Iron in PDB 6s6u: Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.
Enzymatic activity of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.
All present enzymatic activity of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.:
1.4.1.13;
Iron Binding Sites:
Iron binding site 1 out
of 50 in 6s6u
Go back to
Iron Binding Sites List in 6s6u
Iron binding site 1 out
of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1502
b:33.7
occ:1.00
|
FE1
|
A:F3S1502
|
0.0
|
33.7
|
1.0
|
S1
|
A:F3S1502
|
2.2
|
33.7
|
1.0
|
SG
|
A:CYS1113
|
2.3
|
29.9
|
1.0
|
S2
|
A:F3S1502
|
2.3
|
33.7
|
1.0
|
S3
|
A:F3S1502
|
2.3
|
33.7
|
1.0
|
FE4
|
A:F3S1502
|
2.7
|
33.7
|
1.0
|
FE3
|
A:F3S1502
|
2.7
|
33.7
|
1.0
|
CB
|
A:CYS1113
|
3.0
|
29.9
|
1.0
|
CA
|
A:CYS1113
|
3.9
|
29.9
|
1.0
|
S4
|
A:F3S1502
|
3.9
|
33.7
|
1.0
|
CB
|
A:VAL1105
|
4.5
|
25.5
|
1.0
|
CG2
|
A:VAL1115
|
4.5
|
27.9
|
1.0
|
SG
|
A:CYS1108
|
4.5
|
30.4
|
1.0
|
CD
|
A:PRO1114
|
4.6
|
28.4
|
1.0
|
C
|
A:CYS1113
|
4.6
|
29.9
|
1.0
|
N
|
A:CYS1118
|
4.8
|
31.6
|
1.0
|
N
|
A:PRO1114
|
4.8
|
28.4
|
1.0
|
CB
|
A:VAL1117
|
4.9
|
29.8
|
1.0
|
SG
|
A:CYS1102
|
4.9
|
28.7
|
1.0
|
CG2
|
A:VAL1105
|
5.0
|
25.5
|
1.0
|
|
Iron binding site 2 out
of 50 in 6s6u
Go back to
Iron Binding Sites List in 6s6u
Iron binding site 2 out
of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1502
b:33.7
occ:1.00
|
FE3
|
A:F3S1502
|
0.0
|
33.7
|
1.0
|
S1
|
A:F3S1502
|
2.2
|
33.7
|
1.0
|
SG
|
A:CYS1102
|
2.3
|
28.7
|
1.0
|
S4
|
A:F3S1502
|
2.3
|
33.7
|
1.0
|
S3
|
A:F3S1502
|
2.3
|
33.7
|
1.0
|
FE1
|
A:F3S1502
|
2.7
|
33.7
|
1.0
|
FE4
|
A:F3S1502
|
2.7
|
33.7
|
1.0
|
CB
|
A:CYS1102
|
3.2
|
28.7
|
1.0
|
CA
|
A:CYS1102
|
3.7
|
28.7
|
1.0
|
S2
|
A:F3S1502
|
3.9
|
33.7
|
1.0
|
N
|
A:ILE1103
|
4.0
|
26.1
|
1.0
|
N
|
A:MET1104
|
4.1
|
27.2
|
1.0
|
C
|
A:CYS1102
|
4.3
|
28.7
|
1.0
|
N
|
A:VAL1105
|
4.4
|
25.5
|
1.0
|
SG
|
A:CYS1113
|
4.5
|
29.9
|
1.0
|
CA
|
A:MET1104
|
4.6
|
27.2
|
1.0
|
SG
|
A:CYS1108
|
4.9
|
30.4
|
1.0
|
|
Iron binding site 3 out
of 50 in 6s6u
Go back to
Iron Binding Sites List in 6s6u
Iron binding site 3 out
of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1502
b:33.7
occ:1.00
|
FE4
|
A:F3S1502
|
0.0
|
33.7
|
1.0
|
S4
|
A:F3S1502
|
2.3
|
33.7
|
1.0
|
S2
|
A:F3S1502
|
2.3
|
33.7
|
1.0
|
SG
|
A:CYS1108
|
2.3
|
30.4
|
1.0
|
S3
|
A:F3S1502
|
2.3
|
33.7
|
1.0
|
FE1
|
A:F3S1502
|
2.7
|
33.7
|
1.0
|
FE3
|
A:F3S1502
|
2.7
|
33.7
|
1.0
|
S1
|
A:F3S1502
|
3.8
|
33.7
|
1.0
|
CB
|
A:CYS1108
|
3.9
|
30.4
|
1.0
|
CE
|
A:MET479
|
4.1
|
28.4
|
1.0
|
N
|
A:CYS1108
|
4.2
|
30.4
|
1.0
|
CA
|
A:CYS1108
|
4.3
|
30.4
|
1.0
|
N
|
A:ARG1106
|
4.3
|
27.8
|
1.0
|
N
|
A:GLN1107
|
4.4
|
29.2
|
1.0
|
SG
|
A:CYS1102
|
4.6
|
28.7
|
1.0
|
SG
|
A:CYS1118
|
4.6
|
31.6
|
1.0
|
CA
|
A:ARG1106
|
4.7
|
27.8
|
1.0
|
SG
|
A:CYS1113
|
4.8
|
29.9
|
1.0
|
CB
|
A:CYS1118
|
4.9
|
31.6
|
1.0
|
C
|
A:GLN1107
|
4.9
|
29.2
|
1.0
|
CB
|
A:CYS1113
|
5.0
|
29.9
|
1.0
|
|
Iron binding site 4 out
of 50 in 6s6u
Go back to
Iron Binding Sites List in 6s6u
Iron binding site 4 out
of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1502
b:0.3
occ:1.00
|
FE1
|
B:F3S1502
|
0.0
|
0.3
|
1.0
|
S1
|
B:F3S1502
|
2.2
|
0.3
|
1.0
|
S2
|
B:F3S1502
|
2.3
|
0.3
|
1.0
|
SG
|
B:CYS1113
|
2.3
|
0.6
|
1.0
|
S3
|
B:F3S1502
|
2.3
|
0.3
|
1.0
|
FE4
|
B:F3S1502
|
2.7
|
0.3
|
1.0
|
FE3
|
B:F3S1502
|
2.7
|
0.3
|
1.0
|
CB
|
B:CYS1113
|
3.1
|
0.6
|
1.0
|
S4
|
B:F3S1502
|
3.9
|
0.3
|
1.0
|
CA
|
B:CYS1113
|
4.2
|
0.6
|
1.0
|
SG
|
B:CYS1108
|
4.2
|
0.4
|
1.0
|
CB
|
B:VAL1117
|
4.5
|
1.0
|
1.0
|
N
|
B:CYS1118
|
4.5
|
0.9
|
1.0
|
CD
|
B:PRO1114
|
4.8
|
0.1
|
1.0
|
CB
|
B:VAL1105
|
4.8
|
0.9
|
1.0
|
SG
|
B:CYS1118
|
4.9
|
0.9
|
1.0
|
SG
|
B:CYS1102
|
4.9
|
0.1
|
1.0
|
CG2
|
B:VAL1117
|
4.9
|
1.0
|
1.0
|
C
|
B:CYS1113
|
4.9
|
0.6
|
1.0
|
N
|
B:VAL1117
|
4.9
|
1.0
|
1.0
|
CB
|
B:CYS1118
|
5.0
|
0.9
|
1.0
|
|
Iron binding site 5 out
of 50 in 6s6u
Go back to
Iron Binding Sites List in 6s6u
Iron binding site 5 out
of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1502
b:0.3
occ:1.00
|
FE3
|
B:F3S1502
|
0.0
|
0.3
|
1.0
|
S1
|
B:F3S1502
|
2.2
|
0.3
|
1.0
|
S4
|
B:F3S1502
|
2.3
|
0.3
|
1.0
|
SG
|
B:CYS1102
|
2.3
|
0.1
|
1.0
|
S3
|
B:F3S1502
|
2.3
|
0.3
|
1.0
|
FE4
|
B:F3S1502
|
2.7
|
0.3
|
1.0
|
FE1
|
B:F3S1502
|
2.7
|
0.3
|
1.0
|
CB
|
B:CYS1102
|
3.4
|
0.1
|
1.0
|
CA
|
B:CYS1102
|
3.7
|
0.1
|
1.0
|
N
|
B:ILE1103
|
3.9
|
0.1
|
1.0
|
N
|
B:MET1104
|
3.9
|
0.7
|
1.0
|
S2
|
B:F3S1502
|
4.0
|
0.3
|
1.0
|
N
|
B:VAL1105
|
4.0
|
0.9
|
1.0
|
C
|
B:CYS1102
|
4.2
|
0.1
|
1.0
|
CA
|
B:MET1104
|
4.4
|
0.7
|
1.0
|
SG
|
B:CYS1113
|
4.7
|
0.6
|
1.0
|
CB
|
B:VAL1105
|
4.7
|
0.9
|
1.0
|
C
|
B:MET1104
|
4.7
|
0.7
|
1.0
|
C
|
B:ILE1103
|
4.8
|
0.1
|
1.0
|
CA
|
B:ILE1103
|
4.9
|
0.1
|
1.0
|
CA
|
B:VAL1105
|
4.9
|
0.9
|
1.0
|
SG
|
B:CYS1108
|
4.9
|
0.4
|
1.0
|
N
|
B:CYS1102
|
5.0
|
0.1
|
1.0
|
N
|
B:ARG1106
|
5.0
|
0.5
|
1.0
|
CG2
|
B:VAL1105
|
5.0
|
0.9
|
1.0
|
|
Iron binding site 6 out
of 50 in 6s6u
Go back to
Iron Binding Sites List in 6s6u
Iron binding site 6 out
of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1502
b:0.3
occ:1.00
|
FE4
|
B:F3S1502
|
0.0
|
0.3
|
1.0
|
S4
|
B:F3S1502
|
2.3
|
0.3
|
1.0
|
S2
|
B:F3S1502
|
2.3
|
0.3
|
1.0
|
SG
|
B:CYS1108
|
2.3
|
0.4
|
1.0
|
S3
|
B:F3S1502
|
2.3
|
0.3
|
1.0
|
FE1
|
B:F3S1502
|
2.7
|
0.3
|
1.0
|
FE3
|
B:F3S1502
|
2.7
|
0.3
|
1.0
|
S1
|
B:F3S1502
|
3.8
|
0.3
|
1.0
|
CB
|
B:CYS1108
|
4.0
|
0.4
|
1.0
|
N
|
B:ARG1106
|
4.1
|
0.5
|
1.0
|
CE
|
B:MET479
|
4.2
|
0.6
|
1.0
|
N
|
B:CYS1108
|
4.3
|
0.4
|
1.0
|
N
|
B:GLN1107
|
4.4
|
0.1
|
1.0
|
SG
|
B:CYS1102
|
4.5
|
0.1
|
1.0
|
SG
|
B:CYS1118
|
4.5
|
0.9
|
1.0
|
CA
|
B:CYS1108
|
4.6
|
0.4
|
1.0
|
CA
|
B:ARG1106
|
4.6
|
0.5
|
1.0
|
N
|
B:VAL1105
|
4.8
|
0.9
|
1.0
|
SG
|
B:CYS1113
|
4.9
|
0.6
|
1.0
|
C
|
B:GLN1107
|
4.9
|
0.1
|
1.0
|
|
Iron binding site 7 out
of 50 in 6s6u
Go back to
Iron Binding Sites List in 6s6u
Iron binding site 7 out
of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1502
b:39.5
occ:1.00
|
FE1
|
C:F3S1502
|
0.0
|
39.5
|
1.0
|
S1
|
C:F3S1502
|
2.2
|
39.5
|
1.0
|
SG
|
C:CYS1113
|
2.3
|
36.0
|
1.0
|
S2
|
C:F3S1502
|
2.3
|
39.5
|
1.0
|
S3
|
C:F3S1502
|
2.3
|
39.5
|
1.0
|
FE4
|
C:F3S1502
|
2.7
|
39.5
|
1.0
|
FE3
|
C:F3S1502
|
2.7
|
39.5
|
1.0
|
CB
|
C:CYS1113
|
2.8
|
36.0
|
1.0
|
CA
|
C:CYS1113
|
3.9
|
36.0
|
1.0
|
S4
|
C:F3S1502
|
3.9
|
39.5
|
1.0
|
N
|
C:CYS1118
|
4.4
|
38.8
|
1.0
|
CB
|
C:VAL1117
|
4.6
|
36.2
|
1.0
|
SG
|
C:CYS1108
|
4.6
|
39.4
|
1.0
|
C
|
C:CYS1113
|
4.7
|
36.0
|
1.0
|
SG
|
C:CYS1102
|
4.7
|
32.7
|
1.0
|
CB
|
C:CYS1118
|
4.8
|
38.8
|
1.0
|
SG
|
C:CYS1118
|
4.8
|
38.8
|
1.0
|
N
|
C:VAL1117
|
4.9
|
36.2
|
1.0
|
CB
|
C:VAL1105
|
4.9
|
35.7
|
1.0
|
|
Iron binding site 8 out
of 50 in 6s6u
Go back to
Iron Binding Sites List in 6s6u
Iron binding site 8 out
of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1502
b:39.5
occ:1.00
|
FE3
|
C:F3S1502
|
0.0
|
39.5
|
1.0
|
S1
|
C:F3S1502
|
2.2
|
39.5
|
1.0
|
SG
|
C:CYS1102
|
2.3
|
32.7
|
1.0
|
S4
|
C:F3S1502
|
2.3
|
39.5
|
1.0
|
S3
|
C:F3S1502
|
2.3
|
39.5
|
1.0
|
FE1
|
C:F3S1502
|
2.7
|
39.5
|
1.0
|
FE4
|
C:F3S1502
|
2.7
|
39.5
|
1.0
|
CB
|
C:CYS1102
|
3.6
|
32.7
|
1.0
|
CA
|
C:CYS1102
|
3.9
|
32.7
|
1.0
|
N
|
C:ILE1103
|
3.9
|
34.3
|
1.0
|
N
|
C:MET1104
|
3.9
|
34.9
|
1.0
|
S2
|
C:F3S1502
|
3.9
|
39.5
|
1.0
|
N
|
C:VAL1105
|
4.0
|
35.7
|
1.0
|
CA
|
C:MET1104
|
4.3
|
34.9
|
1.0
|
C
|
C:CYS1102
|
4.3
|
32.7
|
1.0
|
SG
|
C:CYS1113
|
4.6
|
36.0
|
1.0
|
C
|
C:MET1104
|
4.7
|
34.9
|
1.0
|
CB
|
C:VAL1105
|
4.7
|
35.7
|
1.0
|
C
|
C:ILE1103
|
4.8
|
34.3
|
1.0
|
N
|
C:ARG1106
|
4.9
|
37.3
|
1.0
|
CA
|
C:VAL1105
|
4.9
|
35.7
|
1.0
|
SG
|
C:CYS1108
|
4.9
|
39.4
|
1.0
|
CA
|
C:ILE1103
|
4.9
|
34.3
|
1.0
|
CE
|
C:MET479
|
5.0
|
38.8
|
1.0
|
|
Iron binding site 9 out
of 50 in 6s6u
Go back to
Iron Binding Sites List in 6s6u
Iron binding site 9 out
of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1502
b:39.5
occ:1.00
|
FE4
|
C:F3S1502
|
0.0
|
39.5
|
1.0
|
S4
|
C:F3S1502
|
2.3
|
39.5
|
1.0
|
S2
|
C:F3S1502
|
2.3
|
39.5
|
1.0
|
SG
|
C:CYS1108
|
2.3
|
39.4
|
1.0
|
S3
|
C:F3S1502
|
2.3
|
39.5
|
1.0
|
FE1
|
C:F3S1502
|
2.7
|
39.5
|
1.0
|
FE3
|
C:F3S1502
|
2.7
|
39.5
|
1.0
|
CB
|
C:CYS1108
|
3.8
|
39.4
|
1.0
|
S1
|
C:F3S1502
|
3.8
|
39.5
|
1.0
|
CE
|
C:MET479
|
3.9
|
38.8
|
1.0
|
N
|
C:CYS1108
|
4.1
|
39.4
|
1.0
|
CA
|
C:CYS1108
|
4.2
|
39.4
|
1.0
|
N
|
C:ARG1106
|
4.3
|
37.3
|
1.0
|
N
|
C:GLN1107
|
4.4
|
38.7
|
1.0
|
SG
|
C:CYS1102
|
4.4
|
32.7
|
1.0
|
SG
|
C:CYS1118
|
4.6
|
38.8
|
1.0
|
CA
|
C:ARG1106
|
4.7
|
37.3
|
1.0
|
C
|
C:GLN1107
|
4.8
|
38.7
|
1.0
|
CB
|
C:CYS1118
|
4.9
|
38.8
|
1.0
|
SG
|
C:CYS1113
|
4.9
|
36.0
|
1.0
|
CB
|
C:CYS1113
|
4.9
|
36.0
|
1.0
|
N
|
C:VAL1105
|
5.0
|
35.7
|
1.0
|
|
Iron binding site 10 out
of 50 in 6s6u
Go back to
Iron Binding Sites List in 6s6u
Iron binding site 10 out
of 50 in the Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Structure of Azospirillum Brasilense Glutamate Synthase in A6B4 Oligomeric State. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe1502
b:33.5
occ:1.00
|
FE1
|
D:F3S1502
|
0.0
|
33.5
|
1.0
|
S1
|
D:F3S1502
|
2.2
|
33.5
|
1.0
|
SG
|
D:CYS1113
|
2.3
|
29.6
|
1.0
|
S2
|
D:F3S1502
|
2.3
|
33.5
|
1.0
|
S3
|
D:F3S1502
|
2.3
|
33.5
|
1.0
|
FE4
|
D:F3S1502
|
2.7
|
33.5
|
1.0
|
FE3
|
D:F3S1502
|
2.7
|
33.5
|
1.0
|
CB
|
D:CYS1113
|
3.0
|
29.6
|
1.0
|
CA
|
D:CYS1113
|
3.9
|
29.6
|
1.0
|
S4
|
D:F3S1502
|
3.9
|
33.5
|
1.0
|
CB
|
D:VAL1105
|
4.5
|
25.7
|
1.0
|
CG2
|
D:VAL1115
|
4.5
|
27.1
|
1.0
|
SG
|
D:CYS1108
|
4.5
|
30.8
|
1.0
|
CD
|
D:PRO1114
|
4.6
|
27.7
|
1.0
|
C
|
D:CYS1113
|
4.6
|
29.6
|
1.0
|
N
|
D:CYS1118
|
4.8
|
31.3
|
1.0
|
N
|
D:PRO1114
|
4.8
|
27.7
|
1.0
|
CB
|
D:VAL1117
|
4.9
|
29.4
|
1.0
|
SG
|
D:CYS1102
|
4.9
|
28.7
|
1.0
|
CG2
|
D:VAL1105
|
5.0
|
25.7
|
1.0
|
|
Reference:
P.Swuec,
A.Chaves-Sanjuan,
C.Camilloni,
M.A.Vanoni,
M.Bolognesi.
Cryo-Em Structures of Azospirillum Brasilense Glutamate Synthase in Its Oligomeric Assemblies. J.Mol.Biol. 2019.
ISSN: ESSN 1089-8638
PubMed: 31473159
DOI: 10.1016/J.JMB.2019.08.011
Page generated: Wed Aug 7 09:32:36 2024
|