Iron in PDB 6v0a: Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely
Enzymatic activity of Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely
All present enzymatic activity of Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely:
1.7.2.2;
Protein crystallography data
The structure of Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely, PDB code: 6v0a
was solved by
L.Satyanarayana,
J.Campecino,
L.H.Hegg,
J.Hu,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.66 /
2.55
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
110.859,
144.616,
234.887,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.8 /
24.2
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Binding sites:
The binding sites of Iron atom in the Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely
(pdb code 6v0a). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 30 binding sites of Iron where determined in the
Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely, PDB code: 6v0a:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 30 in 6v0a
Go back to
Iron Binding Sites List in 6v0a
Iron binding site 1 out
of 30 in the Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:34.0
occ:1.00
|
FE
|
A:HEC501
|
0.0
|
34.0
|
1.0
|
NB
|
A:HEC501
|
2.0
|
28.0
|
1.0
|
NC
|
A:HEC501
|
2.0
|
25.5
|
1.0
|
ND
|
A:HEC501
|
2.1
|
21.6
|
1.0
|
NA
|
A:HEC501
|
2.1
|
23.1
|
1.0
|
O3
|
A:SO4506
|
2.4
|
23.3
|
0.7
|
NZ
|
A:LYS133
|
2.4
|
25.5
|
1.0
|
C1C
|
A:HEC501
|
3.0
|
28.2
|
1.0
|
C1B
|
A:HEC501
|
3.0
|
30.9
|
1.0
|
C4C
|
A:HEC501
|
3.0
|
25.3
|
1.0
|
C4B
|
A:HEC501
|
3.1
|
26.6
|
1.0
|
C1D
|
A:HEC501
|
3.1
|
21.4
|
1.0
|
C4A
|
A:HEC501
|
3.1
|
23.1
|
1.0
|
C4D
|
A:HEC501
|
3.1
|
20.5
|
1.0
|
C1A
|
A:HEC501
|
3.1
|
22.5
|
1.0
|
CE
|
A:LYS133
|
3.2
|
23.2
|
1.0
|
S
|
A:SO4506
|
3.4
|
29.1
|
0.7
|
CHC
|
A:HEC501
|
3.4
|
26.6
|
1.0
|
CHD
|
A:HEC501
|
3.4
|
26.4
|
1.0
|
CHB
|
A:HEC501
|
3.4
|
23.6
|
1.0
|
O1
|
A:SO4506
|
3.4
|
31.1
|
0.7
|
CHA
|
A:HEC501
|
3.5
|
22.9
|
1.0
|
O4
|
A:SO4506
|
3.9
|
30.7
|
0.7
|
NE2
|
A:HIS278
|
4.2
|
20.5
|
1.0
|
C2C
|
A:HEC501
|
4.2
|
26.7
|
1.0
|
C3C
|
A:HEC501
|
4.2
|
22.8
|
1.0
|
C2B
|
A:HEC501
|
4.2
|
29.0
|
1.0
|
C2D
|
A:HEC501
|
4.3
|
19.0
|
1.0
|
C3B
|
A:HEC501
|
4.3
|
29.3
|
1.0
|
C3D
|
A:HEC501
|
4.3
|
19.2
|
1.0
|
C3A
|
A:HEC501
|
4.3
|
23.1
|
1.0
|
C2A
|
A:HEC501
|
4.3
|
25.4
|
1.0
|
O
|
A:HOH630
|
4.4
|
24.8
|
1.0
|
O2
|
A:SO4506
|
4.6
|
20.2
|
0.7
|
CD
|
A:LYS133
|
4.7
|
30.0
|
1.0
|
NE2
|
A:GLN115
|
4.9
|
24.6
|
1.0
|
CD2
|
A:HIS278
|
4.9
|
21.1
|
1.0
|
O
|
A:HOH625
|
4.9
|
22.4
|
1.0
|
CMD
|
A:HEC503
|
5.0
|
19.7
|
1.0
|
OH
|
A:TYR221
|
5.0
|
24.0
|
1.0
|
|
Iron binding site 2 out
of 30 in 6v0a
Go back to
Iron Binding Sites List in 6v0a
Iron binding site 2 out
of 30 in the Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe502
b:33.0
occ:1.00
|
FE
|
A:HEC502
|
0.0
|
33.0
|
1.0
|
ND
|
A:HEC502
|
2.0
|
22.2
|
1.0
|
NA
|
A:HEC502
|
2.0
|
30.0
|
1.0
|
NB
|
A:HEC502
|
2.0
|
25.0
|
1.0
|
NC
|
A:HEC502
|
2.1
|
24.2
|
1.0
|
NE2
|
A:HIS175
|
2.3
|
23.8
|
1.0
|
NE2
|
A:HIS315
|
2.4
|
23.2
|
1.0
|
C4D
|
A:HEC502
|
3.0
|
28.1
|
1.0
|
C1D
|
A:HEC502
|
3.0
|
22.6
|
1.0
|
C1A
|
A:HEC502
|
3.0
|
29.2
|
1.0
|
C4C
|
A:HEC502
|
3.1
|
21.3
|
1.0
|
C4A
|
A:HEC502
|
3.1
|
24.4
|
1.0
|
C1B
|
A:HEC502
|
3.1
|
25.0
|
1.0
|
C1C
|
A:HEC502
|
3.1
|
25.0
|
1.0
|
CD2
|
A:HIS315
|
3.1
|
20.1
|
1.0
|
C4B
|
A:HEC502
|
3.1
|
22.9
|
1.0
|
CD2
|
A:HIS175
|
3.1
|
24.8
|
1.0
|
CE1
|
A:HIS175
|
3.4
|
28.0
|
1.0
|
CHA
|
A:HEC502
|
3.4
|
27.6
|
1.0
|
CHD
|
A:HEC502
|
3.4
|
22.3
|
1.0
|
CHB
|
A:HEC502
|
3.4
|
25.9
|
1.0
|
CHC
|
A:HEC502
|
3.4
|
23.4
|
1.0
|
CE1
|
A:HIS315
|
3.5
|
23.9
|
1.0
|
C3D
|
A:HEC502
|
4.2
|
28.6
|
1.0
|
C2D
|
A:HEC502
|
4.2
|
24.8
|
1.0
|
C3A
|
A:HEC502
|
4.3
|
25.1
|
1.0
|
C2A
|
A:HEC502
|
4.3
|
26.6
|
1.0
|
C3C
|
A:HEC502
|
4.3
|
27.4
|
1.0
|
C2C
|
A:HEC502
|
4.3
|
25.3
|
1.0
|
C2B
|
A:HEC502
|
4.3
|
26.8
|
1.0
|
CG
|
A:HIS175
|
4.3
|
28.2
|
1.0
|
C3B
|
A:HEC502
|
4.3
|
23.6
|
1.0
|
CG
|
A:HIS315
|
4.3
|
25.2
|
1.0
|
ND1
|
A:HIS175
|
4.4
|
29.0
|
1.0
|
ND1
|
A:HIS315
|
4.5
|
25.1
|
1.0
|
CE
|
A:MET302
|
4.8
|
22.6
|
1.0
|
|
Iron binding site 3 out
of 30 in 6v0a
Go back to
Iron Binding Sites List in 6v0a
Iron binding site 3 out
of 30 in the Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe503
b:28.2
occ:1.00
|
FE
|
A:HEC503
|
0.0
|
28.2
|
1.0
|
NB
|
A:HEC503
|
2.0
|
17.3
|
1.0
|
ND
|
A:HEC503
|
2.0
|
17.3
|
1.0
|
NA
|
A:HEC503
|
2.0
|
21.3
|
1.0
|
NC
|
A:HEC503
|
2.0
|
22.1
|
1.0
|
NE2
|
A:HIS108
|
2.3
|
19.7
|
1.0
|
NE2
|
A:HIS218
|
2.3
|
16.4
|
1.0
|
C1B
|
A:HEC503
|
3.0
|
18.8
|
1.0
|
C1D
|
A:HEC503
|
3.0
|
22.1
|
1.0
|
C4A
|
A:HEC503
|
3.0
|
20.9
|
1.0
|
C4D
|
A:HEC503
|
3.0
|
21.2
|
1.0
|
C4B
|
A:HEC503
|
3.1
|
20.3
|
1.0
|
C4C
|
A:HEC503
|
3.1
|
20.2
|
1.0
|
C1C
|
A:HEC503
|
3.1
|
19.9
|
1.0
|
C1A
|
A:HEC503
|
3.1
|
19.6
|
1.0
|
CD2
|
A:HIS108
|
3.1
|
19.4
|
1.0
|
CD2
|
A:HIS218
|
3.2
|
20.9
|
1.0
|
CHB
|
A:HEC503
|
3.3
|
20.9
|
1.0
|
CE1
|
A:HIS108
|
3.3
|
22.9
|
1.0
|
CE1
|
A:HIS218
|
3.4
|
20.8
|
1.0
|
CHD
|
A:HEC503
|
3.4
|
22.2
|
1.0
|
CHA
|
A:HEC503
|
3.4
|
18.9
|
1.0
|
CHC
|
A:HEC503
|
3.4
|
20.0
|
1.0
|
C2B
|
A:HEC503
|
4.2
|
20.9
|
1.0
|
C2D
|
A:HEC503
|
4.2
|
18.4
|
1.0
|
C3D
|
A:HEC503
|
4.2
|
19.6
|
1.0
|
C3B
|
A:HEC503
|
4.3
|
20.1
|
1.0
|
C3A
|
A:HEC503
|
4.3
|
21.9
|
1.0
|
C2C
|
A:HEC503
|
4.3
|
21.5
|
1.0
|
C3C
|
A:HEC503
|
4.3
|
24.3
|
1.0
|
C2A
|
A:HEC503
|
4.3
|
22.5
|
1.0
|
CG
|
A:HIS108
|
4.3
|
20.1
|
1.0
|
CG
|
A:HIS218
|
4.4
|
20.7
|
1.0
|
ND1
|
A:HIS108
|
4.4
|
31.0
|
1.0
|
ND1
|
A:HIS218
|
4.4
|
24.4
|
1.0
|
|
Iron binding site 4 out
of 30 in 6v0a
Go back to
Iron Binding Sites List in 6v0a
Iron binding site 4 out
of 30 in the Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe504
b:23.1
occ:1.00
|
FE
|
A:HEC504
|
0.0
|
23.1
|
1.0
|
NB
|
A:HEC504
|
2.0
|
17.7
|
1.0
|
NC
|
A:HEC504
|
2.0
|
19.9
|
1.0
|
ND
|
A:HEC504
|
2.0
|
15.0
|
1.0
|
NA
|
A:HEC504
|
2.1
|
16.1
|
1.0
|
NE2
|
A:HIS412
|
2.2
|
20.9
|
1.0
|
NE2
|
A:HIS301
|
2.3
|
15.9
|
1.0
|
C1B
|
A:HEC504
|
3.0
|
18.8
|
1.0
|
C4B
|
A:HEC504
|
3.0
|
18.1
|
1.0
|
C1D
|
A:HEC504
|
3.0
|
18.0
|
1.0
|
C4C
|
A:HEC504
|
3.0
|
18.2
|
1.0
|
C1C
|
A:HEC504
|
3.0
|
20.0
|
1.0
|
CD2
|
A:HIS301
|
3.0
|
16.3
|
1.0
|
C4A
|
A:HEC504
|
3.0
|
18.6
|
1.0
|
C4D
|
A:HEC504
|
3.0
|
16.8
|
1.0
|
C1A
|
A:HEC504
|
3.1
|
16.8
|
1.0
|
CE1
|
A:HIS412
|
3.2
|
20.9
|
1.0
|
CD2
|
A:HIS412
|
3.2
|
18.8
|
1.0
|
CHD
|
A:HEC504
|
3.4
|
18.6
|
1.0
|
CHC
|
A:HEC504
|
3.4
|
18.4
|
1.0
|
CHB
|
A:HEC504
|
3.4
|
19.6
|
1.0
|
CE1
|
A:HIS301
|
3.4
|
20.5
|
1.0
|
CHA
|
A:HEC504
|
3.4
|
18.6
|
1.0
|
C2B
|
A:HEC504
|
4.2
|
18.9
|
1.0
|
C3B
|
A:HEC504
|
4.2
|
23.2
|
1.0
|
C3C
|
A:HEC504
|
4.2
|
18.1
|
1.0
|
C2C
|
A:HEC504
|
4.2
|
16.0
|
1.0
|
C2D
|
A:HEC504
|
4.2
|
18.6
|
1.0
|
C3A
|
A:HEC504
|
4.2
|
19.7
|
1.0
|
C3D
|
A:HEC504
|
4.3
|
17.1
|
1.0
|
CG
|
A:HIS301
|
4.3
|
24.5
|
1.0
|
C2A
|
A:HEC504
|
4.3
|
16.5
|
1.0
|
ND1
|
A:HIS412
|
4.3
|
22.9
|
1.0
|
CG
|
A:HIS412
|
4.4
|
22.8
|
1.0
|
ND1
|
A:HIS301
|
4.4
|
23.8
|
1.0
|
|
Iron binding site 5 out
of 30 in 6v0a
Go back to
Iron Binding Sites List in 6v0a
Iron binding site 5 out
of 30 in the Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe505
b:33.1
occ:1.00
|
FE
|
A:HEC505
|
0.0
|
33.1
|
1.0
|
NA
|
A:HEC505
|
2.0
|
25.2
|
1.0
|
ND
|
A:HEC505
|
2.0
|
32.4
|
1.0
|
NC
|
A:HEC505
|
2.1
|
28.6
|
1.0
|
NB
|
A:HEC505
|
2.1
|
25.6
|
1.0
|
NE2
|
A:HIS332
|
2.3
|
32.2
|
1.0
|
NE2
|
A:HIS290
|
2.3
|
21.3
|
1.0
|
C1A
|
A:HEC505
|
3.0
|
24.1
|
1.0
|
C4D
|
A:HEC505
|
3.0
|
30.4
|
1.0
|
CD2
|
A:HIS290
|
3.0
|
21.5
|
1.0
|
C4A
|
A:HEC505
|
3.0
|
22.8
|
1.0
|
C1D
|
A:HEC505
|
3.1
|
29.5
|
1.0
|
C4C
|
A:HEC505
|
3.1
|
27.1
|
1.0
|
C1C
|
A:HEC505
|
3.1
|
24.7
|
1.0
|
C1B
|
A:HEC505
|
3.1
|
25.1
|
1.0
|
C4B
|
A:HEC505
|
3.1
|
23.1
|
1.0
|
CD2
|
A:HIS332
|
3.1
|
31.6
|
1.0
|
CE1
|
A:HIS332
|
3.2
|
32.8
|
1.0
|
CHA
|
A:HEC505
|
3.3
|
26.2
|
1.0
|
CHD
|
A:HEC505
|
3.4
|
28.0
|
1.0
|
CHB
|
A:HEC505
|
3.4
|
27.0
|
1.0
|
CHC
|
A:HEC505
|
3.4
|
20.6
|
1.0
|
CE1
|
A:HIS290
|
3.5
|
25.0
|
1.0
|
C2A
|
A:HEC505
|
4.2
|
27.4
|
1.0
|
C3A
|
A:HEC505
|
4.2
|
26.1
|
1.0
|
C3D
|
A:HEC505
|
4.2
|
31.6
|
1.0
|
C2D
|
A:HEC505
|
4.3
|
26.4
|
1.0
|
CG
|
A:HIS332
|
4.3
|
34.4
|
1.0
|
CG
|
A:HIS290
|
4.3
|
27.5
|
1.0
|
ND1
|
A:HIS332
|
4.3
|
38.9
|
1.0
|
C2C
|
A:HEC505
|
4.3
|
28.1
|
1.0
|
C3C
|
A:HEC505
|
4.3
|
29.8
|
1.0
|
C2B
|
A:HEC505
|
4.3
|
17.3
|
1.0
|
C3B
|
A:HEC505
|
4.4
|
19.6
|
1.0
|
ND1
|
A:HIS290
|
4.5
|
30.9
|
1.0
|
CBC
|
A:HEC504
|
4.8
|
21.2
|
1.0
|
|
Iron binding site 6 out
of 30 in 6v0a
Go back to
Iron Binding Sites List in 6v0a
Iron binding site 6 out
of 30 in the Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe501
b:29.9
occ:1.00
|
FE
|
B:HEC501
|
0.0
|
29.9
|
1.0
|
NC
|
B:HEC501
|
2.0
|
27.6
|
1.0
|
NB
|
B:HEC501
|
2.1
|
25.4
|
1.0
|
ND
|
B:HEC501
|
2.1
|
27.1
|
1.0
|
NA
|
B:HEC501
|
2.2
|
24.9
|
1.0
|
O3
|
B:SO4506
|
2.4
|
23.4
|
0.7
|
NZ
|
B:LYS133
|
2.5
|
24.9
|
1.0
|
C4C
|
B:HEC501
|
3.0
|
23.3
|
1.0
|
C1C
|
B:HEC501
|
3.0
|
26.2
|
1.0
|
C1D
|
B:HEC501
|
3.0
|
24.9
|
1.0
|
C4B
|
B:HEC501
|
3.1
|
27.2
|
1.0
|
C1B
|
B:HEC501
|
3.1
|
25.2
|
1.0
|
C4D
|
B:HEC501
|
3.1
|
24.0
|
1.0
|
C4A
|
B:HEC501
|
3.2
|
25.9
|
1.0
|
C1A
|
B:HEC501
|
3.2
|
26.9
|
1.0
|
S
|
B:SO4506
|
3.2
|
33.7
|
0.7
|
CE
|
B:LYS133
|
3.3
|
25.2
|
1.0
|
O1
|
B:SO4506
|
3.4
|
30.8
|
0.7
|
CHD
|
B:HEC501
|
3.4
|
21.4
|
1.0
|
CHC
|
B:HEC501
|
3.4
|
28.2
|
1.0
|
CHB
|
B:HEC501
|
3.5
|
24.8
|
1.0
|
O2
|
B:SO4506
|
3.5
|
27.3
|
0.7
|
CHA
|
B:HEC501
|
3.5
|
28.5
|
1.0
|
NE2
|
B:HIS278
|
4.0
|
23.3
|
1.0
|
C3C
|
B:HEC501
|
4.2
|
24.7
|
1.0
|
C2C
|
B:HEC501
|
4.2
|
24.0
|
1.0
|
C2D
|
B:HEC501
|
4.3
|
23.7
|
1.0
|
C3B
|
B:HEC501
|
4.3
|
28.6
|
1.0
|
C2B
|
B:HEC501
|
4.3
|
27.7
|
1.0
|
C3D
|
B:HEC501
|
4.3
|
21.6
|
1.0
|
O
|
B:HOH703
|
4.3
|
23.2
|
1.0
|
C3A
|
B:HEC501
|
4.4
|
27.1
|
1.0
|
C2A
|
B:HEC501
|
4.4
|
26.6
|
1.0
|
O4
|
B:SO4506
|
4.5
|
21.8
|
0.7
|
CD2
|
B:HIS278
|
4.8
|
24.0
|
1.0
|
CD
|
B:LYS133
|
4.8
|
23.1
|
1.0
|
O
|
B:HOH660
|
4.9
|
24.7
|
1.0
|
NE2
|
B:GLN115
|
4.9
|
26.9
|
1.0
|
CMD
|
B:HEC503
|
4.9
|
26.8
|
1.0
|
OH
|
B:TYR221
|
5.0
|
28.7
|
1.0
|
|
Iron binding site 7 out
of 30 in 6v0a
Go back to
Iron Binding Sites List in 6v0a
Iron binding site 7 out
of 30 in the Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe502
b:34.3
occ:1.00
|
FE
|
B:HEC502
|
0.0
|
34.3
|
1.0
|
NC
|
B:HEC502
|
2.0
|
36.8
|
1.0
|
NB
|
B:HEC502
|
2.0
|
32.8
|
1.0
|
ND
|
B:HEC502
|
2.1
|
35.3
|
1.0
|
NA
|
B:HEC502
|
2.1
|
33.9
|
1.0
|
NE2
|
B:HIS175
|
2.2
|
27.1
|
1.0
|
NE2
|
B:HIS315
|
2.3
|
26.9
|
1.0
|
C1C
|
B:HEC502
|
3.0
|
34.3
|
1.0
|
C4B
|
B:HEC502
|
3.0
|
29.0
|
1.0
|
CD2
|
B:HIS175
|
3.0
|
32.8
|
1.0
|
C4C
|
B:HEC502
|
3.0
|
33.0
|
1.0
|
C1B
|
B:HEC502
|
3.1
|
32.8
|
1.0
|
C4A
|
B:HEC502
|
3.1
|
32.5
|
1.0
|
CD2
|
B:HIS315
|
3.1
|
31.1
|
1.0
|
C1A
|
B:HEC502
|
3.1
|
31.2
|
1.0
|
C4D
|
B:HEC502
|
3.1
|
36.3
|
1.0
|
C1D
|
B:HEC502
|
3.1
|
31.2
|
1.0
|
CE1
|
B:HIS175
|
3.3
|
36.1
|
1.0
|
CHC
|
B:HEC502
|
3.3
|
31.7
|
1.0
|
CHB
|
B:HEC502
|
3.4
|
32.7
|
1.0
|
CHD
|
B:HEC502
|
3.5
|
29.7
|
1.0
|
CE1
|
B:HIS315
|
3.5
|
30.0
|
1.0
|
CHA
|
B:HEC502
|
3.5
|
30.7
|
1.0
|
C2C
|
B:HEC502
|
4.2
|
31.4
|
1.0
|
C3B
|
B:HEC502
|
4.2
|
32.5
|
1.0
|
CG
|
B:HIS175
|
4.2
|
34.5
|
1.0
|
C3C
|
B:HEC502
|
4.2
|
31.5
|
1.0
|
C2B
|
B:HEC502
|
4.3
|
28.8
|
1.0
|
C3A
|
B:HEC502
|
4.3
|
32.8
|
1.0
|
C2A
|
B:HEC502
|
4.3
|
34.0
|
1.0
|
C3D
|
B:HEC502
|
4.3
|
33.1
|
1.0
|
C2D
|
B:HEC502
|
4.3
|
32.9
|
1.0
|
CG
|
B:HIS315
|
4.3
|
28.6
|
1.0
|
ND1
|
B:HIS175
|
4.4
|
39.6
|
1.0
|
ND1
|
B:HIS315
|
4.5
|
30.4
|
1.0
|
|
Iron binding site 8 out
of 30 in 6v0a
Go back to
Iron Binding Sites List in 6v0a
Iron binding site 8 out
of 30 in the Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe503
b:29.3
occ:1.00
|
FE
|
B:HEC503
|
0.0
|
29.3
|
1.0
|
NB
|
B:HEC503
|
2.0
|
29.7
|
1.0
|
NC
|
B:HEC503
|
2.0
|
23.6
|
1.0
|
NA
|
B:HEC503
|
2.0
|
21.9
|
1.0
|
ND
|
B:HEC503
|
2.1
|
28.0
|
1.0
|
NE2
|
B:HIS108
|
2.2
|
19.7
|
1.0
|
CE1
|
B:HIS218
|
2.3
|
20.5
|
1.0
|
C4B
|
B:HEC503
|
3.0
|
24.1
|
1.0
|
C1C
|
B:HEC503
|
3.0
|
24.4
|
1.0
|
C4C
|
B:HEC503
|
3.0
|
25.7
|
1.0
|
C1B
|
B:HEC503
|
3.0
|
29.0
|
1.0
|
C4A
|
B:HEC503
|
3.1
|
22.7
|
1.0
|
CD2
|
B:HIS108
|
3.1
|
20.5
|
1.0
|
C1D
|
B:HEC503
|
3.1
|
22.1
|
1.0
|
C4D
|
B:HEC503
|
3.1
|
24.9
|
1.0
|
C1A
|
B:HEC503
|
3.1
|
23.4
|
1.0
|
NE2
|
B:HIS218
|
3.1
|
22.4
|
1.0
|
CE1
|
B:HIS108
|
3.3
|
24.1
|
1.0
|
CHC
|
B:HEC503
|
3.4
|
24.7
|
1.0
|
CHD
|
B:HEC503
|
3.4
|
25.4
|
1.0
|
ND1
|
B:HIS218
|
3.4
|
25.4
|
1.0
|
CHB
|
B:HEC503
|
3.4
|
24.3
|
1.0
|
CHA
|
B:HEC503
|
3.4
|
19.4
|
1.0
|
C3B
|
B:HEC503
|
4.2
|
24.2
|
1.0
|
C2B
|
B:HEC503
|
4.2
|
23.0
|
1.0
|
C3C
|
B:HEC503
|
4.2
|
24.2
|
1.0
|
C2C
|
B:HEC503
|
4.3
|
21.0
|
1.0
|
CG
|
B:HIS108
|
4.3
|
22.2
|
1.0
|
C2D
|
B:HEC503
|
4.3
|
27.0
|
1.0
|
C3D
|
B:HEC503
|
4.3
|
26.3
|
1.0
|
C3A
|
B:HEC503
|
4.3
|
23.7
|
1.0
|
C2A
|
B:HEC503
|
4.3
|
26.7
|
1.0
|
ND1
|
B:HIS108
|
4.4
|
21.4
|
1.0
|
CD2
|
B:HIS218
|
4.4
|
19.2
|
1.0
|
CG
|
B:HIS218
|
4.5
|
22.6
|
1.0
|
|
Iron binding site 9 out
of 30 in 6v0a
Go back to
Iron Binding Sites List in 6v0a
Iron binding site 9 out
of 30 in the Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe504
b:26.8
occ:1.00
|
FE
|
B:HEC504
|
0.0
|
26.8
|
1.0
|
ND
|
B:HEC504
|
2.0
|
21.3
|
1.0
|
NA
|
B:HEC504
|
2.0
|
20.5
|
1.0
|
NB
|
B:HEC504
|
2.1
|
18.6
|
1.0
|
NC
|
B:HEC504
|
2.1
|
22.5
|
1.0
|
NE2
|
B:HIS412
|
2.2
|
13.8
|
1.0
|
NE2
|
B:HIS301
|
2.3
|
20.2
|
1.0
|
CE1
|
B:HIS412
|
3.0
|
15.9
|
1.0
|
C4D
|
B:HEC504
|
3.0
|
24.7
|
1.0
|
C1A
|
B:HEC504
|
3.0
|
22.1
|
1.0
|
C1D
|
B:HEC504
|
3.0
|
25.4
|
1.0
|
C4B
|
B:HEC504
|
3.1
|
20.4
|
1.0
|
C4A
|
B:HEC504
|
3.1
|
22.9
|
1.0
|
C1C
|
B:HEC504
|
3.1
|
19.4
|
1.0
|
C4C
|
B:HEC504
|
3.1
|
19.1
|
1.0
|
CD2
|
B:HIS301
|
3.1
|
22.8
|
1.0
|
C1B
|
B:HEC504
|
3.1
|
20.2
|
1.0
|
CD2
|
B:HIS412
|
3.3
|
17.3
|
1.0
|
CHA
|
B:HEC504
|
3.3
|
22.6
|
1.0
|
CE1
|
B:HIS301
|
3.4
|
27.2
|
1.0
|
CHC
|
B:HEC504
|
3.4
|
18.1
|
1.0
|
CHD
|
B:HEC504
|
3.4
|
27.1
|
1.0
|
CHB
|
B:HEC504
|
3.5
|
21.8
|
1.0
|
ND1
|
B:HIS412
|
4.2
|
15.2
|
1.0
|
C3D
|
B:HEC504
|
4.2
|
28.2
|
1.0
|
C2D
|
B:HEC504
|
4.2
|
26.9
|
1.0
|
C2A
|
B:HEC504
|
4.2
|
22.5
|
1.0
|
C3A
|
B:HEC504
|
4.3
|
22.4
|
1.0
|
C2C
|
B:HEC504
|
4.3
|
22.9
|
1.0
|
C3C
|
B:HEC504
|
4.3
|
25.3
|
1.0
|
C3B
|
B:HEC504
|
4.3
|
22.0
|
1.0
|
CG
|
B:HIS301
|
4.3
|
26.1
|
1.0
|
C2B
|
B:HEC504
|
4.3
|
19.5
|
1.0
|
CG
|
B:HIS412
|
4.3
|
19.4
|
1.0
|
ND1
|
B:HIS301
|
4.4
|
30.0
|
1.0
|
|
Iron binding site 10 out
of 30 in 6v0a
Go back to
Iron Binding Sites List in 6v0a
Iron binding site 10 out
of 30 in the Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Discovery of New Nfra Subclass Protein Family From Geobactoer Lovely within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe505
b:28.8
occ:1.00
|
FE
|
B:HEC505
|
0.0
|
28.8
|
1.0
|
NC
|
B:HEC505
|
2.0
|
29.2
|
1.0
|
ND
|
B:HEC505
|
2.0
|
24.6
|
1.0
|
NB
|
B:HEC505
|
2.0
|
31.8
|
1.0
|
NA
|
B:HEC505
|
2.1
|
27.5
|
1.0
|
NE2
|
B:HIS332
|
2.2
|
26.4
|
1.0
|
NE2
|
B:HIS290
|
2.3
|
19.5
|
1.0
|
C1C
|
B:HEC505
|
3.0
|
27.1
|
1.0
|
C1D
|
B:HEC505
|
3.0
|
23.6
|
1.0
|
C4B
|
B:HEC505
|
3.0
|
26.2
|
1.0
|
C4C
|
B:HEC505
|
3.0
|
27.8
|
1.0
|
CD2
|
B:HIS290
|
3.0
|
22.8
|
1.0
|
C4D
|
B:HEC505
|
3.0
|
24.3
|
1.0
|
C1A
|
B:HEC505
|
3.1
|
25.6
|
1.0
|
C1B
|
B:HEC505
|
3.1
|
25.7
|
1.0
|
C4A
|
B:HEC505
|
3.1
|
22.9
|
1.0
|
CE1
|
B:HIS332
|
3.2
|
29.0
|
1.0
|
CD2
|
B:HIS332
|
3.2
|
26.8
|
1.0
|
CHC
|
B:HEC505
|
3.3
|
25.9
|
1.0
|
CHD
|
B:HEC505
|
3.4
|
24.0
|
1.0
|
CHA
|
B:HEC505
|
3.4
|
22.5
|
1.0
|
CE1
|
B:HIS290
|
3.4
|
23.8
|
1.0
|
CHB
|
B:HEC505
|
3.5
|
25.4
|
1.0
|
C2C
|
B:HEC505
|
4.2
|
30.8
|
1.0
|
C2D
|
B:HEC505
|
4.2
|
24.3
|
1.0
|
C3C
|
B:HEC505
|
4.2
|
30.8
|
1.0
|
C3B
|
B:HEC505
|
4.3
|
23.8
|
1.0
|
C3D
|
B:HEC505
|
4.3
|
28.4
|
1.0
|
C2B
|
B:HEC505
|
4.3
|
23.8
|
1.0
|
C2A
|
B:HEC505
|
4.3
|
26.9
|
1.0
|
CG
|
B:HIS290
|
4.3
|
24.4
|
1.0
|
ND1
|
B:HIS332
|
4.3
|
33.7
|
1.0
|
C3A
|
B:HEC505
|
4.3
|
24.7
|
1.0
|
CG
|
B:HIS332
|
4.4
|
31.0
|
1.0
|
ND1
|
B:HIS290
|
4.4
|
27.4
|
1.0
|
|
Reference:
J.Campecino,
S.Lagishetty,
Z.Wawrzak,
V.Sosa Alfaro,
N.Lehnert,
G.Reguera,
J.Hu,
L.H.Hegg.
Cytochrome C Nitrite Reductase From the Bacterium Geobacter Lovleyi Represents A New Nrfa Subclass J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X
Page generated: Wed Aug 7 12:57:15 2024
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