Iron in PDB 6te7: The Structure of CYP121 in Complex with Inhibitor S2
Enzymatic activity of The Structure of CYP121 in Complex with Inhibitor S2
All present enzymatic activity of The Structure of CYP121 in Complex with Inhibitor S2:
1.14.19.70;
Protein crystallography data
The structure of The Structure of CYP121 in Complex with Inhibitor S2, PDB code: 6te7
was solved by
S.Adam,
J.Koehnke,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
41.47 /
1.50
|
Space group
|
P 65 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
77.487,
77.487,
263.746,
90,
90,
120
|
R / Rfree (%)
|
16.5 /
18.4
|
Other elements in 6te7:
The structure of The Structure of CYP121 in Complex with Inhibitor S2 also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the The Structure of CYP121 in Complex with Inhibitor S2
(pdb code 6te7). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
The Structure of CYP121 in Complex with Inhibitor S2, PDB code: 6te7:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 6te7
Go back to
Iron Binding Sites List in 6te7
Iron binding site 1 out
of 2 in the The Structure of CYP121 in Complex with Inhibitor S2
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of The Structure of CYP121 in Complex with Inhibitor S2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe904
b:14.2
occ:0.76
|
FE
|
A:HEM904
|
0.0
|
14.2
|
0.8
|
FE
|
A:HEM904
|
0.3
|
9.9
|
0.2
|
ND
|
A:HEM904
|
1.9
|
11.6
|
0.2
|
NB
|
A:HEM904
|
2.0
|
12.2
|
0.8
|
NC
|
A:HEM904
|
2.0
|
11.6
|
0.2
|
NA
|
A:HEM904
|
2.0
|
11.4
|
0.8
|
ND
|
A:HEM904
|
2.0
|
13.1
|
0.8
|
NA
|
A:HEM904
|
2.1
|
12.6
|
0.2
|
NC
|
A:HEM904
|
2.1
|
13.2
|
0.8
|
NB
|
A:HEM904
|
2.2
|
12.7
|
0.2
|
SG
|
A:CYS345
|
2.3
|
13.8
|
1.0
|
O
|
A:HOH1176
|
2.4
|
24.1
|
1.0
|
C4D
|
A:HEM904
|
2.9
|
12.0
|
0.2
|
C1D
|
A:HEM904
|
2.9
|
11.2
|
0.2
|
C4C
|
A:HEM904
|
3.0
|
11.3
|
0.2
|
C1B
|
A:HEM904
|
3.0
|
11.1
|
0.8
|
C4B
|
A:HEM904
|
3.0
|
10.9
|
0.8
|
C4D
|
A:HEM904
|
3.0
|
12.2
|
0.8
|
C1A
|
A:HEM904
|
3.0
|
11.4
|
0.8
|
C1A
|
A:HEM904
|
3.0
|
12.7
|
0.2
|
C4A
|
A:HEM904
|
3.0
|
10.9
|
0.8
|
C1C
|
A:HEM904
|
3.1
|
11.6
|
0.8
|
C1C
|
A:HEM904
|
3.1
|
11.5
|
0.2
|
C1D
|
A:HEM904
|
3.1
|
12.5
|
0.8
|
C4C
|
A:HEM904
|
3.1
|
12.4
|
0.8
|
HB2
|
A:CYS345
|
3.1
|
16.6
|
1.0
|
C4A
|
A:HEM904
|
3.1
|
12.6
|
0.2
|
C4B
|
A:HEM904
|
3.2
|
12.2
|
0.2
|
C1B
|
A:HEM904
|
3.2
|
12.8
|
0.2
|
CB
|
A:CYS345
|
3.3
|
13.8
|
1.0
|
CHA
|
A:HEM904
|
3.3
|
12.4
|
0.2
|
CHD
|
A:HEM904
|
3.3
|
11.1
|
0.2
|
CHA
|
A:HEM904
|
3.4
|
12.1
|
0.8
|
CHB
|
A:HEM904
|
3.4
|
11.6
|
0.8
|
CHC
|
A:HEM904
|
3.4
|
12.3
|
0.8
|
CHD
|
A:HEM904
|
3.5
|
12.7
|
0.8
|
CHC
|
A:HEM904
|
3.5
|
12.0
|
0.2
|
CHB
|
A:HEM904
|
3.5
|
12.8
|
0.2
|
HA
|
A:CYS345
|
3.7
|
15.6
|
1.0
|
HD2
|
A:PRO346
|
3.9
|
17.4
|
1.0
|
HB3
|
A:CYS345
|
4.1
|
16.6
|
1.0
|
CA
|
A:CYS345
|
4.1
|
13.0
|
1.0
|
C2D
|
A:HEM904
|
4.1
|
11.0
|
0.2
|
C3D
|
A:HEM904
|
4.1
|
11.3
|
0.2
|
H
|
A:GLY347
|
4.2
|
18.4
|
1.0
|
C3B
|
A:HEM904
|
4.2
|
13.0
|
0.8
|
C2B
|
A:HEM904
|
4.2
|
12.3
|
0.8
|
C3C
|
A:HEM904
|
4.2
|
11.7
|
0.2
|
C3A
|
A:HEM904
|
4.3
|
11.0
|
0.8
|
C2A
|
A:HEM904
|
4.3
|
11.7
|
0.8
|
C2C
|
A:HEM904
|
4.3
|
12.1
|
0.2
|
HHA
|
A:HEM904
|
4.3
|
14.9
|
0.2
|
C3D
|
A:HEM904
|
4.3
|
13.6
|
0.8
|
C2A
|
A:HEM904
|
4.3
|
13.6
|
0.2
|
HHD
|
A:HEM904
|
4.3
|
13.4
|
0.2
|
C2D
|
A:HEM904
|
4.3
|
13.7
|
0.8
|
HHA
|
A:HEM904
|
4.3
|
14.5
|
0.8
|
C2C
|
A:HEM904
|
4.3
|
12.8
|
0.8
|
C3C
|
A:HEM904
|
4.3
|
13.3
|
0.8
|
C3A
|
A:HEM904
|
4.3
|
13.4
|
0.2
|
HD1
|
A:PHE338
|
4.3
|
15.3
|
1.0
|
C2B
|
A:HEM904
|
4.4
|
13.5
|
0.2
|
HHB
|
A:HEM904
|
4.4
|
13.9
|
0.8
|
C3B
|
A:HEM904
|
4.4
|
12.6
|
0.2
|
HHC
|
A:HEM904
|
4.4
|
14.8
|
0.8
|
HHD
|
A:HEM904
|
4.5
|
15.2
|
0.8
|
HHC
|
A:HEM904
|
4.5
|
14.4
|
0.2
|
HHB
|
A:HEM904
|
4.5
|
15.3
|
0.2
|
O
|
A:HOH1391
|
4.5
|
31.0
|
1.0
|
OG
|
A:SER237
|
4.5
|
13.0
|
1.0
|
HB1
|
A:ALA233
|
4.6
|
14.6
|
1.0
|
HB3
|
A:SER237
|
4.7
|
14.9
|
1.0
|
HB2
|
A:SER237
|
4.7
|
14.9
|
1.0
|
CD
|
A:PRO346
|
4.8
|
14.5
|
1.0
|
HA3
|
A:GLY347
|
4.8
|
18.0
|
1.0
|
HZ
|
A:PHE280
|
4.9
|
15.2
|
1.0
|
C
|
A:CYS345
|
4.9
|
14.4
|
1.0
|
CB
|
A:SER237
|
4.9
|
12.4
|
1.0
|
H141
|
A:N55901
|
4.9
|
74.0
|
1.0
|
N
|
A:GLY347
|
5.0
|
15.4
|
1.0
|
HG
|
A:SER237
|
5.0
|
15.6
|
1.0
|
|
Iron binding site 2 out
of 2 in 6te7
Go back to
Iron Binding Sites List in 6te7
Iron binding site 2 out
of 2 in the The Structure of CYP121 in Complex with Inhibitor S2
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of The Structure of CYP121 in Complex with Inhibitor S2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe904
b:9.9
occ:0.24
|
FE
|
A:HEM904
|
0.0
|
9.9
|
0.2
|
FE
|
A:HEM904
|
0.3
|
14.2
|
0.8
|
NC
|
A:HEM904
|
1.8
|
13.2
|
0.8
|
NB
|
A:HEM904
|
1.9
|
12.7
|
0.2
|
ND
|
A:HEM904
|
2.0
|
13.1
|
0.8
|
NA
|
A:HEM904
|
2.0
|
12.6
|
0.2
|
NB
|
A:HEM904
|
2.0
|
12.2
|
0.8
|
NC
|
A:HEM904
|
2.1
|
11.6
|
0.2
|
ND
|
A:HEM904
|
2.2
|
11.6
|
0.2
|
NA
|
A:HEM904
|
2.3
|
11.4
|
0.8
|
O
|
A:HOH1176
|
2.3
|
24.1
|
1.0
|
SG
|
A:CYS345
|
2.5
|
13.8
|
1.0
|
C4C
|
A:HEM904
|
2.8
|
12.4
|
0.8
|
C1C
|
A:HEM904
|
2.9
|
11.6
|
0.8
|
C1B
|
A:HEM904
|
2.9
|
12.8
|
0.2
|
C1D
|
A:HEM904
|
2.9
|
12.5
|
0.8
|
C4B
|
A:HEM904
|
3.0
|
12.2
|
0.2
|
C4B
|
A:HEM904
|
3.0
|
10.9
|
0.8
|
C4A
|
A:HEM904
|
3.0
|
12.6
|
0.2
|
C1C
|
A:HEM904
|
3.0
|
11.5
|
0.2
|
C4D
|
A:HEM904
|
3.1
|
12.2
|
0.8
|
C1A
|
A:HEM904
|
3.1
|
12.7
|
0.2
|
C4C
|
A:HEM904
|
3.1
|
11.3
|
0.2
|
C1B
|
A:HEM904
|
3.1
|
11.1
|
0.8
|
C4D
|
A:HEM904
|
3.2
|
12.0
|
0.2
|
C1D
|
A:HEM904
|
3.2
|
11.2
|
0.2
|
CHD
|
A:HEM904
|
3.2
|
12.7
|
0.8
|
C1A
|
A:HEM904
|
3.3
|
11.4
|
0.8
|
CHC
|
A:HEM904
|
3.3
|
12.3
|
0.8
|
C4A
|
A:HEM904
|
3.3
|
10.9
|
0.8
|
CHB
|
A:HEM904
|
3.3
|
12.8
|
0.2
|
CHC
|
A:HEM904
|
3.3
|
12.0
|
0.2
|
HB2
|
A:CYS345
|
3.4
|
16.6
|
1.0
|
CHA
|
A:HEM904
|
3.5
|
12.4
|
0.2
|
CHA
|
A:HEM904
|
3.5
|
12.1
|
0.8
|
CHD
|
A:HEM904
|
3.5
|
11.1
|
0.2
|
CB
|
A:CYS345
|
3.6
|
13.8
|
1.0
|
CHB
|
A:HEM904
|
3.6
|
11.6
|
0.8
|
HD2
|
A:PRO346
|
3.9
|
17.4
|
1.0
|
HA
|
A:CYS345
|
3.9
|
15.6
|
1.0
|
C3C
|
A:HEM904
|
4.1
|
13.3
|
0.8
|
C2C
|
A:HEM904
|
4.1
|
12.8
|
0.8
|
C2B
|
A:HEM904
|
4.1
|
13.5
|
0.2
|
C3B
|
A:HEM904
|
4.1
|
12.6
|
0.2
|
H
|
A:GLY347
|
4.1
|
18.4
|
1.0
|
C2D
|
A:HEM904
|
4.2
|
13.7
|
0.8
|
C3B
|
A:HEM904
|
4.2
|
13.0
|
0.8
|
HHD
|
A:HEM904
|
4.2
|
15.2
|
0.8
|
C3A
|
A:HEM904
|
4.2
|
13.4
|
0.2
|
HHC
|
A:HEM904
|
4.2
|
14.8
|
0.8
|
C3D
|
A:HEM904
|
4.3
|
13.6
|
0.8
|
C2A
|
A:HEM904
|
4.3
|
13.6
|
0.2
|
HHB
|
A:HEM904
|
4.3
|
15.3
|
0.2
|
C2C
|
A:HEM904
|
4.3
|
12.1
|
0.2
|
C2B
|
A:HEM904
|
4.3
|
12.3
|
0.8
|
HHC
|
A:HEM904
|
4.3
|
14.4
|
0.2
|
HB3
|
A:CYS345
|
4.3
|
16.6
|
1.0
|
C3C
|
A:HEM904
|
4.3
|
11.7
|
0.2
|
CA
|
A:CYS345
|
4.3
|
13.0
|
1.0
|
HB1
|
A:ALA233
|
4.3
|
14.6
|
1.0
|
OG
|
A:SER237
|
4.4
|
13.0
|
1.0
|
C3D
|
A:HEM904
|
4.4
|
11.3
|
0.2
|
C2D
|
A:HEM904
|
4.4
|
11.0
|
0.2
|
HHA
|
A:HEM904
|
4.4
|
14.9
|
0.2
|
HHA
|
A:HEM904
|
4.5
|
14.5
|
0.8
|
HHD
|
A:HEM904
|
4.5
|
13.4
|
0.2
|
C3A
|
A:HEM904
|
4.5
|
11.0
|
0.8
|
C2A
|
A:HEM904
|
4.5
|
11.7
|
0.8
|
HB2
|
A:SER237
|
4.5
|
14.9
|
1.0
|
O
|
A:HOH1391
|
4.5
|
31.0
|
1.0
|
HB3
|
A:SER237
|
4.6
|
14.9
|
1.0
|
HD1
|
A:PHE338
|
4.6
|
15.3
|
1.0
|
HHB
|
A:HEM904
|
4.6
|
13.9
|
0.8
|
HA3
|
A:GLY347
|
4.7
|
18.0
|
1.0
|
CB
|
A:SER237
|
4.7
|
12.4
|
1.0
|
HG
|
A:SER237
|
4.8
|
15.6
|
1.0
|
CD
|
A:PRO346
|
4.8
|
14.5
|
1.0
|
H141
|
A:N55901
|
4.8
|
74.0
|
1.0
|
N
|
A:GLY347
|
4.9
|
15.4
|
1.0
|
HZ
|
A:PHE280
|
5.0
|
15.2
|
1.0
|
|
Reference:
S.Adam,
J.Koehnke.
The Structure of CYP121 in Complex with Inhibitor S2 To Be Published.
Page generated: Wed Aug 7 10:44:18 2024
|