Atomistry » Iron » PDB 6rr4-6soq » 6s6u
Atomistry »
  Iron »
    PDB 6rr4-6soq »
      6s6u »

Iron in PDB 6s6u: Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.

Enzymatic activity of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.

All present enzymatic activity of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.:
1.4.1.13;

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50;

Binding sites:

The binding sites of Iron atom in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. (pdb code 6s6u). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 50 binding sites of Iron where determined in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State., PDB code: 6s6u:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 50 in 6s6u

Go back to Iron Binding Sites List in 6s6u
Iron binding site 1 out of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1502

b:33.7
occ:1.00
FE1 A:F3S1502 0.0 33.7 1.0
S1 A:F3S1502 2.2 33.7 1.0
SG A:CYS1113 2.3 29.9 1.0
S2 A:F3S1502 2.3 33.7 1.0
S3 A:F3S1502 2.3 33.7 1.0
FE4 A:F3S1502 2.7 33.7 1.0
FE3 A:F3S1502 2.7 33.7 1.0
CB A:CYS1113 3.0 29.9 1.0
CA A:CYS1113 3.9 29.9 1.0
S4 A:F3S1502 3.9 33.7 1.0
CB A:VAL1105 4.5 25.5 1.0
CG2 A:VAL1115 4.5 27.9 1.0
SG A:CYS1108 4.5 30.4 1.0
CD A:PRO1114 4.6 28.4 1.0
C A:CYS1113 4.6 29.9 1.0
N A:CYS1118 4.8 31.6 1.0
N A:PRO1114 4.8 28.4 1.0
CB A:VAL1117 4.9 29.8 1.0
SG A:CYS1102 4.9 28.7 1.0
CG2 A:VAL1105 5.0 25.5 1.0

Iron binding site 2 out of 50 in 6s6u

Go back to Iron Binding Sites List in 6s6u
Iron binding site 2 out of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1502

b:33.7
occ:1.00
FE3 A:F3S1502 0.0 33.7 1.0
S1 A:F3S1502 2.2 33.7 1.0
SG A:CYS1102 2.3 28.7 1.0
S4 A:F3S1502 2.3 33.7 1.0
S3 A:F3S1502 2.3 33.7 1.0
FE1 A:F3S1502 2.7 33.7 1.0
FE4 A:F3S1502 2.7 33.7 1.0
CB A:CYS1102 3.2 28.7 1.0
CA A:CYS1102 3.7 28.7 1.0
S2 A:F3S1502 3.9 33.7 1.0
N A:ILE1103 4.0 26.1 1.0
N A:MET1104 4.1 27.2 1.0
C A:CYS1102 4.3 28.7 1.0
N A:VAL1105 4.4 25.5 1.0
SG A:CYS1113 4.5 29.9 1.0
CA A:MET1104 4.6 27.2 1.0
SG A:CYS1108 4.9 30.4 1.0

Iron binding site 3 out of 50 in 6s6u

Go back to Iron Binding Sites List in 6s6u
Iron binding site 3 out of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1502

b:33.7
occ:1.00
FE4 A:F3S1502 0.0 33.7 1.0
S4 A:F3S1502 2.3 33.7 1.0
S2 A:F3S1502 2.3 33.7 1.0
SG A:CYS1108 2.3 30.4 1.0
S3 A:F3S1502 2.3 33.7 1.0
FE1 A:F3S1502 2.7 33.7 1.0
FE3 A:F3S1502 2.7 33.7 1.0
S1 A:F3S1502 3.8 33.7 1.0
CB A:CYS1108 3.9 30.4 1.0
CE A:MET479 4.1 28.4 1.0
N A:CYS1108 4.2 30.4 1.0
CA A:CYS1108 4.3 30.4 1.0
N A:ARG1106 4.3 27.8 1.0
N A:GLN1107 4.4 29.2 1.0
SG A:CYS1102 4.6 28.7 1.0
SG A:CYS1118 4.6 31.6 1.0
CA A:ARG1106 4.7 27.8 1.0
SG A:CYS1113 4.8 29.9 1.0
CB A:CYS1118 4.9 31.6 1.0
C A:GLN1107 4.9 29.2 1.0
CB A:CYS1113 5.0 29.9 1.0

Iron binding site 4 out of 50 in 6s6u

Go back to Iron Binding Sites List in 6s6u
Iron binding site 4 out of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1502

b:0.3
occ:1.00
FE1 B:F3S1502 0.0 0.3 1.0
S1 B:F3S1502 2.2 0.3 1.0
S2 B:F3S1502 2.3 0.3 1.0
SG B:CYS1113 2.3 0.6 1.0
S3 B:F3S1502 2.3 0.3 1.0
FE4 B:F3S1502 2.7 0.3 1.0
FE3 B:F3S1502 2.7 0.3 1.0
CB B:CYS1113 3.1 0.6 1.0
S4 B:F3S1502 3.9 0.3 1.0
CA B:CYS1113 4.2 0.6 1.0
SG B:CYS1108 4.2 0.4 1.0
CB B:VAL1117 4.5 1.0 1.0
N B:CYS1118 4.5 0.9 1.0
CD B:PRO1114 4.8 0.1 1.0
CB B:VAL1105 4.8 0.9 1.0
SG B:CYS1118 4.9 0.9 1.0
SG B:CYS1102 4.9 0.1 1.0
CG2 B:VAL1117 4.9 1.0 1.0
C B:CYS1113 4.9 0.6 1.0
N B:VAL1117 4.9 1.0 1.0
CB B:CYS1118 5.0 0.9 1.0

Iron binding site 5 out of 50 in 6s6u

Go back to Iron Binding Sites List in 6s6u
Iron binding site 5 out of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1502

b:0.3
occ:1.00
FE3 B:F3S1502 0.0 0.3 1.0
S1 B:F3S1502 2.2 0.3 1.0
S4 B:F3S1502 2.3 0.3 1.0
SG B:CYS1102 2.3 0.1 1.0
S3 B:F3S1502 2.3 0.3 1.0
FE4 B:F3S1502 2.7 0.3 1.0
FE1 B:F3S1502 2.7 0.3 1.0
CB B:CYS1102 3.4 0.1 1.0
CA B:CYS1102 3.7 0.1 1.0
N B:ILE1103 3.9 0.1 1.0
N B:MET1104 3.9 0.7 1.0
S2 B:F3S1502 4.0 0.3 1.0
N B:VAL1105 4.0 0.9 1.0
C B:CYS1102 4.2 0.1 1.0
CA B:MET1104 4.4 0.7 1.0
SG B:CYS1113 4.7 0.6 1.0
CB B:VAL1105 4.7 0.9 1.0
C B:MET1104 4.7 0.7 1.0
C B:ILE1103 4.8 0.1 1.0
CA B:ILE1103 4.9 0.1 1.0
CA B:VAL1105 4.9 0.9 1.0
SG B:CYS1108 4.9 0.4 1.0
N B:CYS1102 5.0 0.1 1.0
N B:ARG1106 5.0 0.5 1.0
CG2 B:VAL1105 5.0 0.9 1.0

Iron binding site 6 out of 50 in 6s6u

Go back to Iron Binding Sites List in 6s6u
Iron binding site 6 out of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1502

b:0.3
occ:1.00
FE4 B:F3S1502 0.0 0.3 1.0
S4 B:F3S1502 2.3 0.3 1.0
S2 B:F3S1502 2.3 0.3 1.0
SG B:CYS1108 2.3 0.4 1.0
S3 B:F3S1502 2.3 0.3 1.0
FE1 B:F3S1502 2.7 0.3 1.0
FE3 B:F3S1502 2.7 0.3 1.0
S1 B:F3S1502 3.8 0.3 1.0
CB B:CYS1108 4.0 0.4 1.0
N B:ARG1106 4.1 0.5 1.0
CE B:MET479 4.2 0.6 1.0
N B:CYS1108 4.3 0.4 1.0
N B:GLN1107 4.4 0.1 1.0
SG B:CYS1102 4.5 0.1 1.0
SG B:CYS1118 4.5 0.9 1.0
CA B:CYS1108 4.6 0.4 1.0
CA B:ARG1106 4.6 0.5 1.0
N B:VAL1105 4.8 0.9 1.0
SG B:CYS1113 4.9 0.6 1.0
C B:GLN1107 4.9 0.1 1.0

Iron binding site 7 out of 50 in 6s6u

Go back to Iron Binding Sites List in 6s6u
Iron binding site 7 out of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe1502

b:39.5
occ:1.00
FE1 C:F3S1502 0.0 39.5 1.0
S1 C:F3S1502 2.2 39.5 1.0
SG C:CYS1113 2.3 36.0 1.0
S2 C:F3S1502 2.3 39.5 1.0
S3 C:F3S1502 2.3 39.5 1.0
FE4 C:F3S1502 2.7 39.5 1.0
FE3 C:F3S1502 2.7 39.5 1.0
CB C:CYS1113 2.8 36.0 1.0
CA C:CYS1113 3.9 36.0 1.0
S4 C:F3S1502 3.9 39.5 1.0
N C:CYS1118 4.4 38.8 1.0
CB C:VAL1117 4.6 36.2 1.0
SG C:CYS1108 4.6 39.4 1.0
C C:CYS1113 4.7 36.0 1.0
SG C:CYS1102 4.7 32.7 1.0
CB C:CYS1118 4.8 38.8 1.0
SG C:CYS1118 4.8 38.8 1.0
N C:VAL1117 4.9 36.2 1.0
CB C:VAL1105 4.9 35.7 1.0

Iron binding site 8 out of 50 in 6s6u

Go back to Iron Binding Sites List in 6s6u
Iron binding site 8 out of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe1502

b:39.5
occ:1.00
FE3 C:F3S1502 0.0 39.5 1.0
S1 C:F3S1502 2.2 39.5 1.0
SG C:CYS1102 2.3 32.7 1.0
S4 C:F3S1502 2.3 39.5 1.0
S3 C:F3S1502 2.3 39.5 1.0
FE1 C:F3S1502 2.7 39.5 1.0
FE4 C:F3S1502 2.7 39.5 1.0
CB C:CYS1102 3.6 32.7 1.0
CA C:CYS1102 3.9 32.7 1.0
N C:ILE1103 3.9 34.3 1.0
N C:MET1104 3.9 34.9 1.0
S2 C:F3S1502 3.9 39.5 1.0
N C:VAL1105 4.0 35.7 1.0
CA C:MET1104 4.3 34.9 1.0
C C:CYS1102 4.3 32.7 1.0
SG C:CYS1113 4.6 36.0 1.0
C C:MET1104 4.7 34.9 1.0
CB C:VAL1105 4.7 35.7 1.0
C C:ILE1103 4.8 34.3 1.0
N C:ARG1106 4.9 37.3 1.0
CA C:VAL1105 4.9 35.7 1.0
SG C:CYS1108 4.9 39.4 1.0
CA C:ILE1103 4.9 34.3 1.0
CE C:MET479 5.0 38.8 1.0

Iron binding site 9 out of 50 in 6s6u

Go back to Iron Binding Sites List in 6s6u
Iron binding site 9 out of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe1502

b:39.5
occ:1.00
FE4 C:F3S1502 0.0 39.5 1.0
S4 C:F3S1502 2.3 39.5 1.0
S2 C:F3S1502 2.3 39.5 1.0
SG C:CYS1108 2.3 39.4 1.0
S3 C:F3S1502 2.3 39.5 1.0
FE1 C:F3S1502 2.7 39.5 1.0
FE3 C:F3S1502 2.7 39.5 1.0
CB C:CYS1108 3.8 39.4 1.0
S1 C:F3S1502 3.8 39.5 1.0
CE C:MET479 3.9 38.8 1.0
N C:CYS1108 4.1 39.4 1.0
CA C:CYS1108 4.2 39.4 1.0
N C:ARG1106 4.3 37.3 1.0
N C:GLN1107 4.4 38.7 1.0
SG C:CYS1102 4.4 32.7 1.0
SG C:CYS1118 4.6 38.8 1.0
CA C:ARG1106 4.7 37.3 1.0
C C:GLN1107 4.8 38.7 1.0
CB C:CYS1118 4.9 38.8 1.0
SG C:CYS1113 4.9 36.0 1.0
CB C:CYS1113 4.9 36.0 1.0
N C:VAL1105 5.0 35.7 1.0

Iron binding site 10 out of 50 in 6s6u

Go back to Iron Binding Sites List in 6s6u
Iron binding site 10 out of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe1502

b:33.5
occ:1.00
FE1 D:F3S1502 0.0 33.5 1.0
S1 D:F3S1502 2.2 33.5 1.0
SG D:CYS1113 2.3 29.6 1.0
S2 D:F3S1502 2.3 33.5 1.0
S3 D:F3S1502 2.3 33.5 1.0
FE4 D:F3S1502 2.7 33.5 1.0
FE3 D:F3S1502 2.7 33.5 1.0
CB D:CYS1113 3.0 29.6 1.0
CA D:CYS1113 3.9 29.6 1.0
S4 D:F3S1502 3.9 33.5 1.0
CB D:VAL1105 4.5 25.7 1.0
CG2 D:VAL1115 4.5 27.1 1.0
SG D:CYS1108 4.5 30.8 1.0
CD D:PRO1114 4.6 27.7 1.0
C D:CYS1113 4.6 29.6 1.0
N D:CYS1118 4.8 31.3 1.0
N D:PRO1114 4.8 27.7 1.0
CB D:VAL1117 4.9 29.4 1.0
SG D:CYS1102 4.9 28.7 1.0
CG2 D:VAL1105 5.0 25.7 1.0

Reference:

P.Swuec, A.Chaves-Sanjuan, C.Camilloni, M.A.Vanoni, M.Bolognesi. Cryo-Em Structures of Azospirillum Brasilense Glutamate Synthase in Its Oligomeric Assemblies. J.Mol.Biol. 2019.
ISSN: ESSN 1089-8638
PubMed: 31473159
DOI: 10.1016/J.JMB.2019.08.011
Page generated: Wed Aug 7 09:32:36 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy