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Iron in PDB 6soo: 20 Minute FE2+ Soaked Structure of Synftn Variant D137A

Enzymatic activity of 20 Minute FE2+ Soaked Structure of Synftn Variant D137A

All present enzymatic activity of 20 Minute FE2+ Soaked Structure of Synftn Variant D137A:
1.16.3.2;

Protein crystallography data

The structure of 20 Minute FE2+ Soaked Structure of Synftn Variant D137A, PDB code: 6soo was solved by A.M.Hemmings, J.M.Bradley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.95 / 1.57
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 176.480, 176.480, 176.480, 90.00, 90.00, 90.00
R / Rfree (%) 16.5 / 19.6

Iron Binding Sites:

The binding sites of Iron atom in the 20 Minute FE2+ Soaked Structure of Synftn Variant D137A (pdb code 6soo). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the 20 Minute FE2+ Soaked Structure of Synftn Variant D137A, PDB code: 6soo:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 6soo

Go back to Iron Binding Sites List in 6soo
Iron binding site 1 out of 2 in the 20 Minute FE2+ Soaked Structure of Synftn Variant D137A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of 20 Minute FE2+ Soaked Structure of Synftn Variant D137A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:27.4
occ:0.56
O A:HOH317 2.0 45.7 1.0
OE1 A:GLU33 2.0 36.0 1.0
OE1 A:GLU66 2.1 35.9 1.0
O A:HOH310 2.1 36.2 1.0
ND1 A:HIS69 2.3 34.0 1.0
CD A:GLU33 3.0 36.3 1.0
CD A:GLU66 3.0 34.2 1.0
CE1 A:HIS69 3.2 36.3 1.0
OE2 A:GLU33 3.3 37.8 1.0
CG A:HIS69 3.3 32.6 1.0
OE2 A:GLU66 3.3 35.9 1.0
CB A:HIS69 3.6 29.2 1.0
FE A:FE202 3.6 60.6 0.5
CG2 A:THR113 3.8 34.2 1.0
O A:HOH301 4.0 58.8 1.0
OE1 A:GLN143 4.1 35.4 1.0
O A:HOH440 4.3 50.1 1.0
CG A:GLU66 4.3 30.5 1.0
NE2 A:HIS69 4.3 36.7 1.0
CG A:GLU33 4.4 31.9 1.0
CA A:GLU66 4.4 25.3 1.0
CD2 A:HIS69 4.4 34.6 1.0
O A:HOH323 4.6 37.1 1.0
CB A:GLU66 4.6 27.4 1.0
O A:HOH419 4.6 43.5 1.0
CB A:GLU33 4.7 28.7 1.0
O A:GLU66 4.8 25.6 1.0
CD A:GLN143 4.9 33.5 1.0
OE2 A:GLU110 4.9 40.6 1.0
CB A:THR113 5.0 32.2 1.0

Iron binding site 2 out of 2 in 6soo

Go back to Iron Binding Sites List in 6soo
Iron binding site 2 out of 2 in the 20 Minute FE2+ Soaked Structure of Synftn Variant D137A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of 20 Minute FE2+ Soaked Structure of Synftn Variant D137A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe202

b:60.6
occ:0.54
OE2 A:GLU66 1.8 35.9 1.0
O A:HOH301 1.9 58.8 1.0
OE2 A:GLU110 2.0 40.6 1.0
O A:HOH317 2.2 45.7 1.0
O A:HOH323 2.4 37.1 1.0
OE1 A:GLU110 2.4 44.6 1.0
CD A:GLU110 2.5 40.4 1.0
O A:HOH315 2.8 45.6 1.0
CD A:GLU66 2.8 34.2 1.0
OE1 A:GLU66 3.2 35.9 1.0
FE A:FE201 3.6 27.4 0.6
CG A:GLU110 3.9 37.5 1.0
OH A:TYR40 4.0 34.1 1.0
CG A:GLU66 4.1 30.5 1.0
OE1 A:GLN143 4.1 35.4 1.0
CE2 A:TYR40 4.2 29.4 1.0
NE2 A:GLN143 4.2 33.4 1.0
OG1 A:THR113 4.5 33.5 1.0
CA A:GLU110 4.5 31.2 1.0
O A:HOH451 4.5 59.2 1.0
CD A:GLN143 4.6 33.5 1.0
CZ A:TYR40 4.6 30.8 1.0
CB A:GLU110 4.6 32.8 1.0
CG2 A:THR113 4.6 34.2 1.0
CB A:THR113 4.6 32.2 1.0
O A:HOH310 4.8 36.2 1.0
CE1 A:HIS69 4.8 36.3 1.0
ND1 A:HIS69 4.9 34.0 1.0

Reference:

J.M.Bradley, J.Pullin, G.R.Moore, D.A.Svistunenko, A.M.Hemmings, N.E.Le Brun. Routes of Iron Entry Into, and Exit From, the Catalytic Ferroxidase Sites of the Prokaryotic Ferritin Synftn. Dalton Trans 2020.
ISSN: ESSN 1477-9234
PubMed: 31930254
DOI: 10.1039/C9DT03570B
Page generated: Wed Aug 7 09:57:21 2024

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