Iron in PDB 6s6t: Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State

All present enzymatic activity of Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State:
1.4.1.13;

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 36;

Binding sites:

The binding sites of Iron atom in the Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State (pdb code 6s6t). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 36 binding sites of Iron where determined in the Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State, PDB code: 6s6t:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 36 in the Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1502 b:62.5 occ:1.00 FE1 A:F3S1502 0.0 62.5 1.0 S1 A:F3S1502 2.2 62.5 1.0 SG A:CYS1113 2.3 48.7 1.0 S2 A:F3S1502 2.3 62.5 1.0 S3 A:F3S1502 2.3 62.5 1.0 FE3 A:F3S1502 2.7 62.5 1.0 FE4 A:F3S1502 2.7 62.5 1.0 SG A:CYS1102 3.3 46.0 1.0 CB A:CYS1113 3.3 48.7 1.0 N A:CYS1118 3.7 49.7 1.0 SG A:CYS1108 3.9 55.9 1.0 CB A:CYS1118 3.9 49.7 1.0 S4 A:F3S1502 4.0 62.5 1.0 CB A:VAL1117 4.0 46.3 1.0 CA A:CYS1118 4.4 49.7 1.0 CB A:CYS1102 4.5 46.0 1.0 CG1 A:VAL1117 4.5 46.3 1.0 N A:VAL1117 4.6 46.3 1.0 CA A:VAL1117 4.6 46.3 1.0 C A:VAL1117 4.6 46.3 1.0 SG A:CYS1118 4.6 49.7 1.0 CA A:CYS1113 4.7 48.7 1.0 CG2 A:VAL1117 4.9 46.3 1.0 O A:CYS1118 5.0 49.7 1.0 CA A:CYS1102 5.0 46.0 1.0

Iron binding site 2 out of 36 in the Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1502 b:62.5 occ:1.00 FE3 A:F3S1502 0.0 62.5 1.0 S1 A:F3S1502 2.2 62.5 1.0 SG A:CYS1102 2.3 46.0 1.0 S4 A:F3S1502 2.3 62.5 1.0 S3 A:F3S1502 2.3 62.5 1.0 FE1 A:F3S1502 2.7 62.5 1.0 FE4 A:F3S1502 2.7 62.5 1.0 SG A:CYS1113 3.2 48.7 1.0 CB A:CYS1102 3.7 46.0 1.0 N A:ILE1103 3.7 46.8 1.0 N A:MET1104 3.7 48.7 1.0 N A:VAL1105 3.7 48.9 1.0 CA A:CYS1102 3.8 46.0 1.0 S2 A:F3S1502 3.9 62.5 1.0 C A:CYS1102 4.1 46.0 1.0 CA A:MET1104 4.3 48.7 1.0 CB A:VAL1105 4.4 48.9 1.0 CG2 A:VAL1105 4.4 48.9 1.0 C A:ILE1103 4.5 46.8 1.0 C A:MET1104 4.5 48.7 1.0 CA A:VAL1105 4.6 48.9 1.0 CA A:ILE1103 4.7 46.8 1.0 N A:ARG1106 4.8 47.5 1.0 SG A:CYS1108 4.9 55.9 1.0 CB A:CYS1113 4.9 48.7 1.0 CG2 A:ILE1103 5.0 46.8 1.0

Iron binding site 3 out of 36 in the Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1502 b:62.5 occ:1.00 FE4 A:F3S1502 0.0 62.5 1.0 S4 A:F3S1502 2.3 62.5 1.0 S2 A:F3S1502 2.3 62.5 1.0 SG A:CYS1108 2.3 55.9 1.0 S3 A:F3S1502 2.3 62.5 1.0 FE1 A:F3S1502 2.7 62.5 1.0 FE3 A:F3S1502 2.7 62.5 1.0 SG A:CYS1102 3.1 46.0 1.0 CE A:MET479 3.2 54.4 1.0 S1 A:F3S1502 3.8 62.5 1.0 CB A:CYS1108 4.1 55.9 1.0 SG A:CYS1113 4.2 48.7 1.0 N A:ARG1106 4.5 47.5 1.0 N A:CYS1108 4.7 55.9 1.0 CA A:CYS1108 4.8 55.9 1.0 SD A:MET479 4.9 54.4 1.0 CB A:CYS1102 4.9 46.0 1.0 N A:GLN1107 4.9 49.2 1.0 CB A:CYS1118 4.9 49.7 1.0 CA A:ARG1106 4.9 47.5 1.0 N A:VAL1105 5.0 48.9 1.0

Iron binding site 4 out of 36 in the Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1502 b:0.4 occ:1.00 FE1 B:F3S1502 0.0 0.4 1.0 S1 B:F3S1502 2.2 0.4 1.0 S2 B:F3S1502 2.3 0.4 1.0 SG B:CYS1113 2.3 0.8 1.0 S3 B:F3S1502 2.3 0.4 1.0 FE4 B:F3S1502 2.7 0.4 1.0 FE3 B:F3S1502 2.7 0.4 1.0 CB B:CYS1113 3.1 0.8 1.0 SG B:CYS1108 3.3 0.4 1.0 CA B:CYS1113 3.5 0.8 1.0 S4 B:F3S1502 3.9 0.4 1.0 CD B:PRO1114 4.2 0.9 1.0 C B:CYS1113 4.5 0.8 1.0 CB B:VAL1105 4.5 0.4 1.0 CB B:CYS1108 4.5 0.4 1.0 CA B:CYS1108 4.5 0.4 1.0 N B:CYS1108 4.6 0.4 1.0 N B:PRO1114 4.6 0.9 1.0 N B:CYS1113 4.6 0.8 1.0 SG B:CYS1102 4.7 0.5 1.0 CG2 B:VAL1105 4.9 0.4 1.0 N B:VAL1105 4.9 0.4 1.0 C B:GLN1107 5.0 0.1 1.0

Iron binding site 5 out of 36 in the Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1502 b:0.4 occ:1.00 FE3 B:F3S1502 0.0 0.4 1.0 S1 B:F3S1502 2.2 0.4 1.0 S4 B:F3S1502 2.3 0.4 1.0 SG B:CYS1102 2.3 0.5 1.0 S3 B:F3S1502 2.3 0.4 1.0 FE4 B:F3S1502 2.7 0.4 1.0 FE1 B:F3S1502 2.7 0.4 1.0 SG B:CYS1113 3.0 0.8 1.0 CB B:CYS1102 3.2 0.5 1.0 CA B:CYS1102 3.6 0.5 1.0 S2 B:F3S1502 4.0 0.4 1.0 CG1 B:VAL1115 4.0 0.4 1.0 N B:ILE1103 4.0 0.4 1.0 C B:CYS1102 4.2 0.5 1.0 N B:MET1104 4.5 0.6 1.0 SG B:CYS1108 4.7 0.4 1.0 CB B:VAL1117 4.7 0.2 1.0 CB B:CYS1113 4.7 0.8 1.0 N B:CYS1102 4.8 0.5 1.0

Iron binding site 6 out of 36 in the Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1502 b:0.4 occ:1.00 FE4 B:F3S1502 0.0 0.4 1.0 S4 B:F3S1502 2.3 0.4 1.0 S2 B:F3S1502 2.3 0.4 1.0 SG B:CYS1108 2.3 0.4 1.0 S3 B:F3S1502 2.3 0.4 1.0 FE1 B:F3S1502 2.7 0.4 1.0 FE3 B:F3S1502 2.7 0.4 1.0 SG B:CYS1102 3.5 0.5 1.0 S1 B:F3S1502 3.8 0.4 1.0 CB B:CYS1108 4.1 0.4 1.0 SG B:CYS1113 4.3 0.8 1.0 CE B:MET479 4.5 0.2 1.0 N B:ARG1106 4.7 0.6 1.0 CA B:CYS1108 4.9 0.4 1.0 N B:CYS1108 4.9 0.4 1.0

Iron binding site 7 out of 36 in the Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe1502 b:56.1 occ:1.00 FE1 C:F3S1502 0.0 56.1 1.0 S1 C:F3S1502 2.2 56.1 1.0 SG C:CYS1113 2.3 48.9 1.0 S2 C:F3S1502 2.3 56.1 1.0 S3 C:F3S1502 2.3 56.1 1.0 FE4 C:F3S1502 2.7 56.1 1.0 FE3 C:F3S1502 2.7 56.1 1.0 CB C:CYS1113 3.0 48.9 1.0 CB C:CYS1118 3.6 50.2 1.0 N C:CYS1118 3.6 50.2 1.0 S4 C:F3S1502 3.9 56.1 1.0 CA C:CYS1118 4.1 50.2 1.0 CA C:CYS1113 4.2 48.9 1.0 SG C:CYS1108 4.3 53.1 1.0 O C:CYS1118 4.4 50.2 1.0 CB C:VAL1117 4.5 45.1 1.0 SG C:CYS1118 4.5 50.2 1.0 C C:CYS1118 4.6 50.2 1.0 N C:VAL1117 4.6 45.1 1.0 SG C:CYS1102 4.7 42.7 1.0 C C:VAL1117 4.7 45.1 1.0 CA C:VAL1117 4.8 45.1 1.0 CG1 C:VAL1115 4.9 44.9 1.0 C C:CYS1113 5.0 48.9 1.0 CD C:PRO1114 5.0 47.1 1.0

Iron binding site 8 out of 36 in the Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe1502 b:56.1 occ:1.00 FE3 C:F3S1502 0.0 56.1 1.0 S1 C:F3S1502 2.2 56.1 1.0 S4 C:F3S1502 2.3 56.1 1.0 SG C:CYS1102 2.3 42.7 1.0 S3 C:F3S1502 2.3 56.1 1.0 FE1 C:F3S1502 2.7 56.1 1.0 FE4 C:F3S1502 2.7 56.1 1.0 CB C:CYS1102 3.7 42.7 1.0 S2 C:F3S1502 3.9 56.1 1.0 N C:MET1104 4.0 48.9 1.0 N C:ILE1103 4.0 43.4 1.0 N C:VAL1105 4.1 48.4 1.0 CA C:CYS1102 4.2 42.7 1.0 SG C:CYS1113 4.2 48.9 1.0 CA C:MET1104 4.4 48.9 1.0 C C:CYS1102 4.6 42.7 1.0 CG2 C:VAL1105 4.6 48.4 1.0 C C:MET1104 4.8 48.9 1.0 CB C:VAL1105 4.8 48.4 1.0 CE C:MET479 4.8 55.2 1.0 C C:ILE1103 4.9 43.4 1.0 SG C:CYS1108 4.9 53.1 1.0 N C:ARG1106 4.9 49.5 1.0 CA C:VAL1105 5.0 48.4 1.0

Iron binding site 9 out of 36 in the Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe1502 b:56.1 occ:1.00 FE4 C:F3S1502 0.0 56.1 1.0 S4 C:F3S1502 2.3 56.1 1.0 S2 C:F3S1502 2.3 56.1 1.0 SG C:CYS1108 2.3 53.1 1.0 S3 C:F3S1502 2.3 56.1 1.0 FE1 C:F3S1502 2.7 56.1 1.0 FE3 C:F3S1502 2.7 56.1 1.0 CE C:MET479 3.7 55.2 1.0 S1 C:F3S1502 3.8 56.1 1.0 CB C:CYS1108 3.9 53.1 1.0 N C:CYS1108 4.0 53.1 1.0 N C:GLN1107 4.1 49.4 1.0 CA C:CYS1108 4.2 53.1 1.0 CB C:CYS1118 4.2 50.2 1.0 N C:ARG1106 4.3 49.5 1.0 SG C:CYS1102 4.5 42.7 1.0 C C:GLN1107 4.6 49.4 1.0 CA C:ARG1106 4.6 49.5 1.0 SG C:CYS1118 4.7 50.2 1.0 SG C:CYS1113 4.8 48.9 1.0 C C:ARG1106 4.9 49.5 1.0 CA C:GLN1107 5.0 49.4 1.0

Iron binding site 10 out of 36 in the Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of Azospirillum Brasilense Glutamate Synthase in A4B3 Oligomeric State within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe1502 b:83.5 occ:1.00 FE1 D:F3S1502 0.0 83.5 1.0 S1 D:F3S1502 2.2 83.5 1.0 S2 D:F3S1502 2.3 83.5 1.0 S3 D:F3S1502 2.3 83.5 1.0 SG D:CYS1113 2.3 73.3 1.0 FE4 D:F3S1502 2.7 83.5 1.0 FE3 D:F3S1502 2.7 83.5 1.0 SG D:CYS1102 3.3 68.9 1.0 CG1 D:VAL1115 3.5 69.2 1.0 S4 D:F3S1502 4.0 83.5 1.0 CB D:CYS1113 4.0 73.3 1.0 CA D:CYS1102 4.1 68.9 1.0 CB D:VAL1117 4.2 75.1 1.0 CB D:CYS1102 4.2 68.9 1.0 N D:ILE1103 4.4 68.6 1.0 CG1 D:VAL1105 4.5 74.9 1.0 CG2 D:VAL1117 4.7 75.1 1.0 SG D:CYS1108 4.7 70.8 1.0 C D:CYS1102 4.8 68.9 1.0 CB D:VAL1115 4.9 69.2 1.0 CG1 D:VAL1117 4.9 75.1 1.0 N D:CYS1118 4.9 74.2 1.0 N D:VAL1117 5.0 75.1 1.0

P.Swuec, A.Chaves-Sanjuan, C.Camilloni, M.A.Vanoni, M.Bolognesi. Cryo-Em Structures of Azospirillum Brasilense Glutamate Synthase in Its Oligomeric Assemblies. J.Mol.Biol. 2019.
ISSN: ESSN 1089-8638
PubMed: 31473159
DOI: 10.1016/J.JMB.2019.08.011