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Iron in PDB 6tp9: C-Type Cytochrome Nirc

Protein crystallography data

The structure of C-Type Cytochrome Nirc, PDB code: 6tp9 was solved by T.Kluenemann, S.Henke, W.Blankenfeldt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.31 / 2.19
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 78.017, 81.366, 198.314, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 24.7

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Iron atom in the C-Type Cytochrome Nirc (pdb code 6tp9). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 11 binding sites of Iron where determined in the C-Type Cytochrome Nirc, PDB code: 6tp9:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 11 in 6tp9

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Iron binding site 1 out of 11 in the C-Type Cytochrome Nirc


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of C-Type Cytochrome Nirc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe101

b:24.6
occ:1.00
FE A:HEC101 0.0 24.6 1.0
NE2 A:HIS24 2.0 28.7 1.0
NC A:HEC101 2.0 18.2 1.0
NB A:HEC101 2.0 17.3 1.0
ND A:HEC101 2.1 24.5 1.0
NA A:HEC101 2.1 25.0 1.0
SD C:MET62 2.3 17.3 1.0
CE1 A:HIS24 2.8 29.0 1.0
HE1 A:HIS24 2.9 34.8 1.0
C4C A:HEC101 3.0 21.7 1.0
C1C A:HEC101 3.1 17.9 1.0
C1D A:HEC101 3.1 26.7 1.0
C4B A:HEC101 3.1 20.1 1.0
C1B A:HEC101 3.1 17.2 1.0
C4D A:HEC101 3.1 21.8 1.0
C4A A:HEC101 3.1 24.4 1.0
C1A A:HEC101 3.1 24.4 1.0
CD2 A:HIS24 3.1 29.6 1.0
CHD A:HEC101 3.4 26.1 1.0
HD2 A:HIS24 3.4 35.6 1.0
CHC A:HEC101 3.4 19.3 1.0
CHA A:HEC101 3.4 20.9 1.0
CHB A:HEC101 3.4 23.8 1.0
CE C:MET62 3.5 17.2 1.0
CG C:MET62 3.5 24.2 1.0
HG2 C:MET62 3.5 29.1 1.0
HE2 C:MET62 3.6 20.7 1.0
HE1 C:MET62 3.6 20.7 1.0
HB2 C:MET62 3.6 26.6 1.0
HA C:MET62 4.0 23.0 1.0
CB C:MET62 4.0 22.1 1.0
ND1 A:HIS24 4.0 29.3 1.0
CG A:HIS24 4.2 28.7 1.0
C3C A:HEC101 4.3 22.6 1.0
C2C A:HEC101 4.3 20.7 1.0
C3B A:HEC101 4.3 20.6 1.0
C2B A:HEC101 4.3 16.4 1.0
C3A A:HEC101 4.3 22.6 1.0
C2D A:HEC101 4.3 24.5 1.0
C2A A:HEC101 4.3 23.5 1.0
C3D A:HEC101 4.3 21.8 1.0
HE3 C:MET62 4.3 20.7 1.0
HG3 C:MET62 4.3 29.1 1.0
HD11 C:LEU36 4.3 18.9 1.0
HHD A:HEC101 4.4 31.4 1.0
HHA A:HEC101 4.4 25.1 1.0
HHC A:HEC101 4.4 23.2 1.0
HHB A:HEC101 4.4 28.6 1.0
CA C:MET62 4.6 19.1 1.0
HD2 C:PRO34 4.6 17.0 1.0
HD2 C:PRO63 4.6 18.8 1.0
HD21 C:LEU36 4.8 20.5 1.0
HD1 A:HIS24 4.8 35.2 1.0
HE1 C:TRP65 4.8 14.7 1.0
HA3 C:GLY33 4.8 32.3 1.0
HB3 C:MET62 4.9 26.6 1.0

Iron binding site 2 out of 11 in 6tp9

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Iron binding site 2 out of 11 in the C-Type Cytochrome Nirc


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of C-Type Cytochrome Nirc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe102

b:25.0
occ:1.00
FE A:HEC102 0.0 25.0 1.0
NE2 C:HIS24 2.0 23.4 1.0
NC A:HEC102 2.0 15.5 1.0
NB A:HEC102 2.0 18.7 1.0
NA A:HEC102 2.1 22.9 1.0
ND A:HEC102 2.1 15.7 1.0
SD A:MET62 2.2 24.7 1.0
CE1 C:HIS24 2.9 25.1 1.0
HE1 C:HIS24 3.0 30.1 1.0
C1C A:HEC102 3.0 18.9 1.0
C4B A:HEC102 3.1 19.1 1.0
C4C A:HEC102 3.1 18.7 1.0
C1A A:HEC102 3.1 28.6 1.0
C4D A:HEC102 3.1 17.5 1.0
C1B A:HEC102 3.1 24.0 1.0
C1D A:HEC102 3.1 14.8 1.0
CD2 C:HIS24 3.1 23.2 1.0
C4A A:HEC102 3.1 23.3 1.0
CE A:MET62 3.3 23.2 1.0
HD2 C:HIS24 3.3 27.9 1.0
HE1 A:MET62 3.4 27.9 1.0
CHC A:HEC102 3.4 20.7 1.0
CHA A:HEC102 3.4 25.0 1.0
CHD A:HEC102 3.4 15.4 1.0
HE2 A:MET62 3.5 27.9 1.0
CHB A:HEC102 3.5 26.6 1.0
CG A:MET62 3.6 24.9 1.0
HG2 A:MET62 3.7 29.9 1.0
HB2 A:MET62 3.8 24.7 1.0
HA A:MET62 4.0 21.9 1.0
HD11 A:LEU36 4.0 33.2 1.0
ND1 C:HIS24 4.0 24.6 1.0
CG C:HIS24 4.2 22.9 1.0
HE3 A:MET62 4.2 27.9 1.0
CB A:MET62 4.2 20.6 1.0
C2C A:HEC102 4.3 17.7 1.0
C3C A:HEC102 4.3 20.2 1.0
C3B A:HEC102 4.3 22.7 1.0
C2B A:HEC102 4.3 26.4 1.0
C2A A:HEC102 4.3 23.3 1.0
C3A A:HEC102 4.3 20.3 1.0
C3D A:HEC102 4.3 16.4 1.0
C2D A:HEC102 4.3 14.5 1.0
HG3 A:MET62 4.4 29.9 1.0
HHC A:HEC102 4.4 24.9 1.0
HHA A:HEC102 4.4 30.0 1.0
HHD A:HEC102 4.4 18.6 1.0
HD2 A:PRO63 4.4 23.9 1.0
HHB A:HEC102 4.4 32.0 1.0
HD21 A:LEU36 4.6 33.5 1.0
CA A:MET62 4.6 18.2 1.0
HD1 C:HIS24 4.8 29.5 1.0
HE1 A:TRP65 4.8 19.9 1.0
HD3 A:PRO63 4.8 23.9 1.0
HD2 A:PRO34 4.9 24.3 1.0
CD1 A:LEU36 5.0 27.6 1.0

Iron binding site 3 out of 11 in 6tp9

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Iron binding site 3 out of 11 in the C-Type Cytochrome Nirc


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of C-Type Cytochrome Nirc within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe101

b:26.4
occ:1.00
FE B:HEC101 0.0 26.4 1.0
NE2 B:HIS24 2.0 16.1 1.0
NB B:HEC101 2.0 11.9 1.0
ND B:HEC101 2.1 13.5 1.0
NC B:HEC101 2.1 17.2 1.0
NA B:HEC101 2.1 21.1 1.0
SD F:MET62 2.2 21.0 1.0
CE1 B:HIS24 2.8 17.3 1.0
HE1 B:HIS24 3.0 20.8 1.0
C4B B:HEC101 3.0 17.6 1.0
C4D B:HEC101 3.0 17.5 1.0
C1B B:HEC101 3.1 16.2 1.0
CD2 B:HIS24 3.1 18.6 1.0
C1D B:HEC101 3.1 17.3 1.0
C1C B:HEC101 3.1 15.6 1.0
C1A B:HEC101 3.1 21.0 1.0
C4C B:HEC101 3.1 17.4 1.0
C4A B:HEC101 3.1 22.5 1.0
HD2 B:HIS24 3.3 22.4 1.0
CE F:MET62 3.3 22.5 1.0
HE2 F:MET62 3.4 27.0 1.0
CHA B:HEC101 3.4 20.8 1.0
CHC B:HEC101 3.4 16.6 1.0
CHD B:HEC101 3.4 19.5 1.0
CHB B:HEC101 3.4 20.5 1.0
HE1 F:MET62 3.5 27.0 1.0
CG F:MET62 3.6 24.5 1.0
HG2 F:MET62 3.7 29.5 1.0
HB2 F:MET62 3.8 24.5 1.0
ND1 B:HIS24 4.0 17.8 1.0
HA F:MET62 4.1 27.0 1.0
CG B:HIS24 4.1 17.1 1.0
CB F:MET62 4.2 20.4 1.0
HE3 F:MET62 4.2 27.0 1.0
C3B B:HEC101 4.3 20.7 1.0
C2B B:HEC101 4.3 18.7 1.0
C3D B:HEC101 4.3 17.5 1.0
C2C B:HEC101 4.3 14.6 1.0
C2D B:HEC101 4.3 14.2 1.0
C3C B:HEC101 4.3 13.8 1.0
HD11 F:LEU36 4.3 20.9 1.0
C2A B:HEC101 4.3 18.1 1.0
C3A B:HEC101 4.3 20.8 1.0
HG3 F:MET62 4.3 29.5 1.0
HHA B:HEC101 4.4 25.0 1.0
HHC B:HEC101 4.4 20.0 1.0
HHD B:HEC101 4.4 23.5 1.0
HHB B:HEC101 4.4 24.7 1.0
HD2 F:PRO63 4.5 24.7 1.0
HD2 F:PRO34 4.5 19.5 1.0
CA F:MET62 4.7 22.5 1.0
HA3 F:GLY33 4.7 20.1 1.0
HD1 B:HIS24 4.8 21.3 1.0
HE1 F:TRP65 4.8 21.9 1.0
HB2 B:CYS23 4.9 27.2 1.0
HD21 F:LEU36 4.9 21.4 1.0

Iron binding site 4 out of 11 in 6tp9

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Iron binding site 4 out of 11 in the C-Type Cytochrome Nirc


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of C-Type Cytochrome Nirc within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe102

b:21.3
occ:1.00
FE B:HEC102 0.0 21.3 1.0
NE2 F:HIS24 2.0 18.4 1.0
NB B:HEC102 2.0 16.0 1.0
ND B:HEC102 2.0 21.7 1.0
NA B:HEC102 2.1 24.0 1.0
NC B:HEC102 2.1 16.3 1.0
SD B:MET62 2.3 18.8 1.0
CE1 F:HIS24 2.8 20.3 1.0
HE1 F:HIS24 2.9 24.4 1.0
C4D B:HEC102 3.0 29.1 1.0
C4B B:HEC102 3.0 15.9 1.0
C1A B:HEC102 3.0 27.5 1.0
C1C B:HEC102 3.1 12.5 1.0
C1D B:HEC102 3.1 22.1 1.0
C1B B:HEC102 3.1 22.6 1.0
C4C B:HEC102 3.1 19.1 1.0
C4A B:HEC102 3.1 24.1 1.0
CD2 F:HIS24 3.1 19.8 1.0
CE B:MET62 3.3 25.6 1.0
HE2 B:MET62 3.3 30.8 1.0
CHA B:HEC102 3.4 32.3 1.0
CHC B:HEC102 3.4 17.0 1.0
HD2 F:HIS24 3.4 23.9 1.0
CHD B:HEC102 3.5 20.3 1.0
CHB B:HEC102 3.5 23.0 1.0
HE1 B:MET62 3.5 30.8 1.0
CG B:MET62 3.6 18.5 1.0
HG2 B:MET62 3.6 22.3 1.0
HB2 B:MET62 3.7 22.7 1.0
ND1 F:HIS24 4.0 17.5 1.0
HA B:MET62 4.0 24.8 1.0
HD11 B:LEU36 4.1 13.6 1.0
CB B:MET62 4.1 18.9 1.0
CG F:HIS24 4.2 16.7 1.0
HE3 B:MET62 4.2 30.8 1.0
C3B B:HEC102 4.3 16.3 1.0
C3D B:HEC102 4.3 23.3 1.0
C2C B:HEC102 4.3 12.9 1.0
C2A B:HEC102 4.3 24.6 1.0
C2B B:HEC102 4.3 20.5 1.0
C2D B:HEC102 4.3 20.5 1.0
C3A B:HEC102 4.3 22.5 1.0
C3C B:HEC102 4.3 19.1 1.0
HG3 B:MET62 4.3 22.3 1.0
HHA B:HEC102 4.3 38.8 1.0
HHC B:HEC102 4.4 20.4 1.0
HHD B:HEC102 4.4 24.4 1.0
HHB B:HEC102 4.5 27.7 1.0
CA B:MET62 4.6 20.7 1.0
HD2 B:PRO63 4.7 32.0 1.0
HD1 F:HIS24 4.7 21.1 1.0
HD2 B:PRO34 4.8 20.5 1.0
HD21 B:LEU36 4.8 13.5 1.0
HE1 B:TRP65 4.9 22.5 1.0
HG2 B:PRO34 5.0 20.9 1.0
HB2 F:CYS23 5.0 18.5 1.0
HG22 B:THR52 5.0 25.5 1.0
HD3 B:PRO63 5.0 32.0 1.0

Iron binding site 5 out of 11 in 6tp9

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Iron binding site 5 out of 11 in the C-Type Cytochrome Nirc


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of C-Type Cytochrome Nirc within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe101

b:25.9
occ:1.00
FE D:HEC101 0.0 25.9 1.0
NE2 D:HIS24 2.0 28.7 1.0
NA D:HEC101 2.0 22.6 1.0
NC D:HEC101 2.0 25.1 1.0
NB D:HEC101 2.1 23.2 1.0
ND D:HEC101 2.1 25.3 1.0
SD J:MET62 2.3 37.8 1.0
CE1 D:HIS24 2.8 31.7 1.0
HE1 D:HIS24 2.9 38.1 1.0
C4C D:HEC101 3.1 24.9 1.0
C1A D:HEC101 3.1 26.7 1.0
C4A D:HEC101 3.1 22.8 1.0
C1C D:HEC101 3.1 26.9 1.0
C1B D:HEC101 3.1 21.8 1.0
C1D D:HEC101 3.1 26.0 1.0
C4B D:HEC101 3.1 21.8 1.0
C4D D:HEC101 3.1 22.4 1.0
CD2 D:HIS24 3.1 31.2 1.0
CE J:MET62 3.3 35.8 1.0
HE2 J:MET62 3.3 43.0 1.0
HE1 J:MET62 3.3 43.0 1.0
CHD D:HEC101 3.4 24.4 1.0
HD2 D:HIS24 3.4 37.5 1.0
CHA D:HEC101 3.4 25.5 1.0
CHB D:HEC101 3.4 23.3 1.0
CHC D:HEC101 3.4 24.7 1.0
CG J:MET62 3.7 35.0 1.0
HG2 J:MET62 3.7 42.0 1.0
HB2 J:MET62 3.9 39.4 1.0
ND1 D:HIS24 4.0 31.8 1.0
HA J:MET62 4.0 40.6 1.0
HE3 J:MET62 4.1 43.0 1.0
CG D:HIS24 4.2 31.7 1.0
HD11 J:LEU36 4.2 30.8 1.0
CB J:MET62 4.3 32.8 1.0
C2C D:HEC101 4.3 25.1 1.0
C3C D:HEC101 4.3 29.4 1.0
C2A D:HEC101 4.3 24.6 1.0
C3A D:HEC101 4.3 22.9 1.0
C2B D:HEC101 4.3 19.6 1.0
C3B D:HEC101 4.3 19.8 1.0
C2D D:HEC101 4.3 23.4 1.0
C3D D:HEC101 4.3 21.4 1.0
HHD D:HEC101 4.4 29.4 1.0
HD2 J:PRO63 4.4 32.3 1.0
HHA D:HEC101 4.4 30.7 1.0
HHB D:HEC101 4.4 28.0 1.0
HG3 J:MET62 4.4 42.0 1.0
HHC D:HEC101 4.4 29.7 1.0
HD2 J:PRO34 4.6 38.4 1.0
HE1 J:TRP65 4.6 38.0 1.0
HD21 J:LEU36 4.7 37.6 1.0
CA J:MET62 4.7 33.8 1.0
HD1 D:HIS24 4.7 38.1 1.0
HA3 J:GLY33 4.8 34.5 1.0

Iron binding site 6 out of 11 in 6tp9

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Iron binding site 6 out of 11 in the C-Type Cytochrome Nirc


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of C-Type Cytochrome Nirc within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe102

b:23.4
occ:1.00
FE D:HEC102 0.0 23.4 1.0
NE2 J:HIS24 2.0 22.7 1.0
NC D:HEC102 2.0 19.0 1.0
NB D:HEC102 2.0 21.4 1.0
NA D:HEC102 2.1 24.3 1.0
ND D:HEC102 2.1 22.0 1.0
SD D:MET62 2.3 23.4 1.0
CE1 J:HIS24 2.8 25.3 1.0
HE1 J:HIS24 2.9 30.4 1.0
C1C D:HEC102 3.0 21.4 1.0
C4C D:HEC102 3.0 22.4 1.0
C4B D:HEC102 3.1 22.6 1.0
C1B D:HEC102 3.1 21.9 1.0
C1D D:HEC102 3.1 19.6 1.0
C4A D:HEC102 3.1 26.7 1.0
C4D D:HEC102 3.1 26.3 1.0
C1A D:HEC102 3.1 27.2 1.0
CD2 J:HIS24 3.1 25.5 1.0
CHC D:HEC102 3.4 20.9 1.0
CHD D:HEC102 3.4 20.6 1.0
HD2 J:HIS24 3.4 30.6 1.0
CHB D:HEC102 3.4 25.1 1.0
CHA D:HEC102 3.5 28.4 1.0
CE D:MET62 3.5 28.1 1.0
HE1 D:MET62 3.6 33.7 1.0
HB2 D:MET62 3.6 23.9 1.0
CG D:MET62 3.6 21.5 1.0
HE2 D:MET62 3.8 33.7 1.0
HG2 D:MET62 3.8 25.9 1.0
ND1 J:HIS24 4.0 25.4 1.0
HA D:MET62 4.0 26.0 1.0
CB D:MET62 4.1 19.9 1.0
CG J:HIS24 4.2 26.6 1.0
HD11 D:LEU36 4.2 39.1 1.0
C2C D:HEC102 4.2 23.6 1.0
C3C D:HEC102 4.2 26.2 1.0
C3B D:HEC102 4.3 23.7 1.0
C2B D:HEC102 4.3 24.4 1.0
C2D D:HEC102 4.3 23.0 1.0
C3A D:HEC102 4.3 28.1 1.0
C2A D:HEC102 4.3 29.4 1.0
C3D D:HEC102 4.3 24.2 1.0
HE3 D:MET62 4.3 33.7 1.0
HHD D:HEC102 4.4 24.7 1.0
HHC D:HEC102 4.4 25.1 1.0
HHA D:HEC102 4.4 34.2 1.0
HHB D:HEC102 4.4 30.2 1.0
HG3 D:MET62 4.4 25.9 1.0
HD2 D:PRO63 4.5 23.4 1.0
HD2 D:PRO34 4.5 40.4 1.0
CA D:MET62 4.6 21.7 1.0
HE1 D:TRP65 4.7 20.5 1.0
HD21 D:LEU36 4.7 36.8 1.0
HD1 J:HIS24 4.7 30.6 1.0
HB3 D:MET62 4.9 23.9 1.0

Iron binding site 7 out of 11 in 6tp9

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Iron binding site 7 out of 11 in the C-Type Cytochrome Nirc


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of C-Type Cytochrome Nirc within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe101

b:26.0
occ:1.00
FE E:HEC101 0.0 26.0 1.0
NE2 E:HIS24 2.0 20.8 1.0
NB E:HEC101 2.0 19.8 1.0
NC E:HEC101 2.1 18.9 1.0
NA E:HEC101 2.1 23.1 1.0
ND E:HEC101 2.1 24.7 1.0
SD K:MET62 2.3 32.2 1.0
CE1 E:HIS24 2.9 21.9 1.0
CD2 E:HIS24 3.0 21.6 1.0
HE1 E:HIS24 3.0 26.4 1.0
C4B E:HEC101 3.1 17.1 1.0
C4D E:HEC101 3.1 24.0 1.0
C1C E:HEC101 3.1 18.8 1.0
C1B E:HEC101 3.1 18.1 1.0
C4C E:HEC101 3.1 20.7 1.0
C1A E:HEC101 3.1 26.5 1.0
C1D E:HEC101 3.1 24.7 1.0
C4A E:HEC101 3.1 19.0 1.0
HD2 E:HIS24 3.3 26.0 1.0
CE K:MET62 3.4 32.5 1.0
CHA E:HEC101 3.4 25.4 1.0
CHC E:HEC101 3.4 21.5 1.0
HE1 K:MET62 3.4 39.0 1.0
CHD E:HEC101 3.4 23.3 1.0
CHB E:HEC101 3.5 19.2 1.0
HE2 K:MET62 3.5 39.0 1.0
CG K:MET62 3.6 36.5 1.0
HB2 K:MET62 3.7 42.9 1.0
HG2 K:MET62 3.7 43.8 1.0
ND1 E:HIS24 4.0 21.3 1.0
HA K:MET62 4.1 38.8 1.0
CB K:MET62 4.1 35.7 1.0
CG E:HIS24 4.1 21.9 1.0
HE3 K:MET62 4.2 39.0 1.0
C3B E:HEC101 4.3 13.7 1.0
C2B E:HEC101 4.3 17.9 1.0
C2C E:HEC101 4.3 14.1 1.0
C3C E:HEC101 4.3 19.4 1.0
C3A E:HEC101 4.3 20.6 1.0
C2A E:HEC101 4.3 24.1 1.0
C3D E:HEC101 4.3 22.9 1.0
C2D E:HEC101 4.3 25.6 1.0
HG3 K:MET62 4.4 43.8 1.0
HHA E:HEC101 4.4 30.5 1.0
HHC E:HEC101 4.4 25.8 1.0
HHD E:HEC101 4.4 28.0 1.0
HHB E:HEC101 4.4 23.1 1.0
HD11 K:LEU36 4.4 21.6 1.0
HD2 K:PRO63 4.5 37.5 1.0
CA K:MET62 4.7 32.3 1.0
HD21 K:LEU36 4.8 25.5 1.0
HD1 E:HIS24 4.8 25.6 1.0
HB2 E:CYS23 4.8 23.0 1.0
HE1 K:TRP65 4.8 16.0 1.0
HB3 K:MET62 5.0 42.9 1.0
HA3 K:GLY33 5.0 30.3 1.0
HD2 K:PRO34 5.0 26.1 1.0

Iron binding site 8 out of 11 in 6tp9

Go back to Iron Binding Sites List in 6tp9
Iron binding site 8 out of 11 in the C-Type Cytochrome Nirc


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of C-Type Cytochrome Nirc within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe102

b:24.1
occ:1.00
FE E:HEC102 0.0 24.1 1.0
NE2 K:HIS24 2.0 22.1 1.0
NB E:HEC102 2.0 23.6 1.0
NA E:HEC102 2.1 22.9 1.0
ND E:HEC102 2.1 25.8 1.0
NC E:HEC102 2.1 25.7 1.0
SD E:MET62 2.3 18.9 1.0
CE1 K:HIS24 2.8 24.1 1.0
HE1 K:HIS24 3.0 29.0 1.0
C1B E:HEC102 3.0 22.0 1.0
C4A E:HEC102 3.0 24.4 1.0
C1D E:HEC102 3.1 24.4 1.0
C4B E:HEC102 3.1 27.0 1.0
CD2 K:HIS24 3.1 23.6 1.0
C4C E:HEC102 3.1 23.2 1.0
C1A E:HEC102 3.1 24.9 1.0
C4D E:HEC102 3.1 27.9 1.0
C1C E:HEC102 3.1 26.4 1.0
HD2 K:HIS24 3.4 28.4 1.0
CHB E:HEC102 3.4 24.4 1.0
CHD E:HEC102 3.4 23.5 1.0
CHC E:HEC102 3.5 29.3 1.0
CHA E:HEC102 3.5 27.2 1.0
CG E:MET62 3.5 24.0 1.0
HB2 E:MET62 3.5 28.5 1.0
HG2 E:MET62 3.6 28.8 1.0
CE E:MET62 3.6 19.1 1.0
HE1 E:MET62 3.7 23.0 1.0
HE2 E:MET62 3.7 23.0 1.0
HA E:MET62 3.8 29.9 1.0
CB E:MET62 4.0 23.7 1.0
ND1 K:HIS24 4.0 22.1 1.0
CG K:HIS24 4.1 24.4 1.0
HD2 E:PRO63 4.2 24.8 1.0
C2B E:HEC102 4.3 21.1 1.0
C3B E:HEC102 4.3 23.5 1.0
C3A E:HEC102 4.3 20.9 1.0
HG3 E:MET62 4.3 28.8 1.0
C2D E:HEC102 4.3 25.3 1.0
C3C E:HEC102 4.3 22.0 1.0
C2A E:HEC102 4.3 22.4 1.0
C2C E:HEC102 4.3 20.0 1.0
HD11 E:LEU36 4.3 35.5 1.0
C3D E:HEC102 4.3 30.5 1.0
HHB E:HEC102 4.4 29.3 1.0
HE3 E:MET62 4.4 23.0 1.0
HHD E:HEC102 4.4 28.2 1.0
CA E:MET62 4.4 24.9 1.0
HHA E:HEC102 4.4 32.7 1.0
HHC E:HEC102 4.4 35.3 1.0
HD2 E:PRO34 4.7 48.5 1.0
HD1 K:HIS24 4.7 26.6 1.0
HE1 E:TRP65 4.8 23.3 1.0
HB2 K:CYS23 4.8 26.3 1.0
HB3 E:MET62 4.8 28.5 1.0
HD21 E:LEU36 4.9 39.5 1.0
HD3 E:PRO63 5.0 24.8 1.0

Iron binding site 9 out of 11 in 6tp9

Go back to Iron Binding Sites List in 6tp9
Iron binding site 9 out of 11 in the C-Type Cytochrome Nirc


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of C-Type Cytochrome Nirc within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe101

b:18.6
occ:1.00
FE G:HEC101 0.0 18.6 1.0
NE2 G:HIS24 1.9 16.3 1.0
NB G:HEC101 2.0 15.2 1.0
NA G:HEC101 2.0 20.8 1.0
NC G:HEC101 2.1 22.4 1.0
ND G:HEC101 2.1 17.7 1.0
SD G:MET62 2.3 21.2 1.0
CE1 G:HIS24 2.6 18.6 1.0
HE1 G:HIS24 2.7 22.3 1.0
C4B G:HEC101 3.0 16.6 1.0
C1B G:HEC101 3.0 16.6 1.0
C1A G:HEC101 3.1 18.9 1.0
C4A G:HEC101 3.1 22.8 1.0
C1C G:HEC101 3.1 18.0 1.0
C4D G:HEC101 3.1 17.2 1.0
C4C G:HEC101 3.1 22.5 1.0
C1D G:HEC101 3.1 15.9 1.0
CD2 G:HIS24 3.1 17.9 1.0
CE G:MET62 3.3 20.8 1.0
HE1 G:MET62 3.4 25.0 1.0
CHC G:HEC101 3.4 18.8 1.0
CHB G:HEC101 3.4 19.6 1.0
CHA G:HEC101 3.4 14.6 1.0
HE2 G:MET62 3.4 25.0 1.0
CHD G:HEC101 3.5 21.4 1.0
HD2 G:HIS24 3.5 21.6 1.0
CG G:MET62 3.6 20.3 1.0
HG2 G:MET62 3.7 24.4 1.0
HB2 G:MET62 3.8 16.7 1.0
ND1 G:HIS24 3.9 14.4 1.0
CG G:HIS24 4.1 15.2 1.0
HA G:MET62 4.1 18.5 1.0
CB G:MET62 4.2 13.9 1.0
HE3 G:MET62 4.2 25.0 1.0
C3B G:HEC101 4.2 15.1 1.0
C2B G:HEC101 4.2 17.0 1.0
C2A G:HEC101 4.3 21.9 1.0
C2C G:HEC101 4.3 14.8 1.0
C3A G:HEC101 4.3 23.8 1.0
C3C G:HEC101 4.3 19.1 1.0
C3D G:HEC101 4.3 13.2 1.0
C2D G:HEC101 4.3 8.3 1.0
HHC G:HEC101 4.4 22.5 1.0
HHA G:HEC101 4.4 17.6 1.0
HG3 G:MET62 4.4 24.4 1.0
HHB G:HEC101 4.4 23.5 1.0
HHD G:HEC101 4.4 25.7 1.0
HD2 G:PRO63 4.5 17.0 1.0
HD11 G:LEU36 4.5 33.2 1.0
HD1 G:HIS24 4.6 17.4 1.0
HD2 G:PRO34 4.6 11.9 1.0
CA G:MET62 4.7 15.4 1.0
HD21 G:LEU36 4.8 26.7 1.0
HA3 G:GLY33 4.9 25.5 1.0
HE1 G:TRP65 4.9 25.9 1.0

Iron binding site 10 out of 11 in 6tp9

Go back to Iron Binding Sites List in 6tp9
Iron binding site 10 out of 11 in the C-Type Cytochrome Nirc


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of C-Type Cytochrome Nirc within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe101

b:23.5
occ:1.00
FE H:HEC101 0.0 23.5 1.0
NE2 H:HIS24 2.0 25.2 1.0
NC H:HEC101 2.0 21.6 1.0
NA H:HEC101 2.0 25.8 1.0
NB H:HEC101 2.1 19.1 1.0
ND H:HEC101 2.1 25.0 1.0
SD I:MET62 2.3 26.5 1.0
CE1 H:HIS24 2.8 29.7 1.0
HE1 H:HIS24 2.9 35.7 1.0
C1A H:HEC101 3.0 28.4 1.0
C1C H:HEC101 3.0 21.7 1.0
C4D H:HEC101 3.0 28.3 1.0
C4B H:HEC101 3.1 19.3 1.0
C4C H:HEC101 3.1 23.9 1.0
C1D H:HEC101 3.1 24.5 1.0
C4A H:HEC101 3.1 26.8 1.0
C1B H:HEC101 3.1 22.2 1.0
CD2 H:HIS24 3.1 26.7 1.0
HE1 I:MET62 3.4 34.2 1.0
CHA H:HEC101 3.4 28.4 1.0
CE I:MET62 3.4 28.5 1.0
CHC H:HEC101 3.4 21.2 1.0
HD2 H:HIS24 3.4 32.0 1.0
CHD H:HEC101 3.4 21.5 1.0
CHB H:HEC101 3.5 23.5 1.0
HE2 I:MET62 3.7 34.2 1.0
CG I:MET62 3.7 32.6 1.0
HG2 I:MET62 3.8 39.2 1.0
HB2 I:MET62 3.8 36.5 1.0
ND1 H:HIS24 4.0 26.8 1.0
CG H:HIS24 4.2 24.0 1.0
HA I:MET62 4.2 34.1 1.0
HE3 I:MET62 4.2 34.2 1.0
C2C H:HEC101 4.3 20.3 1.0
CB I:MET62 4.3 30.4 1.0
C2A H:HEC101 4.3 30.2 1.0
C3C H:HEC101 4.3 22.6 1.0
HD11 I:LEU36 4.3 31.1 1.0
C3B H:HEC101 4.3 22.1 1.0
C3A H:HEC101 4.3 26.6 1.0
C3D H:HEC101 4.3 28.5 1.0
C2B H:HEC101 4.3 20.7 1.0
C2D H:HEC101 4.3 27.2 1.0
HHA H:HEC101 4.3 34.1 1.0
HHC H:HEC101 4.4 25.5 1.0
HHD H:HEC101 4.4 25.9 1.0
HHB H:HEC101 4.5 28.3 1.0
HG3 I:MET62 4.5 39.2 1.0
HD2 I:PRO63 4.5 29.2 1.0
HD1 H:HIS24 4.7 32.2 1.0
HA3 I:GLY33 4.8 42.3 1.0
HB2 H:CYS23 4.8 22.2 1.0
CA I:MET62 4.8 28.4 1.0
HE1 I:TRP65 4.8 29.8 1.0
HG22 I:THR52 4.9 40.2 1.0
HD21 I:LEU36 4.9 29.1 1.0

Reference:

T.Klunemann, S.Henke, W.Blankenfeldt. The Crystal Structure of the Heme D1BIOSYNTHESIS-Associated Small C-Type Cytochrome Nirc Reveals Mixed Oligomeric States in Crystallo. Acta Crystallogr D Struct V. 76 375 2020BIOL.
ISSN: ISSN 2059-7983
PubMed: 32254062
DOI: 10.1107/S2059798320003101
Page generated: Wed Aug 7 11:30:04 2024

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