » 6ro8
Atomistry »
  Iron »
    PDB 6r2o-6rqy »
      6ro8 »

Iron in PDB 6ro8: The Crystal Structure of Acinetobacter Radioresistens CYP116B5 Heme Domain

Protein crystallography data

The structure of The Crystal Structure of Acinetobacter Radioresistens CYP116B5 Heme Domain, PDB code: 6ro8 was solved by A.Ciaramella, G.Catucci, G.Gilardi, G.Di Nardo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 91.33 / 2.60
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 109.900, 109.900, 164.200, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 24

Iron Binding Sites:

The binding sites of Iron atom in the The Crystal Structure of Acinetobacter Radioresistens CYP116B5 Heme Domain (pdb code 6ro8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the The Crystal Structure of Acinetobacter Radioresistens CYP116B5 Heme Domain, PDB code: 6ro8:

Iron binding site 1 out of 1 in 6ro8

Go back to Iron Binding Sites List in 6ro8
Iron binding site 1 out of 1 in the The Crystal Structure of Acinetobacter Radioresistens CYP116B5 Heme Domain


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Crystal Structure of Acinetobacter Radioresistens CYP116B5 Heme Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe500

b:59.2
occ:1.00
FE A:HEM500 0.0 59.2 1.0
NC A:HEM500 2.0 67.6 1.0
NB A:HEM500 2.0 64.1 1.0
ND A:HEM500 2.1 63.0 1.0
NA A:HEM500 2.1 68.5 1.0
O A:HOH601 2.3 78.7 1.0
SG A:CYS381 2.5 65.1 1.0
C4C A:HEM500 3.0 64.0 1.0
C1D A:HEM500 3.0 61.7 1.0
C1B A:HEM500 3.0 62.7 1.0
C1C A:HEM500 3.1 64.2 1.0
C4B A:HEM500 3.1 63.4 1.0
C4A A:HEM500 3.1 66.5 1.0
C4D A:HEM500 3.1 63.4 1.0
C1A A:HEM500 3.1 59.5 1.0
CB A:CYS381 3.3 61.8 1.0
CHD A:HEM500 3.4 62.8 1.0
CHB A:HEM500 3.4 64.3 1.0
CHC A:HEM500 3.5 58.3 1.0
CHA A:HEM500 3.5 58.4 1.0
O A:HIS501 3.7 90.7 1.0
ND1 A:HIS501 4.0 88.8 1.0
CA A:CYS381 4.1 60.9 1.0
C3C A:HEM500 4.2 70.2 1.0
C2C A:HEM500 4.3 67.5 1.0
C2B A:HEM500 4.3 67.8 1.0
C2D A:HEM500 4.3 64.8 1.0
C3B A:HEM500 4.3 61.5 1.0
C3A A:HEM500 4.3 61.7 1.0
C3D A:HEM500 4.3 67.7 1.0
C2A A:HEM500 4.3 65.6 1.0
C A:HIS501 4.5 68.6 1.0
C A:CYS381 4.7 64.7 1.0
N A:MET382 4.7 68.8 1.0
N A:GLY383 4.8 67.2 1.0
CB A:HIS501 4.8 95.5 1.0
CG A:HIS501 4.8 93.5 1.0
CE1 A:HIS501 4.9 88.2 1.0

Reference:

A.Ciaramella, G.Catucci, G.Gilardi, G.Di Nardo. Crystal Structure of Bacterial CYP116B5 Heme Domain: New Insights on Class VII P450S Structural Flexibility and Peroxygenase Activity. Int.J.Biol.Macromol. V. 140 577 2019.
ISSN: ISSN 0141-8130
PubMed: 31430491
DOI: 10.1016/J.IJBIOMAC.2019.08.141
Page generated: Sun Dec 13 17:02:30 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy