Iron in PDB 6tmf: Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex

The structure of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex also contains other interesting chemical elements:

Magnesium	(Mg)	29 atoms
Zinc	(Zn)	4 atoms

The binding sites of Iron atom in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex (pdb code 6tmf). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex, PDB code: 6tmf:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range: probe atom residue distance (Å) B Occ d:Fe601 b:12.0 occ:1.00 FE1 d:SF4601 0.0 12.0 1.0 S4 d:SF4601 2.3 12.0 1.0 S3 d:SF4601 2.3 12.0 1.0 S2 d:SF4601 2.3 12.0 1.0 FE3 d:SF4601 2.7 12.0 1.0 FE4 d:SF4601 2.7 12.0 1.0 FE2 d:SF4601 2.7 12.0 1.0 SG d:CYS24 2.9 14.5 1.0 CD1 d:ILE34 3.5 16.4 1.0 CB d:CYS24 3.8 14.5 1.0 S1 d:SF4601 3.9 12.0 1.0 CG1 d:ILE34 4.0 16.4 1.0 CB d:ALA33 4.0 16.4 1.0 CA d:CYS24 4.7 14.5 1.0 CD d:PRO25 4.7 13.7 1.0 SG d:CYS51 4.8 13.3 1.0 CG2 d:VAL26 4.9 15.4 1.0 O d:GLY53 4.9 11.0 1.0 CB d:CYS51 4.9 13.3 1.0 CA d:CYS51 5.0 13.3 1.0

Iron binding site 2 out of 8 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range: probe atom residue distance (Å) B Occ d:Fe601 b:12.0 occ:1.00 FE2 d:SF4601 0.0 12.0 1.0 SG d:CYS51 2.2 13.3 1.0 S4 d:SF4601 2.3 12.0 1.0 S3 d:SF4601 2.3 12.0 1.0 S1 d:SF4601 2.3 12.0 1.0 FE1 d:SF4601 2.7 12.0 1.0 FE3 d:SF4601 2.7 12.0 1.0 FE4 d:SF4601 2.7 12.0 1.0 CB d:CYS51 3.0 13.3 1.0 O d:GLY53 3.3 11.0 1.0 CA d:CYS51 3.4 13.3 1.0 N d:ILE52 3.5 12.1 1.0 N d:GLY53 3.6 11.0 1.0 C d:CYS51 3.8 13.3 1.0 S2 d:SF4601 3.9 12.0 1.0 C d:GLY53 4.1 11.0 1.0 CA d:GLY53 4.2 11.0 1.0 C d:ILE52 4.5 12.1 1.0 CA d:ILE52 4.6 12.1 1.0 N d:CYS51 4.7 13.3 1.0 CB d:ALA4 4.7 11.3 1.0 CB d:ALA33 4.8 16.4 1.0 CG1 d:ILE52 4.8 12.1 1.0 O d:CYS51 4.9 13.3 1.0

Iron binding site 3 out of 8 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range: probe atom residue distance (Å) B Occ d:Fe601 b:12.0 occ:1.00 FE3 d:SF4601 0.0 12.0 1.0 S1 d:SF4601 2.3 12.0 1.0 S4 d:SF4601 2.3 12.0 1.0 S2 d:SF4601 2.3 12.0 1.0 FE1 d:SF4601 2.7 12.0 1.0 FE4 d:SF4601 2.7 12.0 1.0 FE2 d:SF4601 2.7 12.0 1.0 SG d:CYS57 2.9 12.1 1.0 CB d:CYS57 3.6 12.1 1.0 CD1 d:ILE34 3.8 16.4 1.0 S3 d:SF4601 3.9 12.0 1.0 O d:GLY53 3.9 11.0 1.0 CB d:ALA4 4.1 11.3 1.0 SG d:CYS51 4.3 13.3 1.0 CG1 d:ILE34 4.4 16.4 1.0 N d:CYS57 4.5 12.1 1.0 CA d:CYS57 4.7 12.1 1.0

Iron binding site 4 out of 8 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range: probe atom residue distance (Å) B Occ d:Fe601 b:12.0 occ:1.00 FE4 d:SF4601 0.0 12.0 1.0 S2 d:SF4601 2.3 12.0 1.0 S1 d:SF4601 2.3 12.0 1.0 S3 d:SF4601 2.3 12.0 1.0 O d:GLY53 2.6 11.0 1.0 FE1 d:SF4601 2.7 12.0 1.0 FE3 d:SF4601 2.7 12.0 1.0 FE2 d:SF4601 2.7 12.0 1.0 SG d:CYS54 2.8 11.1 1.0 C d:GLY53 3.8 11.0 1.0 S4 d:SF4601 3.9 12.0 1.0 CB d:CYS54 4.1 11.1 1.0 N d:GLY55 4.3 10.9 1.0 CD d:PRO25 4.3 13.7 1.0 N d:ILE56 4.6 12.2 1.0 SG d:CYS24 4.6 14.5 1.0 N d:CYS54 4.6 11.1 1.0 C d:CYS54 4.6 11.1 1.0 N d:GLY53 4.6 11.0 1.0 CA d:CYS54 4.7 11.1 1.0 CA d:GLY53 4.7 11.0 1.0 SG d:CYS51 4.7 13.3 1.0 CG1 d:ILE52 4.8 12.1 1.0 CG1 d:ILE56 4.9 12.2 1.0 CB d:ILE56 4.9 12.2 1.0 SG d:CYS57 5.0 12.1 1.0

Iron binding site 5 out of 8 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range: probe atom residue distance (Å) B Occ d:Fe602 b:19.9 occ:1.00 FE1 d:SF4602 0.0 19.9 1.0 S2 d:SF4602 2.3 19.9 1.0 S3 d:SF4602 2.3 19.9 1.0 S4 d:SF4602 2.3 19.9 1.0 FE3 d:SF4602 2.7 19.9 1.0 FE2 d:SF4602 2.7 19.9 1.0 FE4 d:SF4602 2.7 19.9 1.0 SG d:CYS20 3.2 16.4 1.0 CB d:CYS20 3.7 16.4 1.0 S1 d:SF4602 3.9 19.9 1.0 CG d:PRO44 4.1 19.0 1.0 CD1 d:ILE66 4.4 12.7 1.0 SG d:CYS61 4.5 15.2 1.0 N d:CYS20 4.8 16.4 1.0 CD d:PRO44 4.8 19.0 1.0 CA d:CYS20 4.9 16.4 1.0 SG d:CYS11 4.9 21.3 1.0 CB d:PRO44 4.9 19.0 1.0

Iron binding site 6 out of 8 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range: probe atom residue distance (Å) B Occ d:Fe602 b:19.9 occ:1.00 FE2 d:SF4602 0.0 19.9 1.0 S3 d:SF4602 2.3 19.9 1.0 S1 d:SF4602 2.3 19.9 1.0 S4 d:SF4602 2.3 19.9 1.0 FE3 d:SF4602 2.7 19.9 1.0 FE4 d:SF4602 2.7 19.9 1.0 FE1 d:SF4602 2.7 19.9 1.0 CB d:CYS16 2.9 25.1 1.0 SG d:CYS16 3.0 25.1 1.0 S2 d:SF4602 3.9 19.9 1.0 O d:LYS12 4.2 23.0 1.0 CA d:CYS16 4.3 25.1 1.0 CA d:PRO13 4.4 22.4 1.0 CA d:LEU18 4.5 20.1 1.0 C d:LYS12 4.6 23.0 1.0 N d:LEU18 4.6 20.1 1.0 N d:PRO13 4.7 22.4 1.0 SG d:CYS61 4.8 15.2 1.0 N d:LYS12 4.8 23.0 1.0 C d:CYS16 4.9 25.1 1.0

Iron binding site 7 out of 8 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range: probe atom residue distance (Å) B Occ d:Fe602 b:19.9 occ:1.00 FE3 d:SF4602 0.0 19.9 1.0 SG d:CYS61 2.1 15.2 1.0 S4 d:SF4602 2.3 19.9 1.0 S1 d:SF4602 2.3 19.9 1.0 S2 d:SF4602 2.3 19.9 1.0 FE2 d:SF4602 2.7 19.9 1.0 FE1 d:SF4602 2.7 19.9 1.0 FE4 d:SF4602 2.7 19.9 1.0 CB d:CYS61 3.2 15.2 1.0 CA d:CYS61 3.7 15.2 1.0 S3 d:SF4602 3.9 19.9 1.0 CD d:PRO62 4.2 18.3 1.0 O d:TYR63 4.5 21.7 1.0 C d:CYS61 4.5 15.2 1.0 N d:PRO62 4.6 18.3 1.0 CB d:ALA65 4.7 16.0 1.0 CB d:CYS16 4.8 25.1 1.0 CD1 d:ILE66 4.8 12.7 1.0 N d:CYS61 4.9 15.2 1.0

Iron binding site 8 out of 8 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range: probe atom residue distance (Å) B Occ d:Fe602 b:19.9 occ:1.00 FE4 d:SF4602 0.0 19.9 1.0 S1 d:SF4602 2.3 19.9 1.0 S2 d:SF4602 2.3 19.9 1.0 S3 d:SF4602 2.3 19.9 1.0 FE2 d:SF4602 2.7 19.9 1.0 FE3 d:SF4602 2.7 19.9 1.0 FE1 d:SF4602 2.7 19.9 1.0 SG d:CYS11 2.9 21.3 1.0 CB d:CYS11 3.2 21.3 1.0 CA d:CYS11 3.4 21.3 1.0 N d:LYS12 3.7 23.0 1.0 S4 d:SF4602 3.9 19.9 1.0 C d:CYS11 4.0 21.3 1.0 SG d:CYS61 4.3 15.2 1.0 N d:CYS11 4.6 21.3 1.0 CB d:ALA65 4.7 16.0 1.0 C d:LYS12 4.7 23.0 1.0 CG d:PRO44 4.8 19.0 1.0 N d:PRO13 4.8 22.4 1.0 CA d:LYS12 4.8 23.0 1.0 CD d:PRO44 4.9 19.0 1.0 O d:LYS12 5.0 23.0 1.0

E.Nuerenberg Goloub, H.Kratzat, H.Heinemann, A.Heuer, P.Koetter, O.Berninghausen, T.Becker, R.Tampe, R.Beckmann. Molecular Analysis of the Ribosome Recycling Factor ABCE1 Bound to the 30S Post-Splitting Complex Embo J. 2020.
ISSN: ESSN 1460-2075
DOI: 10.15252/EMBJ.2019103788