Iron in PDB 6uez: Human Sterol 14A-Demethylase (CYP51) in Complex with the Substrate Lanosterol

Enzymatic activity of Human Sterol 14A-Demethylase (CYP51) in Complex with the Substrate Lanosterol

All present enzymatic activity of Human Sterol 14A-Demethylase (CYP51) in Complex with the Substrate Lanosterol:
1.14.14.154;

Protein crystallography data

The structure of Human Sterol 14A-Demethylase (CYP51) in Complex with the Substrate Lanosterol, PDB code: 6uez was solved by T.Y.Hargrove, Z.Wawrzak, G.I.Lepesheva, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.60 / 1.98
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 91.180, 165.070, 154.030, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 22.2

Iron Binding Sites:

The binding sites of Iron atom in the Human Sterol 14A-Demethylase (CYP51) in Complex with the Substrate Lanosterol (pdb code 6uez). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Human Sterol 14A-Demethylase (CYP51) in Complex with the Substrate Lanosterol, PDB code: 6uez:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 6uez

Go back to Iron Binding Sites List in 6uez
Iron binding site 1 out of 2 in the Human Sterol 14A-Demethylase (CYP51) in Complex with the Substrate Lanosterol


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Human Sterol 14A-Demethylase (CYP51) in Complex with the Substrate Lanosterol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:37.8
occ:1.00
FE A:HEM601 0.0 37.8 1.0
ND A:HEM601 1.9 37.4 1.0
NA A:HEM601 2.0 36.1 1.0
NC A:HEM601 2.1 37.2 1.0
NB A:HEM601 2.1 38.9 1.0
SG A:CYS449 2.5 41.1 1.0
C1D A:HEM601 2.9 35.0 1.0
C4D A:HEM601 2.9 39.2 1.0
C1A A:HEM601 3.0 39.9 1.0
C4C A:HEM601 3.0 39.1 1.0
C4A A:HEM601 3.0 36.7 1.0
C4B A:HEM601 3.0 37.4 1.0
C1B A:HEM601 3.1 38.2 1.0
C1C A:HEM601 3.1 39.5 1.0
CHA A:HEM601 3.4 41.0 1.0
CHD A:HEM601 3.4 38.4 1.0
CHB A:HEM601 3.5 39.1 1.0
CHC A:HEM601 3.5 41.4 1.0
CB A:CYS449 3.5 39.5 1.0
CA A:CYS449 4.0 41.3 1.0
C8 A:LAN602 4.1 39.2 1.0
C2D A:HEM601 4.1 36.0 1.0
C3D A:HEM601 4.2 42.1 1.0
C3A A:HEM601 4.2 36.8 1.0
C2A A:HEM601 4.2 34.2 1.0
C3C A:HEM601 4.2 40.8 1.0
C2C A:HEM601 4.3 36.6 1.0
C2B A:HEM601 4.3 36.9 1.0
C3B A:HEM601 4.3 34.2 1.0
N A:ILE450 4.9 40.8 1.0

Iron binding site 2 out of 2 in 6uez

Go back to Iron Binding Sites List in 6uez
Iron binding site 2 out of 2 in the Human Sterol 14A-Demethylase (CYP51) in Complex with the Substrate Lanosterol


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Human Sterol 14A-Demethylase (CYP51) in Complex with the Substrate Lanosterol within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe601

b:36.8
occ:1.00
FE B:HEM601 0.0 36.8 1.0
ND B:HEM601 1.9 37.6 1.0
NA B:HEM601 2.0 35.9 1.0
NC B:HEM601 2.1 38.5 1.0
NB B:HEM601 2.1 35.7 1.0
SG B:CYS449 2.3 41.2 1.0
C1D B:HEM601 2.9 37.2 1.0
C4D B:HEM601 2.9 38.6 1.0
C1A B:HEM601 3.0 40.3 1.0
C4C B:HEM601 3.0 39.7 1.0
C4A B:HEM601 3.0 36.2 1.0
C4B B:HEM601 3.0 37.0 1.0
C1B B:HEM601 3.0 36.8 1.0
C1C B:HEM601 3.1 36.5 1.0
CHA B:HEM601 3.4 38.2 1.0
CHD B:HEM601 3.4 38.5 1.0
CB B:CYS449 3.4 40.1 1.0
CHB B:HEM601 3.5 39.0 1.0
CHC B:HEM601 3.5 38.0 1.0
CA B:CYS449 4.0 37.3 1.0
C2D B:HEM601 4.1 37.8 1.0
C3D B:HEM601 4.1 37.4 1.0
C8 B:LAN602 4.2 36.1 1.0
C3A B:HEM601 4.2 37.7 1.0
C2A B:HEM601 4.2 32.9 1.0
C3C B:HEM601 4.2 41.3 1.0
C2C B:HEM601 4.3 38.0 1.0
C2B B:HEM601 4.3 35.5 1.0
C3B B:HEM601 4.3 34.8 1.0
N B:ILE450 4.9 39.0 1.0
N B:GLY451 5.0 35.4 1.0
C B:CYS449 5.0 38.4 1.0

Reference:

T.Y.Hargrove, Z.Wawrzak, F.P.Guengerich, G.I.Lepesheva. A Requirement For An Active Proton Delivery Network Supports A Compound I Mediated C-C Bond Cleavage in CYP51 Catalysis J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X
Page generated: Sun Dec 13 17:15:17 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy