Iron in PDB 6rqf: 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules
Enzymatic activity of 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules
All present enzymatic activity of 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules:
7.1.1.6;
Other elements in 6rqf:
The structure of 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules
(pdb code 6rqf). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules, PDB code: 6rqf:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 6rqf
Go back to
Iron Binding Sites List in 6rqf
Iron binding site 1 out
of 12 in the 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe301
b:29.1
occ:1.00
|
FE
|
I:HEM301
|
0.0
|
29.1
|
1.0
|
NC
|
I:HEM301
|
1.9
|
29.1
|
1.0
|
NB
|
I:HEM301
|
2.0
|
29.1
|
1.0
|
NA
|
I:HEM301
|
2.0
|
29.1
|
1.0
|
ND
|
I:HEM301
|
2.1
|
29.1
|
1.0
|
NE2
|
I:HIS187
|
2.5
|
26.9
|
1.0
|
NE2
|
I:HIS86
|
2.7
|
30.3
|
1.0
|
C1C
|
I:HEM301
|
2.9
|
29.1
|
1.0
|
C4B
|
I:HEM301
|
2.9
|
29.1
|
1.0
|
CE1
|
I:HIS187
|
3.0
|
26.9
|
1.0
|
C4C
|
I:HEM301
|
3.0
|
29.1
|
1.0
|
C1B
|
I:HEM301
|
3.0
|
29.1
|
1.0
|
C1A
|
I:HEM301
|
3.1
|
29.1
|
1.0
|
C4A
|
I:HEM301
|
3.1
|
29.1
|
1.0
|
C1D
|
I:HEM301
|
3.1
|
29.1
|
1.0
|
CE1
|
I:HIS86
|
3.1
|
30.3
|
1.0
|
C4D
|
I:HEM301
|
3.1
|
29.1
|
1.0
|
CHC
|
I:HEM301
|
3.3
|
29.1
|
1.0
|
CHD
|
I:HEM301
|
3.4
|
29.1
|
1.0
|
CHB
|
I:HEM301
|
3.4
|
29.1
|
1.0
|
CHA
|
I:HEM301
|
3.5
|
29.1
|
1.0
|
CD2
|
I:HIS187
|
3.8
|
26.9
|
1.0
|
CD2
|
I:HIS86
|
3.9
|
30.3
|
1.0
|
C2C
|
I:HEM301
|
4.2
|
29.1
|
1.0
|
C3B
|
I:HEM301
|
4.2
|
29.1
|
1.0
|
C3C
|
I:HEM301
|
4.2
|
29.1
|
1.0
|
C2B
|
I:HEM301
|
4.2
|
29.1
|
1.0
|
ND1
|
I:HIS187
|
4.3
|
26.9
|
1.0
|
C2A
|
I:HEM301
|
4.3
|
29.1
|
1.0
|
C3A
|
I:HEM301
|
4.3
|
29.1
|
1.0
|
C2D
|
I:HEM301
|
4.3
|
29.1
|
1.0
|
ND1
|
I:HIS86
|
4.3
|
30.3
|
1.0
|
C3D
|
I:HEM301
|
4.3
|
29.1
|
1.0
|
CG
|
I:HIS187
|
4.7
|
26.9
|
1.0
|
CG
|
I:HIS86
|
4.8
|
30.3
|
1.0
|
|
Iron binding site 2 out
of 12 in 6rqf
Go back to
Iron Binding Sites List in 6rqf
Iron binding site 2 out
of 12 in the 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe302
b:35.8
occ:1.00
|
FE
|
I:HEM302
|
0.0
|
35.8
|
1.0
|
NB
|
I:HEM302
|
2.0
|
35.8
|
1.0
|
NC
|
I:HEM302
|
2.0
|
35.8
|
1.0
|
NA
|
I:HEM302
|
2.0
|
35.8
|
1.0
|
ND
|
I:HEM302
|
2.0
|
35.8
|
1.0
|
NE2
|
I:HIS202
|
2.7
|
33.2
|
1.0
|
NE2
|
I:HIS100
|
2.8
|
32.2
|
1.0
|
C4B
|
I:HEM302
|
3.0
|
35.8
|
1.0
|
C1C
|
I:HEM302
|
3.0
|
35.8
|
1.0
|
C1B
|
I:HEM302
|
3.0
|
35.8
|
1.0
|
C4A
|
I:HEM302
|
3.0
|
35.8
|
1.0
|
C4D
|
I:HEM302
|
3.0
|
35.8
|
1.0
|
C1A
|
I:HEM302
|
3.1
|
35.8
|
1.0
|
C1D
|
I:HEM302
|
3.1
|
35.8
|
1.0
|
C4C
|
I:HEM302
|
3.1
|
35.8
|
1.0
|
CD2
|
I:HIS100
|
3.1
|
32.2
|
1.0
|
CHC
|
I:HEM302
|
3.3
|
35.8
|
1.0
|
CHB
|
I:HEM302
|
3.4
|
35.8
|
1.0
|
CD2
|
I:HIS202
|
3.4
|
33.2
|
1.0
|
CHA
|
I:HEM302
|
3.4
|
35.8
|
1.0
|
CHD
|
I:HEM302
|
3.5
|
35.8
|
1.0
|
CE1
|
I:HIS202
|
3.7
|
33.2
|
1.0
|
CE1
|
I:HIS100
|
4.0
|
32.2
|
1.0
|
C3B
|
I:HEM302
|
4.2
|
35.8
|
1.0
|
C2B
|
I:HEM302
|
4.2
|
35.8
|
1.0
|
C2C
|
I:HEM302
|
4.2
|
35.8
|
1.0
|
C3A
|
I:HEM302
|
4.2
|
35.8
|
1.0
|
C3C
|
I:HEM302
|
4.2
|
35.8
|
1.0
|
C3D
|
I:HEM302
|
4.2
|
35.8
|
1.0
|
C2A
|
I:HEM302
|
4.3
|
35.8
|
1.0
|
C2D
|
I:HEM302
|
4.3
|
35.8
|
1.0
|
CG
|
I:HIS100
|
4.4
|
32.2
|
1.0
|
CG
|
I:HIS202
|
4.6
|
33.2
|
1.0
|
ND1
|
I:HIS202
|
4.6
|
33.2
|
1.0
|
ND1
|
I:HIS100
|
4.8
|
32.2
|
1.0
|
|
Iron binding site 3 out
of 12 in 6rqf
Go back to
Iron Binding Sites List in 6rqf
Iron binding site 3 out
of 12 in the 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe303
b:43.0
occ:1.00
|
FE
|
I:HEC303
|
0.0
|
43.0
|
1.0
|
NB
|
I:HEC303
|
2.0
|
43.0
|
1.0
|
ND
|
I:HEC303
|
2.0
|
43.0
|
1.0
|
NA
|
I:HEC303
|
2.0
|
43.0
|
1.0
|
NC
|
I:HEC303
|
2.0
|
43.0
|
1.0
|
C1A
|
I:HEC303
|
3.0
|
43.0
|
1.0
|
C1C
|
I:HEC303
|
3.0
|
43.0
|
1.0
|
C4B
|
I:HEC303
|
3.0
|
43.0
|
1.0
|
C4D
|
I:HEC303
|
3.0
|
43.0
|
1.0
|
C4A
|
I:HEC303
|
3.0
|
43.0
|
1.0
|
C1D
|
I:HEC303
|
3.1
|
43.0
|
1.0
|
C1B
|
I:HEC303
|
3.1
|
43.0
|
1.0
|
C4C
|
I:HEC303
|
3.1
|
43.0
|
1.0
|
CHA
|
I:HEC303
|
3.3
|
43.0
|
1.0
|
CHC
|
I:HEC303
|
3.3
|
43.0
|
1.0
|
CHB
|
I:HEC303
|
3.4
|
43.0
|
1.0
|
CHD
|
I:HEC303
|
3.5
|
43.0
|
1.0
|
CZ
|
J:PHE40
|
4.0
|
45.7
|
1.0
|
C2A
|
I:HEC303
|
4.2
|
43.0
|
1.0
|
C3A
|
I:HEC303
|
4.2
|
43.0
|
1.0
|
C2C
|
I:HEC303
|
4.2
|
43.0
|
1.0
|
C3D
|
I:HEC303
|
4.2
|
43.0
|
1.0
|
C3B
|
I:HEC303
|
4.2
|
43.0
|
1.0
|
C2D
|
I:HEC303
|
4.2
|
43.0
|
1.0
|
C2B
|
I:HEC303
|
4.3
|
43.0
|
1.0
|
C3C
|
I:HEC303
|
4.3
|
43.0
|
1.0
|
O2A
|
I:HEM302
|
4.4
|
35.8
|
1.0
|
CE1
|
J:PHE40
|
4.6
|
45.7
|
1.0
|
CMA
|
I:HEM302
|
4.6
|
35.8
|
1.0
|
CE2
|
J:PHE40
|
4.7
|
45.7
|
1.0
|
O
|
I:TYR34
|
4.9
|
37.0
|
1.0
|
CA
|
I:GLY38
|
4.9
|
33.2
|
1.0
|
|
Iron binding site 4 out
of 12 in 6rqf
Go back to
Iron Binding Sites List in 6rqf
Iron binding site 4 out
of 12 in the 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Fe301
b:70.0
occ:1.00
|
FE
|
K:HEC301
|
0.0
|
70.0
|
1.0
|
NB
|
K:HEC301
|
2.0
|
70.0
|
1.0
|
NC
|
K:HEC301
|
2.0
|
70.0
|
1.0
|
ND
|
K:HEC301
|
2.0
|
70.0
|
1.0
|
NA
|
K:HEC301
|
2.0
|
70.0
|
1.0
|
N
|
K:TYR1
|
2.6
|
69.8
|
1.0
|
NE2
|
K:HIS25
|
2.8
|
68.3
|
1.0
|
C4B
|
K:HEC301
|
3.0
|
70.0
|
1.0
|
C1B
|
K:HEC301
|
3.0
|
70.0
|
1.0
|
C1D
|
K:HEC301
|
3.0
|
70.0
|
1.0
|
C1C
|
K:HEC301
|
3.0
|
70.0
|
1.0
|
C4C
|
K:HEC301
|
3.0
|
70.0
|
1.0
|
C4D
|
K:HEC301
|
3.0
|
70.0
|
1.0
|
C4A
|
K:HEC301
|
3.0
|
70.0
|
1.0
|
C1A
|
K:HEC301
|
3.1
|
70.0
|
1.0
|
CHB
|
K:HEC301
|
3.4
|
70.0
|
1.0
|
CHC
|
K:HEC301
|
3.4
|
70.0
|
1.0
|
CHD
|
K:HEC301
|
3.4
|
70.0
|
1.0
|
CHA
|
K:HEC301
|
3.4
|
70.0
|
1.0
|
CE1
|
K:HIS25
|
3.6
|
68.3
|
1.0
|
CA
|
K:TYR1
|
3.7
|
69.8
|
1.0
|
O
|
K:TYR1
|
3.8
|
69.8
|
1.0
|
CD2
|
K:HIS25
|
3.9
|
68.3
|
1.0
|
C
|
K:TYR1
|
4.0
|
69.8
|
1.0
|
C3B
|
K:HEC301
|
4.1
|
70.0
|
1.0
|
C2B
|
K:HEC301
|
4.2
|
70.0
|
1.0
|
C2D
|
K:HEC301
|
4.2
|
70.0
|
1.0
|
C3D
|
K:HEC301
|
4.2
|
70.0
|
1.0
|
C2C
|
K:HEC301
|
4.3
|
70.0
|
1.0
|
C3C
|
K:HEC301
|
4.3
|
70.0
|
1.0
|
C3A
|
K:HEC301
|
4.3
|
70.0
|
1.0
|
C2A
|
K:HEC301
|
4.3
|
70.0
|
1.0
|
ND1
|
K:HIS25
|
4.8
|
68.3
|
1.0
|
CD2
|
K:PHE4
|
4.9
|
67.0
|
1.0
|
N
|
K:PRO2
|
4.9
|
67.2
|
1.0
|
CG
|
K:HIS25
|
5.0
|
68.3
|
1.0
|
|
Iron binding site 5 out
of 12 in 6rqf
Go back to
Iron Binding Sites List in 6rqf
Iron binding site 5 out
of 12 in the 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Fe201
b:86.7
occ:1.00
|
FE1
|
L:FES201
|
0.0
|
86.7
|
1.0
|
SG
|
L:CYS107
|
2.1
|
75.6
|
1.0
|
SG
|
L:CYS125
|
2.1
|
66.6
|
1.0
|
S1
|
L:FES201
|
2.2
|
86.7
|
1.0
|
S2
|
L:FES201
|
2.2
|
86.7
|
1.0
|
CB
|
L:CYS107
|
3.0
|
75.6
|
1.0
|
FE2
|
L:FES201
|
3.1
|
86.7
|
1.0
|
CB
|
L:CYS125
|
3.2
|
66.6
|
1.0
|
CB
|
L:CYS127
|
4.1
|
70.6
|
1.0
|
SG
|
L:CYS112
|
4.2
|
68.7
|
1.0
|
CB
|
L:CYS112
|
4.2
|
68.7
|
1.0
|
CB
|
L:HIS109
|
4.4
|
71.5
|
1.0
|
CA
|
L:CYS107
|
4.5
|
75.6
|
1.0
|
N
|
L:HIS128
|
4.5
|
71.6
|
1.0
|
OG
|
L:SER130
|
4.5
|
73.7
|
1.0
|
ND1
|
L:HIS128
|
4.6
|
71.6
|
1.0
|
CA
|
L:CYS125
|
4.6
|
66.6
|
1.0
|
ND1
|
L:HIS109
|
4.6
|
71.5
|
1.0
|
CB
|
L:SER130
|
4.7
|
73.7
|
1.0
|
CG1
|
L:VAL114
|
4.8
|
66.5
|
1.0
|
N
|
L:CYS127
|
4.8
|
70.6
|
1.0
|
CB
|
L:HIS128
|
4.9
|
71.6
|
1.0
|
SG
|
L:CYS127
|
4.9
|
70.6
|
1.0
|
N
|
L:CYS112
|
4.9
|
68.7
|
1.0
|
CA
|
L:CYS127
|
4.9
|
70.6
|
1.0
|
C
|
L:CYS125
|
5.0
|
66.6
|
1.0
|
CG
|
L:HIS109
|
5.0
|
71.5
|
1.0
|
|
Iron binding site 6 out
of 12 in 6rqf
Go back to
Iron Binding Sites List in 6rqf
Iron binding site 6 out
of 12 in the 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Fe201
b:86.7
occ:1.00
|
FE2
|
L:FES201
|
0.0
|
86.7
|
1.0
|
ND1
|
L:HIS128
|
1.6
|
71.6
|
1.0
|
ND1
|
L:HIS109
|
2.2
|
71.5
|
1.0
|
S2
|
L:FES201
|
2.2
|
86.7
|
1.0
|
S1
|
L:FES201
|
2.2
|
86.7
|
1.0
|
CE1
|
L:HIS128
|
2.5
|
71.6
|
1.0
|
CG
|
L:HIS128
|
2.6
|
71.6
|
1.0
|
CE1
|
L:HIS109
|
3.0
|
71.5
|
1.0
|
FE1
|
L:FES201
|
3.1
|
86.7
|
1.0
|
CB
|
L:HIS128
|
3.1
|
71.6
|
1.0
|
CG
|
L:HIS109
|
3.3
|
71.5
|
1.0
|
NE2
|
L:HIS128
|
3.5
|
71.6
|
1.0
|
CD2
|
L:HIS128
|
3.6
|
71.6
|
1.0
|
N
|
L:HIS128
|
3.7
|
71.6
|
1.0
|
CB
|
L:HIS109
|
3.7
|
71.5
|
1.0
|
CB
|
L:CYS127
|
3.8
|
70.6
|
1.0
|
CA
|
L:HIS128
|
4.0
|
71.6
|
1.0
|
NE2
|
L:HIS109
|
4.2
|
71.5
|
1.0
|
C
|
L:CYS127
|
4.3
|
70.6
|
1.0
|
CD2
|
L:HIS109
|
4.3
|
71.5
|
1.0
|
SG
|
L:CYS107
|
4.3
|
75.6
|
1.0
|
CB
|
L:LEU110
|
4.4
|
63.9
|
1.0
|
SG
|
L:CYS125
|
4.6
|
66.6
|
1.0
|
SG
|
L:CYS112
|
4.6
|
68.7
|
1.0
|
N
|
L:LEU110
|
4.7
|
63.9
|
1.0
|
CA
|
L:CYS127
|
4.7
|
70.6
|
1.0
|
CG
|
L:LEU110
|
4.7
|
63.9
|
1.0
|
C
|
L:HIS109
|
4.8
|
71.5
|
1.0
|
CA
|
L:HIS109
|
4.9
|
71.5
|
1.0
|
CD1
|
L:LEU110
|
4.9
|
63.9
|
1.0
|
|
Iron binding site 7 out
of 12 in 6rqf
Go back to
Iron Binding Sites List in 6rqf
Iron binding site 7 out
of 12 in the 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe301
b:29.3
occ:1.00
|
FE
|
A:HEM301
|
0.0
|
29.3
|
1.0
|
NC
|
A:HEM301
|
1.9
|
29.3
|
1.0
|
NB
|
A:HEM301
|
2.0
|
29.3
|
1.0
|
ND
|
A:HEM301
|
2.1
|
29.3
|
1.0
|
NA
|
A:HEM301
|
2.1
|
29.3
|
1.0
|
NE2
|
A:HIS86
|
2.7
|
29.4
|
1.0
|
NE2
|
A:HIS187
|
2.7
|
26.7
|
1.0
|
C1C
|
A:HEM301
|
2.9
|
29.3
|
1.0
|
C4C
|
A:HEM301
|
3.0
|
29.3
|
1.0
|
C4B
|
A:HEM301
|
3.0
|
29.3
|
1.0
|
CE1
|
A:HIS86
|
3.0
|
29.4
|
1.0
|
C1B
|
A:HEM301
|
3.0
|
29.3
|
1.0
|
C1D
|
A:HEM301
|
3.0
|
29.3
|
1.0
|
CE1
|
A:HIS187
|
3.0
|
26.7
|
1.0
|
C4A
|
A:HEM301
|
3.1
|
29.3
|
1.0
|
C1A
|
A:HEM301
|
3.1
|
29.3
|
1.0
|
C4D
|
A:HEM301
|
3.1
|
29.3
|
1.0
|
CHC
|
A:HEM301
|
3.3
|
29.3
|
1.0
|
CHD
|
A:HEM301
|
3.4
|
29.3
|
1.0
|
CHB
|
A:HEM301
|
3.5
|
29.3
|
1.0
|
CHA
|
A:HEM301
|
3.5
|
29.3
|
1.0
|
CD2
|
A:HIS187
|
3.9
|
26.7
|
1.0
|
CD2
|
A:HIS86
|
4.0
|
29.4
|
1.0
|
C2C
|
A:HEM301
|
4.1
|
29.3
|
1.0
|
C3C
|
A:HEM301
|
4.1
|
29.3
|
1.0
|
C3B
|
A:HEM301
|
4.2
|
29.3
|
1.0
|
C2B
|
A:HEM301
|
4.2
|
29.3
|
1.0
|
C2D
|
A:HEM301
|
4.3
|
29.3
|
1.0
|
ND1
|
A:HIS86
|
4.3
|
29.4
|
1.0
|
C3D
|
A:HEM301
|
4.3
|
29.3
|
1.0
|
ND1
|
A:HIS187
|
4.3
|
26.7
|
1.0
|
C2A
|
A:HEM301
|
4.3
|
29.3
|
1.0
|
C3A
|
A:HEM301
|
4.3
|
29.3
|
1.0
|
CG
|
A:HIS187
|
4.8
|
26.7
|
1.0
|
CG
|
A:HIS86
|
4.8
|
29.4
|
1.0
|
OE1
|
A:GLN47
|
4.8
|
27.2
|
1.0
|
|
Iron binding site 8 out
of 12 in 6rqf
Go back to
Iron Binding Sites List in 6rqf
Iron binding site 8 out
of 12 in the 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe302
b:33.8
occ:1.00
|
FE
|
A:HEM302
|
0.0
|
33.8
|
1.0
|
NC
|
A:HEM302
|
2.0
|
33.8
|
1.0
|
NB
|
A:HEM302
|
2.0
|
33.8
|
1.0
|
NA
|
A:HEM302
|
2.0
|
33.8
|
1.0
|
ND
|
A:HEM302
|
2.0
|
33.8
|
1.0
|
NE2
|
A:HIS100
|
2.7
|
29.8
|
1.0
|
NE2
|
A:HIS202
|
2.7
|
30.7
|
1.0
|
C1C
|
A:HEM302
|
2.9
|
33.8
|
1.0
|
C1B
|
A:HEM302
|
3.0
|
33.8
|
1.0
|
C4B
|
A:HEM302
|
3.0
|
33.8
|
1.0
|
C4C
|
A:HEM302
|
3.0
|
33.8
|
1.0
|
CD2
|
A:HIS100
|
3.0
|
29.8
|
1.0
|
C4A
|
A:HEM302
|
3.0
|
33.8
|
1.0
|
C4D
|
A:HEM302
|
3.0
|
33.8
|
1.0
|
C1A
|
A:HEM302
|
3.0
|
33.8
|
1.0
|
C1D
|
A:HEM302
|
3.1
|
33.8
|
1.0
|
CHC
|
A:HEM302
|
3.3
|
33.8
|
1.0
|
CHB
|
A:HEM302
|
3.4
|
33.8
|
1.0
|
CHA
|
A:HEM302
|
3.4
|
33.8
|
1.0
|
CHD
|
A:HEM302
|
3.4
|
33.8
|
1.0
|
CD2
|
A:HIS202
|
3.6
|
30.7
|
1.0
|
CE1
|
A:HIS202
|
3.6
|
30.7
|
1.0
|
CE1
|
A:HIS100
|
3.9
|
29.8
|
1.0
|
C2B
|
A:HEM302
|
4.2
|
33.8
|
1.0
|
C2C
|
A:HEM302
|
4.2
|
33.8
|
1.0
|
C3B
|
A:HEM302
|
4.2
|
33.8
|
1.0
|
C3C
|
A:HEM302
|
4.2
|
33.8
|
1.0
|
C3D
|
A:HEM302
|
4.2
|
33.8
|
1.0
|
C3A
|
A:HEM302
|
4.2
|
33.8
|
1.0
|
C2D
|
A:HEM302
|
4.2
|
33.8
|
1.0
|
C2A
|
A:HEM302
|
4.3
|
33.8
|
1.0
|
CG
|
A:HIS100
|
4.3
|
29.8
|
1.0
|
ND1
|
A:HIS202
|
4.7
|
30.7
|
1.0
|
CG
|
A:HIS202
|
4.7
|
30.7
|
1.0
|
ND1
|
A:HIS100
|
4.7
|
29.8
|
1.0
|
|
Iron binding site 9 out
of 12 in 6rqf
Go back to
Iron Binding Sites List in 6rqf
Iron binding site 9 out
of 12 in the 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe303
b:41.8
occ:1.00
|
FE
|
A:HEC303
|
0.0
|
41.8
|
1.0
|
NB
|
A:HEC303
|
2.0
|
41.8
|
1.0
|
ND
|
A:HEC303
|
2.0
|
41.8
|
1.0
|
NC
|
A:HEC303
|
2.0
|
41.8
|
1.0
|
NA
|
A:HEC303
|
2.0
|
41.8
|
1.0
|
C4B
|
A:HEC303
|
3.0
|
41.8
|
1.0
|
C4D
|
A:HEC303
|
3.0
|
41.8
|
1.0
|
C1C
|
A:HEC303
|
3.0
|
41.8
|
1.0
|
C1A
|
A:HEC303
|
3.0
|
41.8
|
1.0
|
C1D
|
A:HEC303
|
3.1
|
41.8
|
1.0
|
C1B
|
A:HEC303
|
3.1
|
41.8
|
1.0
|
C4A
|
A:HEC303
|
3.1
|
41.8
|
1.0
|
C4C
|
A:HEC303
|
3.1
|
41.8
|
1.0
|
CHC
|
A:HEC303
|
3.3
|
41.8
|
1.0
|
CHA
|
A:HEC303
|
3.3
|
41.8
|
1.0
|
CHD
|
A:HEC303
|
3.5
|
41.8
|
1.0
|
CHB
|
A:HEC303
|
3.5
|
41.8
|
1.0
|
O1A
|
A:HEM302
|
3.6
|
33.8
|
1.0
|
CMA
|
A:HEM302
|
4.1
|
33.8
|
1.0
|
C3D
|
A:HEC303
|
4.2
|
41.8
|
1.0
|
C3B
|
A:HEC303
|
4.2
|
41.8
|
1.0
|
C2A
|
A:HEC303
|
4.2
|
41.8
|
1.0
|
C2C
|
A:HEC303
|
4.2
|
41.8
|
1.0
|
C2D
|
A:HEC303
|
4.2
|
41.8
|
1.0
|
CZ
|
B:PHE40
|
4.2
|
44.8
|
1.0
|
C2B
|
A:HEC303
|
4.2
|
41.8
|
1.0
|
C3A
|
A:HEC303
|
4.3
|
41.8
|
1.0
|
C3C
|
A:HEC303
|
4.3
|
41.8
|
1.0
|
CA
|
A:GLY38
|
4.5
|
31.1
|
1.0
|
CGA
|
A:HEM302
|
4.6
|
33.8
|
1.0
|
O
|
A:TYR34
|
4.7
|
36.6
|
1.0
|
CAA
|
A:HEM302
|
4.7
|
33.8
|
1.0
|
CE2
|
B:PHE40
|
4.8
|
44.8
|
1.0
|
N
|
A:GLY38
|
4.8
|
31.1
|
1.0
|
CBA
|
A:HEM302
|
4.9
|
33.8
|
1.0
|
|
Iron binding site 10 out
of 12 in 6rqf
Go back to
Iron Binding Sites List in 6rqf
Iron binding site 10 out
of 12 in the 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of 3.6 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Spinacia Oleracea with Natively Bound Thylakoid Lipids and Plastoquinone Molecules within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe301
b:20.0
occ:1.00
|
FE
|
C:HEC301
|
0.0
|
20.0
|
1.0
|
ND
|
C:HEC301
|
1.9
|
20.0
|
1.0
|
NA
|
C:HEC301
|
2.0
|
20.0
|
1.0
|
NC
|
C:HEC301
|
2.1
|
20.0
|
1.0
|
NB
|
C:HEC301
|
2.1
|
20.0
|
1.0
|
N
|
C:TYR1
|
2.5
|
67.0
|
1.0
|
NE2
|
C:HIS25
|
2.6
|
66.2
|
1.0
|
C4D
|
C:HEC301
|
2.9
|
20.0
|
1.0
|
C1D
|
C:HEC301
|
2.9
|
20.0
|
1.0
|
C1A
|
C:HEC301
|
2.9
|
20.0
|
1.0
|
C4C
|
C:HEC301
|
3.0
|
20.0
|
1.0
|
C4A
|
C:HEC301
|
3.0
|
20.0
|
1.0
|
C1B
|
C:HEC301
|
3.1
|
20.0
|
1.0
|
C4B
|
C:HEC301
|
3.1
|
20.0
|
1.0
|
C1C
|
C:HEC301
|
3.1
|
20.0
|
1.0
|
CHA
|
C:HEC301
|
3.3
|
20.0
|
1.0
|
CHD
|
C:HEC301
|
3.4
|
20.0
|
1.0
|
CE1
|
C:HIS25
|
3.4
|
66.2
|
1.0
|
CHB
|
C:HEC301
|
3.5
|
20.0
|
1.0
|
CA
|
C:TYR1
|
3.5
|
67.0
|
1.0
|
CHC
|
C:HEC301
|
3.5
|
20.0
|
1.0
|
CD2
|
C:HIS25
|
3.7
|
66.2
|
1.0
|
C
|
C:TYR1
|
4.1
|
67.0
|
1.0
|
C3D
|
C:HEC301
|
4.1
|
20.0
|
1.0
|
C2D
|
C:HEC301
|
4.1
|
20.0
|
1.0
|
O
|
C:TYR1
|
4.1
|
67.0
|
1.0
|
C2A
|
C:HEC301
|
4.2
|
20.0
|
1.0
|
C3A
|
C:HEC301
|
4.2
|
20.0
|
1.0
|
C3C
|
C:HEC301
|
4.3
|
20.0
|
1.0
|
C2C
|
C:HEC301
|
4.3
|
20.0
|
1.0
|
C2B
|
C:HEC301
|
4.3
|
20.0
|
1.0
|
C3B
|
C:HEC301
|
4.3
|
20.0
|
1.0
|
ND1
|
C:HIS25
|
4.6
|
66.2
|
1.0
|
ND2
|
C:ASN153
|
4.7
|
63.5
|
1.0
|
CD2
|
C:PHE4
|
4.7
|
64.6
|
1.0
|
CB
|
C:TYR1
|
4.8
|
67.0
|
1.0
|
CG
|
C:HIS25
|
4.8
|
66.2
|
1.0
|
N
|
C:PRO2
|
5.0
|
63.7
|
1.0
|
CG
|
C:TYR1
|
5.0
|
67.0
|
1.0
|
|
Reference:
L.A.Malone,
P.Qian,
G.E.Mayneord,
A.Hitchcock,
D.A.Farmer,
R.F.Thompson,
D.J.K.Swainsbury,
N.A.Ranson,
C.N.Hunter,
M.P.Johnson.
Cryo-Em Structure of the Spinach Cytochrome B6F Complex at 3.6 Angstrom Resolution. Nature V. 575 535 2019.
ISSN: ESSN 1476-4687
PubMed: 31723268
DOI: 10.1038/S41586-019-1746-6
Page generated: Wed Aug 7 09:04:57 2024
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