Iron in PDB 6uzv: The Structure of A Red Shifted Photosystem I Complex

All present enzymatic activity of The Structure of A Red Shifted Photosystem I Complex:
1.97.1.12;

The structure of The Structure of A Red Shifted Photosystem I Complex also contains other interesting chemical elements:

Magnesium	(Mg)	291 atoms
Calcium	(Ca)	3 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 36;

Binding sites:

The binding sites of Iron atom in the The Structure of A Red Shifted Photosystem I Complex (pdb code 6uzv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 36 binding sites of Iron where determined in the The Structure of A Red Shifted Photosystem I Complex, PDB code: 6uzv:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 36 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe846 b:19.3 occ:1.00 FE1 A:SF4846 0.0 19.3 1.0 SG B:CYS569 2.2 18.2 1.0 S2 A:SF4846 2.3 19.3 1.0 S4 A:SF4846 2.3 19.3 1.0 S3 A:SF4846 2.3 19.3 1.0 FE3 A:SF4846 2.7 19.3 1.0 FE4 A:SF4846 2.7 19.3 1.0 FE2 A:SF4846 2.7 19.3 1.0 CB B:CYS569 3.3 18.2 1.0 CA B:CYS569 3.4 18.2 1.0 S1 A:SF4846 3.9 19.3 1.0 CD1 A:ILE720 4.2 16.7 1.0 N B:CYS569 4.2 18.2 1.0 CZ3 B:TRP668 4.4 13.1 1.0 CB B:CYS560 4.5 19.5 1.0 C B:CYS569 4.6 18.2 1.0 O B:CYS569 4.7 18.2 1.0 SG B:CYS560 4.7 19.5 1.0 C B:THR568 4.8 18.9 1.0 CG2 A:ILE720 4.8 16.7 1.0 SG A:CYS574 4.8 17.9 1.0 SG A:CYS583 4.9 15.7 1.0 NH2 A:ARG724 4.9 15.1 1.0 CE3 B:TRP668 5.0 13.1 1.0

Iron binding site 2 out of 36 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe846 b:19.3 occ:1.00 FE2 A:SF4846 0.0 19.3 1.0 SG A:CYS583 2.2 15.7 1.0 S1 A:SF4846 2.3 19.3 1.0 S3 A:SF4846 2.3 19.3 1.0 S4 A:SF4846 2.3 19.3 1.0 FE3 A:SF4846 2.7 19.3 1.0 FE4 A:SF4846 2.7 19.3 1.0 FE1 A:SF4846 2.7 19.3 1.0 CB A:CYS583 3.2 15.7 1.0 CA A:CYS583 3.6 15.7 1.0 S2 A:SF4846 3.9 19.3 1.0 CD1 B:ILE703 4.3 17.3 1.0 N A:CYS583 4.5 15.7 1.0 CB A:CYS574 4.5 17.9 1.0 CG2 B:ILE703 4.6 17.3 1.0 CE3 B:TRP668 4.6 13.1 1.0 O A:CYS583 4.6 15.7 1.0 C A:CYS583 4.7 15.7 1.0 SG A:CYS574 4.7 17.9 1.0 SG B:CYS560 4.7 19.5 1.0 SG B:CYS569 4.7 18.2 1.0 CZ3 B:TRP668 4.8 13.1 1.0

Iron binding site 3 out of 36 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe846 b:19.3 occ:1.00 FE3 A:SF4846 0.0 19.3 1.0 SG A:CYS574 2.2 17.9 1.0 S2 A:SF4846 2.3 19.3 1.0 S4 A:SF4846 2.3 19.3 1.0 S1 A:SF4846 2.3 19.3 1.0 FE2 A:SF4846 2.7 19.3 1.0 FE1 A:SF4846 2.7 19.3 1.0 FE4 A:SF4846 2.7 19.3 1.0 CB A:CYS574 2.9 17.9 1.0 S3 A:SF4846 3.9 19.3 1.0 CA A:CYS574 4.3 17.9 1.0 CD1 A:ILE720 4.6 16.7 1.0 CA A:CYS583 4.6 15.7 1.0 SG B:CYS569 4.6 18.2 1.0 SG B:CYS560 4.7 19.5 1.0 N B:PRO563 4.7 20.6 1.0 SG A:CYS583 4.7 15.7 1.0 N A:CYS574 4.7 17.9 1.0 C B:GLY562 4.8 19.4 1.0 CD B:PRO563 4.8 20.6 1.0 CB B:PRO563 4.8 20.6 1.0 CA A:GLY576 4.9 16.6 1.0 C A:GLY576 4.9 16.6 1.0 CA B:PRO563 4.9 20.6 1.0 O A:CYS583 4.9 15.7 1.0 O B:GLY562 5.0 19.4 1.0 O A:GLY576 5.0 16.6 1.0 N A:GLY576 5.0 16.6 1.0

Iron binding site 4 out of 36 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe846 b:19.3 occ:1.00 FE4 A:SF4846 0.0 19.3 1.0 SG B:CYS560 2.2 19.5 1.0 S1 A:SF4846 2.3 19.3 1.0 S2 A:SF4846 2.3 19.3 1.0 S3 A:SF4846 2.3 19.3 1.0 FE3 A:SF4846 2.7 19.3 1.0 FE2 A:SF4846 2.7 19.3 1.0 FE1 A:SF4846 2.7 19.3 1.0 CB B:CYS560 2.8 19.5 1.0 S4 A:SF4846 3.9 19.3 1.0 CA B:CYS560 4.3 19.5 1.0 N B:GLY562 4.4 19.4 1.0 O B:GLY562 4.6 19.4 1.0 CA B:CYS569 4.6 18.2 1.0 SG A:CYS574 4.6 17.9 1.0 C B:GLY562 4.7 19.4 1.0 SG A:CYS583 4.7 15.7 1.0 CA B:GLY562 4.7 19.4 1.0 SG B:CYS569 4.7 18.2 1.0 N A:PRO577 4.8 15.6 1.0 O B:THR568 4.8 18.9 1.0 CD1 B:ILE703 4.8 17.3 1.0 N B:ASP561 4.9 23.3 1.0 CB A:PRO577 4.9 15.6 1.0 CD A:PRO577 4.9 15.6 1.0 N B:CYS560 4.9 19.5 1.0 C B:CYS560 4.9 19.5 1.0 CA A:PRO577 4.9 15.6 1.0 O B:CYS569 5.0 18.2 1.0 C A:GLY576 5.0 16.6 1.0

Iron binding site 5 out of 36 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:22.6 occ:1.00 FE1 C:SF4101 0.0 22.6 1.0 SG C:CYS51 2.3 19.1 1.0 S4 C:SF4101 2.3 22.6 1.0 S3 C:SF4101 2.3 22.6 1.0 S2 C:SF4101 2.3 22.6 1.0 FE2 C:SF4101 2.7 22.6 1.0 FE4 C:SF4101 2.7 22.6 1.0 FE3 C:SF4101 2.7 22.6 1.0 N C:CYS51 3.5 19.1 1.0 N C:LYS52 3.5 17.3 1.0 CB C:CYS51 3.7 19.1 1.0 S1 C:SF4101 3.9 22.6 1.0 CA C:CYS51 3.9 19.1 1.0 C C:CYS51 4.1 19.1 1.0 N C:ARG53 4.1 21.9 1.0 CD C:PRO22 4.2 28.3 1.0 CA C:LYS52 4.4 17.3 1.0 C C:GLY50 4.4 18.6 1.0 N C:GLY50 4.5 18.6 1.0 SG C:CYS48 4.6 29.6 1.0 CG2 C:VAL49 4.6 24.6 1.0 SG C:CYS54 4.6 22.4 1.0 CG C:PRO22 4.6 28.3 1.0 SG C:CYS21 4.6 28.1 1.0 C C:LYS52 4.8 17.3 1.0 CA C:GLY50 4.8 18.6 1.0 N C:CYS54 4.8 22.4 1.0

Iron binding site 6 out of 36 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:22.6 occ:1.00 FE2 C:SF4101 0.0 22.6 1.0 SG C:CYS21 2.2 28.1 1.0 S3 C:SF4101 2.3 22.6 1.0 S1 C:SF4101 2.3 22.6 1.0 S4 C:SF4101 2.3 22.6 1.0 FE1 C:SF4101 2.7 22.6 1.0 FE4 C:SF4101 2.7 22.6 1.0 FE3 C:SF4101 2.7 22.6 1.0 CB C:CYS21 3.2 28.1 1.0 CA C:CYS21 3.8 28.1 1.0 S2 C:SF4101 3.9 22.6 1.0 CB C:VAL25 4.3 32.5 1.0 CD C:PRO22 4.3 28.3 1.0 C C:CYS21 4.5 28.1 1.0 SG C:CYS51 4.5 19.1 1.0 N C:PRO22 4.6 28.3 1.0 CG2 C:VAL25 4.6 32.5 1.0 SG C:CYS54 4.6 22.4 1.0 CB C:CYS54 4.7 22.4 1.0 N C:VAL25 4.8 32.5 1.0 CD1 C:LEU26 4.8 32.6 1.0 CG C:LEU26 4.9 32.6 1.0 SG C:CYS48 4.9 29.6 1.0 N C:LEU23 5.0 30.5 1.0 N C:CYS21 5.0 28.1 1.0

Iron binding site 7 out of 36 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:22.6 occ:1.00 FE3 C:SF4101 0.0 22.6 1.0 SG C:CYS54 2.3 22.4 1.0 S4 C:SF4101 2.3 22.6 1.0 S2 C:SF4101 2.3 22.6 1.0 S1 C:SF4101 2.3 22.6 1.0 FE4 C:SF4101 2.7 22.6 1.0 FE2 C:SF4101 2.7 22.6 1.0 FE1 C:SF4101 2.7 22.6 1.0 CB C:CYS54 3.2 22.4 1.0 CG2 C:VAL67 3.8 26.5 1.0 S3 C:SF4101 3.9 22.6 1.0 N C:CYS54 4.0 22.4 1.0 CA C:CYS54 4.3 22.4 1.0 SG C:CYS48 4.5 29.6 1.0 N C:LYS52 4.5 17.3 1.0 CA C:LYS52 4.5 17.3 1.0 N C:ARG53 4.7 21.9 1.0 SG C:CYS51 4.8 19.1 1.0 CG2 C:VAL5 4.8 31.1 1.0 SG C:CYS21 4.8 28.1 1.0 CD1 C:LEU26 4.9 32.6 1.0 CG1 C:VAL5 4.9 31.1 1.0 C C:LYS52 5.0 17.3 1.0

Iron binding site 8 out of 36 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:22.6 occ:1.00 FE4 C:SF4101 0.0 22.6 1.0 SG C:CYS48 2.2 29.6 1.0 S2 C:SF4101 2.3 22.6 1.0 S1 C:SF4101 2.3 22.6 1.0 S3 C:SF4101 2.3 22.6 1.0 FE2 C:SF4101 2.7 22.6 1.0 FE1 C:SF4101 2.7 22.6 1.0 FE3 C:SF4101 2.7 22.6 1.0 CB C:CYS48 3.3 29.6 1.0 CA C:CYS48 3.6 29.6 1.0 S4 C:SF4101 3.9 22.6 1.0 N C:VAL49 4.1 24.6 1.0 N C:GLY50 4.1 18.6 1.0 C C:CYS48 4.3 29.6 1.0 CG2 C:VAL5 4.3 31.1 1.0 CG2 C:VAL25 4.6 32.5 1.0 CA C:GLY50 4.7 18.6 1.0 CB C:VAL25 4.7 32.5 1.0 SG C:CYS21 4.7 28.1 1.0 N C:CYS51 4.8 19.1 1.0 SG C:CYS51 4.8 19.1 1.0 SG C:CYS54 4.9 22.4 1.0 N C:CYS48 4.9 29.6 1.0 CG1 C:VAL67 4.9 26.5 1.0 CG2 C:VAL67 4.9 26.5 1.0 CG1 C:VAL25 5.0 32.5 1.0

Iron binding site 9 out of 36 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:38.0 occ:1.00 FE1 C:SF4102 0.0 38.0 1.0 SG C:CYS58 2.3 29.6 1.0 S2 C:SF4102 2.3 38.0 1.0 S4 C:SF4102 2.3 38.0 1.0 S3 C:SF4102 2.3 38.0 1.0 FE3 C:SF4102 2.7 38.0 1.0 FE4 C:SF4102 2.7 38.0 1.0 FE2 C:SF4102 2.7 38.0 1.0 CB C:CYS58 3.4 29.6 1.0 CA C:CYS58 3.8 29.6 1.0 S1 C:SF4102 3.9 38.0 1.0 CB C:SER64 4.0 32.4 1.0 CG2 C:ILE65 4.2 26.9 1.0 CD C:PRO59 4.3 33.4 1.0 OG C:SER64 4.5 32.4 1.0 CB C:CYS17 4.6 31.6 1.0 SG C:CYS14 4.6 37.2 1.0 C C:CYS58 4.7 29.6 1.0 SG C:CYS17 4.7 31.6 1.0 N C:PRO59 4.7 33.4 1.0 OG1 C:THR60 4.8 37.1 1.0 CA C:SER64 4.8 32.4 1.0 CB C:ILE65 4.8 26.9 1.0 C C:SER64 4.8 32.4 1.0 N C:ILE65 4.9 26.9 1.0 SG C:CYS11 4.9 38.8 1.0 N C:CYS58 4.9 29.6 1.0 N C:SER64 4.9 32.4 1.0

Iron binding site 10 out of 36 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:38.0 occ:1.00 FE2 C:SF4102 0.0 38.0 1.0 SG C:CYS17 2.2 31.6 1.0 S4 C:SF4102 2.3 38.0 1.0 S1 C:SF4102 2.3 38.0 1.0 S3 C:SF4102 2.3 38.0 1.0 FE4 C:SF4102 2.7 38.0 1.0 FE1 C:SF4102 2.7 38.0 1.0 FE3 C:SF4102 2.7 38.0 1.0 CB C:CYS17 3.0 31.6 1.0 N C:CYS17 3.7 31.6 1.0 S2 C:SF4102 3.9 38.0 1.0 CA C:CYS17 4.0 31.6 1.0 CB C:ALA40 4.0 38.0 1.0 SG C:CYS11 4.5 38.8 1.0 N C:GLN16 4.7 35.2 1.0 SG C:CYS14 4.7 37.2 1.0 SG C:CYS58 4.8 29.6 1.0 N C:VAL18 4.9 34.0 1.0 C C:CYS17 4.9 31.6 1.0 C C:GLN16 4.9 35.2 1.0 CG2 C:ILE65 4.9 26.9 1.0 N C:THR15 4.9 37.5 1.0

H.Toporik, A.Khmelnitskiy, Z.Dobson, R.Riddle, D.Williams, S.Lin, R.Jankowiak, Y.Mazor. The Structure of A Red-Shifted Photosystem I Reveals A Red Site in the Core Antenna. Nat Commun V. 11 5279 2020.
ISSN: ESSN 2041-1723
PubMed: 33077842
DOI: 10.1038/S41467-020-18884-W