Atomistry » Iron » PDB 6tjv-6u87 » 6txi
Atomistry »
  Iron »
    PDB 6tjv-6u87 »
      6txi »

Iron in PDB 6txi: Crystal Structure of Thermotoga Maritima E65A Ferritin

Enzymatic activity of Crystal Structure of Thermotoga Maritima E65A Ferritin

All present enzymatic activity of Crystal Structure of Thermotoga Maritima E65A Ferritin:
1.16.3.2;

Protein crystallography data

The structure of Crystal Structure of Thermotoga Maritima E65A Ferritin, PDB code: 6txi was solved by P.Wilk, P.Grudnik, M.Kumar, J.Heddle, S.Chakraborti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.94 / 1.76
Space group H 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 175.7, 175.7, 353.568, 90, 90, 120
R / Rfree (%) 18 / 20.5

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Thermotoga Maritima E65A Ferritin (pdb code 6txi). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Crystal Structure of Thermotoga Maritima E65A Ferritin, PDB code: 6txi:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 6txi

Go back to Iron Binding Sites List in 6txi
Iron binding site 1 out of 8 in the Crystal Structure of Thermotoga Maritima E65A Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Thermotoga Maritima E65A Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe205

b:47.7
occ:0.38
OE1 A:GLU52 1.9 47.6 1.0
OE1 A:GLU19 2.2 47.4 1.0
ND1 A:HIS55 2.4 54.8 1.0
O A:HOH343 2.5 92.0 1.0
CD A:GLU52 2.9 38.1 1.0
CD A:GLU19 3.2 54.0 1.0
CE1 A:HIS55 3.3 51.8 1.0
HE1 A:HIS55 3.3 62.2 1.0
OE2 A:GLU52 3.3 49.7 1.0
OE2 A:GLU19 3.5 64.5 1.0
CG A:HIS55 3.5 44.1 1.0
HB2 A:HIS55 3.5 40.5 1.0
HA A:GLU52 3.6 38.0 1.0
HG11 A:VAL99 3.7 51.2 1.0
HB3 A:HIS55 3.7 40.5 1.0
CB A:HIS55 3.8 33.7 1.0
HB3 A:GLU52 4.1 38.3 1.0
OE1 A:GLN129 4.2 37.4 1.0
CG A:GLU52 4.2 47.5 1.0
CA A:GLU52 4.4 31.6 1.0
NE2 A:HIS55 4.4 41.9 1.0
CB A:GLU52 4.5 31.9 1.0
HB3 A:GLU19 4.5 36.0 1.0
HG A:SER22 4.5 50.2 1.0
CD2 A:HIS55 4.5 42.6 1.0
CG A:GLU19 4.6 49.8 1.0
CG1 A:VAL99 4.6 42.6 1.0
HG3 A:GLU52 4.6 57.0 1.0
HB2 A:SER22 4.6 34.9 1.0
HA A:GLU19 4.7 41.0 1.0
OE2 A:GLU132 4.8 76.0 1.0
HG12 A:VAL99 4.8 51.2 1.0
HG21 A:VAL99 4.8 50.0 1.0
HB3 A:SER22 4.8 34.9 1.0
OE1 A:GLU132 4.9 81.9 1.0
HG2 A:GLU52 4.9 57.0 1.0
O A:GLU52 4.9 32.0 1.0
OE1 A:GLU96 4.9 37.2 1.0
HG13 A:VAL99 4.9 51.2 1.0
HG3 A:GLU19 5.0 59.8 1.0
CB A:GLU19 5.0 30.0 1.0

Iron binding site 2 out of 8 in 6txi

Go back to Iron Binding Sites List in 6txi
Iron binding site 2 out of 8 in the Crystal Structure of Thermotoga Maritima E65A Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Thermotoga Maritima E65A Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe208

b:37.6
occ:0.59
OE1 B:GLU52 1.9 39.4 1.0
OE1 B:GLU19 2.1 40.5 1.0
O B:HOH352 2.3 42.9 1.0
ND1 B:HIS55 2.3 44.0 1.0
O B:HOH323 2.4 44.4 1.0
O B:HOH333 2.5 48.3 1.0
CD B:GLU52 2.9 43.3 1.0
CD B:GLU19 3.1 40.6 1.0
CE1 B:HIS55 3.1 47.1 1.0
HE1 B:HIS55 3.2 56.6 1.0
OE2 B:GLU52 3.3 37.1 1.0
OE2 B:GLU19 3.4 44.1 1.0
CG B:HIS55 3.4 32.9 1.0
HG11 B:VAL99 3.6 40.2 1.0
HB2 B:HIS55 3.6 36.8 1.0
HA B:GLU52 3.6 32.6 1.0
HB3 B:HIS55 3.7 36.8 1.0
CB B:HIS55 3.8 30.6 1.0
OE1 B:GLN129 4.2 34.0 1.0
HB3 B:GLU52 4.2 36.1 1.0
CG B:GLU52 4.2 39.8 1.0
NE2 B:HIS55 4.3 35.8 1.0
HB3 B:GLU19 4.4 33.7 1.0
OE1 B:GLU96 4.4 35.4 1.0
CG B:GLU19 4.5 30.7 1.0
CA B:GLU52 4.5 27.1 1.0
HA B:GLU19 4.5 34.7 1.0
CD2 B:HIS55 4.5 41.3 1.0
HB2 B:SER22 4.5 37.8 1.0
CG1 B:VAL99 4.5 33.4 1.0
CB B:GLU52 4.5 30.0 1.0
OE2 B:GLU96 4.6 50.9 1.0
HG3 B:GLU52 4.6 47.8 1.0
HB3 B:SER22 4.6 37.8 1.0
HG21 B:VAL99 4.7 45.9 1.0
HG12 B:VAL99 4.7 40.2 1.0
HG3 B:GLU19 4.8 36.9 1.0
CB B:GLU19 4.9 28.0 1.0
HG3 B:GLU132 4.9 113.2 1.0
OG B:SER22 4.9 35.4 1.0
CB B:SER22 4.9 31.5 1.0
HG2 B:GLU52 4.9 47.8 1.0
HG13 B:VAL99 4.9 40.2 1.0
CD B:GLU96 5.0 52.9 1.0

Iron binding site 3 out of 8 in 6txi

Go back to Iron Binding Sites List in 6txi
Iron binding site 3 out of 8 in the Crystal Structure of Thermotoga Maritima E65A Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Thermotoga Maritima E65A Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:53.9
occ:0.56
O C:HOH358 2.0 149.1 1.0
OE1 C:GLU52 2.2 49.1 1.0
ND1 C:HIS55 2.2 57.2 1.0
OE1 C:GLU19 2.5 52.4 1.0
O C:HOH339 2.8 81.3 1.0
CE1 C:HIS55 3.1 52.8 1.0
HE1 C:HIS55 3.2 63.4 1.0
CD C:GLU52 3.2 51.1 1.0
CG C:HIS55 3.3 50.4 1.0
CD C:GLU19 3.3 67.9 1.0
OE2 C:GLU19 3.4 55.8 1.0
HB3 C:HIS55 3.5 57.8 1.0
OE2 C:GLU52 3.5 53.6 1.0
HB2 C:HIS55 3.5 57.8 1.0
CB C:HIS55 3.7 48.1 1.0
HG11 C:VAL99 3.7 56.1 1.0
OE1 C:GLN129 3.8 45.6 1.0
HA C:GLU52 3.8 44.7 1.0
NE2 C:HIS55 4.2 53.9 1.0
CD2 C:HIS55 4.4 44.9 1.0
OE1 C:GLU96 4.5 42.9 1.0
CG C:GLU52 4.5 43.7 1.0
CG1 C:VAL99 4.6 46.7 1.0
HG12 C:VAL99 4.7 56.1 1.0
CG C:GLU19 4.7 54.5 1.0
HB3 C:GLU19 4.7 44.2 1.0
CA C:GLU52 4.7 37.2 1.0
CD C:GLN129 4.8 48.7 1.0
OE2 C:GLU96 4.8 49.8 1.0
HD2 C:PHE125 4.8 68.7 1.0
HG3 C:GLU52 4.9 52.5 1.0
HG3 C:GLU132 4.9 75.6 1.0
HE22 C:GLN129 4.9 54.5 1.0
HB3 C:GLU52 4.9 44.9 1.0
HA C:GLU19 4.9 42.1 1.0
HE2 C:HIS55 5.0 64.8 1.0
HG21 C:VAL99 5.0 62.6 1.0
CB C:GLU52 5.0 37.4 1.0

Iron binding site 4 out of 8 in 6txi

Go back to Iron Binding Sites List in 6txi
Iron binding site 4 out of 8 in the Crystal Structure of Thermotoga Maritima E65A Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Thermotoga Maritima E65A Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe204

b:280.6
occ:0.97
OE1 D:GLU19 2.0 123.8 1.0
O D:HOH308 2.1 289.7 1.0
ND1 D:HIS55 2.2 74.9 1.0
OE1 D:GLU52 2.3 56.6 1.0
O D:HOH357 2.4 61.5 1.0
CD D:GLU19 2.8 60.5 1.0
O D:HOH334 2.9 83.9 1.0
OE2 D:GLU19 3.0 75.7 1.0
CE1 D:HIS55 3.2 52.0 1.0
CG D:HIS55 3.3 56.3 1.0
HE1 D:HIS55 3.3 62.5 1.0
HB3 D:HIS55 3.4 45.7 1.0
CD D:GLU52 3.4 53.4 1.0
HB2 D:HIS55 3.4 45.7 1.0
CB D:HIS55 3.6 38.0 1.0
HG11 D:VAL99 3.6 43.5 1.0
OE2 D:GLU52 3.8 52.1 1.0
HA D:GLU52 3.8 40.6 1.0
OE1 D:GLN129 4.0 40.1 1.0
CG D:GLU19 4.2 46.1 1.0
NE2 D:HIS55 4.3 41.1 1.0
HB3 D:GLU19 4.3 41.8 1.0
CD2 D:HIS55 4.4 50.4 1.0
CG1 D:VAL99 4.5 36.2 1.0
HB3 D:GLU52 4.5 47.7 1.0
HG3 D:GLU19 4.5 55.3 1.0
HA D:GLU19 4.6 43.4 1.0
HG12 D:VAL99 4.6 43.5 1.0
CG D:GLU52 4.7 53.5 1.0
CA D:GLU52 4.7 33.8 1.0
OE1 D:GLU96 4.7 43.4 1.0
HD1 D:PHE125 4.8 66.2 1.0
CB D:GLU19 4.8 34.8 1.0
HG13 D:VAL99 4.9 43.5 1.0
CB D:GLU52 4.9 39.7 1.0
HG2 D:GLU19 4.9 55.3 1.0
HE1 D:PHE125 4.9 60.6 1.0
HB2 D:SER22 4.9 46.9 1.0
HG21 D:VAL99 4.9 54.5 1.0
OE2 D:GLU96 5.0 52.1 1.0

Iron binding site 5 out of 8 in 6txi

Go back to Iron Binding Sites List in 6txi
Iron binding site 5 out of 8 in the Crystal Structure of Thermotoga Maritima E65A Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of Thermotoga Maritima E65A Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:30.3
occ:0.38
OE1 E:GLU52 1.8 40.9 1.0
O E:HOH373 1.9 49.9 1.0
OE1 E:GLU19 2.1 44.5 1.0
O E:HOH317 2.1 48.3 1.0
ND1 E:HIS55 2.3 56.1 1.0
O E:HOH356 2.7 51.5 1.0
CD E:GLU52 2.9 58.8 1.0
CD E:GLU19 3.1 77.9 1.0
CE1 E:HIS55 3.2 46.3 1.0
HE1 E:HIS55 3.2 55.6 1.0
OE2 E:GLU19 3.4 63.3 1.0
OE2 E:GLU52 3.4 39.4 1.0
CG E:HIS55 3.4 38.6 1.0
HB2 E:HIS55 3.6 46.2 1.0
HG11 E:VAL99 3.6 46.0 1.0
HA E:GLU52 3.7 42.1 1.0
HB3 E:HIS55 3.7 46.2 1.0
CB E:HIS55 3.8 38.4 1.0
OE1 E:GLN129 4.1 37.2 1.0
CG E:GLU52 4.2 50.6 1.0
HB3 E:GLU52 4.3 49.2 1.0
NE2 E:HIS55 4.4 38.8 1.0
HB3 E:GLU19 4.4 47.8 1.0
OE1 E:GLU96 4.4 39.9 1.0
CG E:GLU19 4.5 79.3 1.0
CD2 E:HIS55 4.5 37.5 1.0
CA E:GLU52 4.5 35.1 1.0
CB E:GLU52 4.5 41.0 1.0
HA E:GLU19 4.5 32.9 1.0
HG3 E:GLU52 4.6 60.8 1.0
CG1 E:VAL99 4.6 38.2 1.0
HB2 E:SER22 4.6 39.4 1.0
OE2 E:GLU96 4.6 47.1 1.0
HB3 E:SER22 4.7 39.4 1.0
HG21 E:VAL99 4.7 49.5 1.0
HG12 E:VAL99 4.7 46.0 1.0
HG3 E:GLU19 4.8 95.2 1.0
CB E:GLU19 4.9 39.8 1.0
HG2 E:GLU52 4.9 60.8 1.0
HE22 E:GLN129 5.0 42.9 1.0
CB E:SER22 5.0 32.8 1.0
OG E:SER22 5.0 39.7 1.0
CD E:GLU96 5.0 44.1 1.0

Iron binding site 6 out of 8 in 6txi

Go back to Iron Binding Sites List in 6txi
Iron binding site 6 out of 8 in the Crystal Structure of Thermotoga Maritima E65A Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of Thermotoga Maritima E65A Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe205

b:35.7
occ:0.41
OE1 F:GLU52 1.9 43.8 1.0
O F:HOH335 2.2 46.8 1.0
OE1 F:GLU19 2.2 41.8 1.0
O F:HOH308 2.3 66.4 1.0
ND1 F:HIS55 2.4 55.1 1.0
O F:HOH340 2.7 51.6 1.0
CD F:GLU52 2.9 44.2 1.0
CD F:GLU19 3.0 50.2 1.0
CE1 F:HIS55 3.1 68.0 1.0
HE1 F:HIS55 3.2 81.6 1.0
OE2 F:GLU19 3.2 44.4 1.0
OE2 F:GLU52 3.4 42.2 1.0
CG F:HIS55 3.5 50.2 1.0
HG11 F:VAL99 3.6 48.8 1.0
HB2 F:HIS55 3.6 45.7 1.0
HA F:GLU52 3.6 41.8 1.0
HB3 F:HIS55 3.8 45.7 1.0
CB F:HIS55 3.9 38.0 1.0
OE1 F:GLN129 4.1 36.4 1.0
CG F:GLU52 4.2 33.5 1.0
HB3 F:GLU52 4.3 38.9 1.0
NE2 F:HIS55 4.3 52.7 1.0
CG F:GLU19 4.4 45.0 1.0
OE2 F:GLU96 4.4 42.1 1.0
HB3 F:GLU19 4.5 44.1 1.0
CA F:GLU52 4.5 34.8 1.0
CD2 F:HIS55 4.5 43.9 1.0
OE1 F:GLU96 4.5 47.8 1.0
HA F:GLU19 4.5 44.9 1.0
CG1 F:VAL99 4.5 40.6 1.0
HB2 F:SER22 4.5 44.8 1.0
CB F:GLU52 4.6 32.4 1.0
OE2 F:GLU132 4.6 63.8 1.0
HG3 F:GLU52 4.6 40.3 1.0
HB3 F:SER22 4.6 44.8 1.0
HG21 F:VAL99 4.7 45.0 1.0
HG12 F:VAL99 4.7 48.8 1.0
HG3 F:GLU19 4.8 54.1 1.0
CB F:GLU19 4.9 36.7 1.0
CB F:SER22 4.9 37.3 1.0
HG2 F:GLU52 4.9 40.3 1.0
OG F:SER22 4.9 41.9 1.0
CD F:GLU96 4.9 57.3 1.0
HG13 F:VAL99 5.0 48.8 1.0

Iron binding site 7 out of 8 in 6txi

Go back to Iron Binding Sites List in 6txi
Iron binding site 7 out of 8 in the Crystal Structure of Thermotoga Maritima E65A Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Crystal Structure of Thermotoga Maritima E65A Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe201

b:55.2
occ:0.49
OE1 G:GLU52 1.9 95.3 1.0
OE1 G:GLU19 2.2 60.6 1.0
O G:HOH303 2.3 175.6 1.0
ND1 G:HIS55 2.4 60.4 1.0
O G:HOH309 2.4 117.7 1.0
CD G:GLU52 2.9 74.8 1.0
CD G:GLU19 3.0 100.0 1.0
OE2 G:GLU19 3.1 67.8 1.0
CE1 G:HIS55 3.2 52.8 1.0
HE1 G:HIS55 3.2 63.4 1.0
OE2 G:GLU52 3.3 84.0 1.0
CG G:HIS55 3.5 49.1 1.0
HB2 G:HIS55 3.5 51.7 1.0
HA G:GLU52 3.6 61.2 1.0
HG11 G:VAL99 3.7 50.2 1.0
HB3 G:HIS55 3.8 51.7 1.0
CB G:HIS55 3.8 43.1 1.0
OE1 G:GLN129 4.1 42.7 1.0
CG G:GLU52 4.3 81.8 1.0
HB3 G:GLU52 4.3 87.9 1.0
O G:HOH305 4.3 160.0 1.0
NE2 G:HIS55 4.4 47.0 1.0
HG G:SER22 4.4 66.5 1.0
CG G:GLU19 4.4 101.5 1.0
HB3 G:GLU19 4.5 76.6 1.0
CA G:GLU52 4.5 51.0 1.0
CD2 G:HIS55 4.5 43.8 1.0
CG1 G:VAL99 4.6 41.8 1.0
CB G:GLU52 4.6 73.2 1.0
OE1 G:GLU132 4.6 85.4 1.0
HA G:GLU19 4.6 48.9 1.0
HG3 G:GLU52 4.7 98.3 1.0
HG12 G:VAL99 4.7 50.2 1.0
HB2 G:SER22 4.7 57.3 1.0
OE2 G:GLU96 4.7 52.5 1.0
OE1 G:GLU96 4.8 57.6 1.0
HG3 G:GLU19 4.8 121.9 1.0
HB3 G:SER22 4.9 57.3 1.0
HG2 G:GLU52 4.9 98.3 1.0
CB G:GLU19 4.9 63.8 1.0
HG21 G:VAL99 4.9 59.0 1.0
HG2 G:GLU19 5.0 121.9 1.0
HG13 G:VAL99 5.0 50.2 1.0

Iron binding site 8 out of 8 in 6txi

Go back to Iron Binding Sites List in 6txi
Iron binding site 8 out of 8 in the Crystal Structure of Thermotoga Maritima E65A Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Crystal Structure of Thermotoga Maritima E65A Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe204

b:41.1
occ:0.33
OE1 H:GLU52 1.8 60.1 1.0
OE1 H:GLU19 2.1 58.0 1.0
O H:HOH332 2.1 60.1 1.0
O H:HOH308 2.4 92.8 1.0
ND1 H:HIS55 2.5 56.2 1.0
O H:HOH353 2.8 65.3 1.0
CD H:GLU52 2.8 47.7 1.0
CD H:GLU19 3.0 65.2 1.0
OE2 H:GLU19 3.2 63.7 1.0
CE1 H:HIS55 3.2 58.7 1.0
OE2 H:GLU52 3.2 55.8 1.0
HE1 H:HIS55 3.3 70.5 1.0
CG H:HIS55 3.5 49.8 1.0
HG11 H:VAL99 3.6 56.4 1.0
HB2 H:HIS55 3.6 53.8 1.0
HA H:GLU52 3.7 58.6 1.0
HB3 H:HIS55 3.9 53.8 1.0
CB H:HIS55 3.9 44.7 1.0
OE1 H:GLN129 4.2 46.3 1.0
CG H:GLU52 4.2 51.2 1.0
HB3 H:GLU52 4.3 68.5 1.0
HB3 H:GLU19 4.4 56.1 1.0
CG H:GLU19 4.4 45.0 1.0
NE2 H:HIS55 4.4 50.7 1.0
HB2 H:SER22 4.4 62.4 1.0
HA H:GLU19 4.4 50.4 1.0
OE1 H:GLU96 4.5 55.2 1.0
CG1 H:VAL99 4.5 47.0 1.0
CA H:GLU52 4.5 48.8 1.0
HG3 H:GLU52 4.5 61.5 1.0
CB H:GLU52 4.5 57.0 1.0
CD2 H:HIS55 4.6 52.0 1.0
HB3 H:SER22 4.6 62.4 1.0
HG21 H:VAL99 4.6 56.9 1.0
OE2 H:GLU96 4.6 62.0 1.0
HG12 H:VAL99 4.7 56.4 1.0
HG3 H:GLU19 4.8 54.0 1.0
CB H:GLU19 4.8 46.7 1.0
HG2 H:GLU52 4.8 61.5 1.0
OE1 H:GLU132 4.9 81.8 1.0
CB H:SER22 4.9 51.9 1.0
OG H:SER22 4.9 65.7 1.0
HG2 H:GLU19 5.0 54.0 1.0
HG13 H:VAL99 5.0 56.4 1.0

Reference:

P.Wilk, P.Grudnik, M.Kumar, J.Heddle, S.Chakraborti. Crystal Structure of Thermotoga Maritima Ferritin in Apo Form To Be Published.
Page generated: Sat Aug 21 14:07:56 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy