Iron in PDB 6vw7: Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound
Enzymatic activity of Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound
All present enzymatic activity of Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound:
1.2.1.2;
Protein crystallography data
The structure of Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound, PDB code: 6vw7
was solved by
T.Young,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.53 /
2.00
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
132.656,
127.050,
99.840,
90.00,
123.50,
90.00
|
R / Rfree (%)
|
15.9 /
19.9
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound
(pdb code 6vw7). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound, PDB code: 6vw7:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 6vw7
Go back to
Iron Binding Sites List in 6vw7
Iron binding site 1 out
of 12 in the Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe301
b:26.9
occ:1.00
|
FE1
|
A:FES301
|
0.0
|
26.9
|
1.0
|
S2
|
A:FES301
|
2.2
|
24.6
|
1.0
|
S1
|
A:FES301
|
2.2
|
26.4
|
1.0
|
SG
|
A:CYS86
|
2.4
|
25.1
|
1.0
|
SG
|
A:CYS91
|
2.5
|
26.2
|
1.0
|
FE2
|
A:FES301
|
2.7
|
40.1
|
1.0
|
CB
|
A:CYS91
|
3.3
|
29.6
|
1.0
|
CB
|
A:CYS86
|
3.3
|
27.6
|
1.0
|
N
|
A:CYS91
|
3.8
|
29.1
|
1.0
|
CA
|
A:CYS127
|
4.0
|
24.8
|
1.0
|
CA
|
A:CYS91
|
4.2
|
28.8
|
1.0
|
N
|
A:LEU128
|
4.3
|
25.9
|
1.0
|
N
|
A:CYS127
|
4.5
|
27.2
|
1.0
|
CB
|
A:ALA136
|
4.5
|
25.1
|
1.0
|
O
|
A:HOH441
|
4.6
|
28.1
|
1.0
|
CB
|
A:CYS127
|
4.7
|
23.1
|
1.0
|
CA
|
A:CYS86
|
4.7
|
30.0
|
1.0
|
C
|
A:CYS127
|
4.7
|
24.9
|
1.0
|
CB
|
A:ALA88
|
4.7
|
25.8
|
1.0
|
O
|
A:ALA88
|
4.8
|
28.9
|
1.0
|
SG
|
A:CYS127
|
4.8
|
22.0
|
1.0
|
CA
|
A:CYS131
|
4.9
|
21.8
|
1.0
|
N
|
A:ALA88
|
4.9
|
24.4
|
1.0
|
C
|
A:ALA90
|
4.9
|
28.4
|
1.0
|
|
Iron binding site 2 out
of 12 in 6vw7
Go back to
Iron Binding Sites List in 6vw7
Iron binding site 2 out
of 12 in the Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe301
b:40.1
occ:1.00
|
FE2
|
A:FES301
|
0.0
|
40.1
|
1.0
|
S1
|
A:FES301
|
2.2
|
26.4
|
1.0
|
S2
|
A:FES301
|
2.2
|
24.6
|
1.0
|
SG
|
A:CYS131
|
2.5
|
22.9
|
1.0
|
SG
|
A:CYS127
|
2.6
|
22.0
|
1.0
|
FE1
|
A:FES301
|
2.7
|
26.9
|
1.0
|
CB
|
A:CYS131
|
3.4
|
21.6
|
1.0
|
CB
|
A:CYS127
|
3.4
|
23.1
|
1.0
|
CA
|
A:CYS127
|
3.5
|
24.8
|
1.0
|
CA
|
A:CYS131
|
3.6
|
21.8
|
1.0
|
N
|
A:CYS131
|
3.8
|
18.9
|
1.0
|
N
|
A:LEU128
|
3.9
|
25.9
|
1.0
|
N
|
A:GLY129
|
4.1
|
21.9
|
1.0
|
C
|
A:CYS127
|
4.2
|
24.9
|
1.0
|
N
|
A:GLN130
|
4.2
|
21.0
|
1.0
|
N
|
B:GLY189
|
4.3
|
25.6
|
1.0
|
CA
|
B:SER188
|
4.4
|
27.1
|
1.0
|
SG
|
A:CYS86
|
4.5
|
25.1
|
1.0
|
C
|
A:GLN130
|
4.5
|
21.8
|
1.0
|
CB
|
A:ALA90
|
4.6
|
23.3
|
1.0
|
CA
|
A:GLY129
|
4.6
|
17.8
|
1.0
|
N
|
A:CYS127
|
4.7
|
27.2
|
1.0
|
SG
|
A:CYS91
|
4.7
|
26.2
|
1.0
|
C
|
A:GLY129
|
4.8
|
19.7
|
1.0
|
CB
|
B:SER188
|
4.8
|
24.6
|
1.0
|
C
|
A:LEU128
|
4.9
|
22.4
|
1.0
|
CA
|
A:GLN130
|
4.9
|
20.6
|
1.0
|
CA
|
A:LEU128
|
5.0
|
25.2
|
1.0
|
C
|
B:SER188
|
5.0
|
26.4
|
1.0
|
|
Iron binding site 3 out
of 12 in 6vw7
Go back to
Iron Binding Sites List in 6vw7
Iron binding site 3 out
of 12 in the Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe601
b:28.5
occ:1.00
|
FE1
|
B:SF4601
|
0.0
|
28.5
|
1.0
|
S3
|
B:SF4601
|
2.3
|
31.8
|
1.0
|
S4
|
B:SF4601
|
2.3
|
34.4
|
1.0
|
S2
|
B:SF4601
|
2.3
|
30.1
|
1.0
|
SG
|
B:CYS489
|
2.4
|
32.4
|
1.0
|
FE4
|
B:SF4601
|
2.7
|
29.6
|
1.0
|
FE2
|
B:SF4601
|
2.7
|
33.3
|
1.0
|
FE3
|
B:SF4601
|
2.7
|
30.9
|
1.0
|
CB
|
B:CYS489
|
3.4
|
28.4
|
1.0
|
N
|
B:CYS489
|
3.6
|
34.6
|
1.0
|
CA
|
B:CYS489
|
3.9
|
30.4
|
1.0
|
S1
|
B:SF4601
|
3.9
|
34.1
|
1.0
|
CG2
|
B:VAL289
|
4.1
|
27.1
|
1.0
|
CB
|
B:MET491
|
4.1
|
30.5
|
1.0
|
C
|
B:CYS489
|
4.1
|
32.1
|
1.0
|
O
|
B:CYS489
|
4.1
|
33.2
|
1.0
|
N
|
B:GLY492
|
4.5
|
31.1
|
1.0
|
C
|
B:LEU488
|
4.5
|
38.9
|
1.0
|
N
|
B:MET491
|
4.6
|
31.4
|
1.0
|
CB
|
B:VAL289
|
4.8
|
30.9
|
1.0
|
N
|
B:LEU488
|
4.8
|
37.3
|
1.0
|
SG
|
B:CYS443
|
4.8
|
29.7
|
1.0
|
CA
|
B:MET491
|
4.9
|
31.7
|
1.0
|
N
|
B:ALA490
|
4.9
|
32.9
|
1.0
|
CG
|
B:MET491
|
4.9
|
33.0
|
1.0
|
SG
|
B:CYS446
|
4.9
|
36.4
|
1.0
|
SG
|
B:CYS449
|
5.0
|
32.0
|
1.0
|
|
Iron binding site 4 out
of 12 in 6vw7
Go back to
Iron Binding Sites List in 6vw7
Iron binding site 4 out
of 12 in the Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe601
b:33.3
occ:1.00
|
FE2
|
B:SF4601
|
0.0
|
33.3
|
1.0
|
S4
|
B:SF4601
|
2.2
|
34.4
|
1.0
|
S1
|
B:SF4601
|
2.3
|
34.1
|
1.0
|
S3
|
B:SF4601
|
2.3
|
31.8
|
1.0
|
SG
|
B:CYS446
|
2.4
|
36.4
|
1.0
|
FE4
|
B:SF4601
|
2.7
|
29.6
|
1.0
|
FE3
|
B:SF4601
|
2.7
|
30.9
|
1.0
|
FE1
|
B:SF4601
|
2.7
|
28.5
|
1.0
|
CB
|
B:CYS446
|
3.1
|
36.2
|
1.0
|
N
|
B:CYS446
|
3.7
|
36.1
|
1.0
|
S2
|
B:SF4601
|
3.9
|
30.1
|
1.0
|
N
|
B:LEU488
|
3.9
|
37.3
|
1.0
|
CA
|
B:CYS446
|
4.0
|
37.2
|
1.0
|
CB
|
B:LEU488
|
4.3
|
41.7
|
1.0
|
CB
|
B:CYS449
|
4.3
|
31.5
|
1.0
|
CB
|
B:LYS445
|
4.4
|
40.1
|
1.0
|
N
|
B:CYS489
|
4.5
|
34.6
|
1.0
|
C
|
B:LYS445
|
4.5
|
36.2
|
1.0
|
CA
|
B:LEU488
|
4.5
|
37.7
|
1.0
|
N
|
B:LYS445
|
4.7
|
33.1
|
1.0
|
SG
|
B:CYS449
|
4.7
|
32.0
|
1.0
|
O
|
B:HOH735
|
4.7
|
43.2
|
1.0
|
CA
|
B:LYS445
|
4.8
|
36.5
|
1.0
|
SG
|
B:CYS443
|
4.8
|
29.7
|
1.0
|
C
|
B:SER487
|
4.9
|
37.3
|
1.0
|
C
|
B:LEU488
|
4.9
|
38.9
|
1.0
|
CA
|
B:SER487
|
4.9
|
34.8
|
1.0
|
SG
|
B:CYS489
|
5.0
|
32.4
|
1.0
|
O
|
B:CYS446
|
5.0
|
38.8
|
1.0
|
CG
|
B:LEU488
|
5.0
|
48.4
|
1.0
|
C
|
B:CYS446
|
5.0
|
37.8
|
1.0
|
|
Iron binding site 5 out
of 12 in 6vw7
Go back to
Iron Binding Sites List in 6vw7
Iron binding site 5 out
of 12 in the Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe601
b:30.9
occ:1.00
|
FE3
|
B:SF4601
|
0.0
|
30.9
|
1.0
|
S1
|
B:SF4601
|
2.2
|
34.1
|
1.0
|
S2
|
B:SF4601
|
2.3
|
30.1
|
1.0
|
S4
|
B:SF4601
|
2.3
|
34.4
|
1.0
|
SG
|
B:CYS443
|
2.4
|
29.7
|
1.0
|
FE2
|
B:SF4601
|
2.7
|
33.3
|
1.0
|
FE4
|
B:SF4601
|
2.7
|
29.6
|
1.0
|
FE1
|
B:SF4601
|
2.7
|
28.5
|
1.0
|
CB
|
B:CYS443
|
3.4
|
31.4
|
1.0
|
N
|
B:CYS443
|
3.7
|
32.4
|
1.0
|
CA
|
B:CYS443
|
3.9
|
33.1
|
1.0
|
S3
|
B:SF4601
|
3.9
|
31.8
|
1.0
|
N
|
B:GLY444
|
4.0
|
31.1
|
1.0
|
N
|
B:LYS445
|
4.0
|
33.1
|
1.0
|
CB
|
B:LYS445
|
4.1
|
40.1
|
1.0
|
C
|
B:CYS443
|
4.2
|
33.2
|
1.0
|
CG2
|
B:VAL289
|
4.3
|
27.1
|
1.0
|
CA
|
B:LYS445
|
4.7
|
36.5
|
1.0
|
OG
|
B:SER442
|
4.7
|
31.3
|
1.0
|
SG
|
B:CYS489
|
4.8
|
32.4
|
1.0
|
N
|
B:CYS446
|
4.8
|
36.1
|
1.0
|
CB
|
B:VAL289
|
4.8
|
30.9
|
1.0
|
C
|
B:SER442
|
4.8
|
32.6
|
1.0
|
SG
|
B:CYS446
|
4.9
|
36.4
|
1.0
|
CG1
|
B:VAL271
|
4.9
|
31.2
|
1.0
|
C
|
B:GLY444
|
4.9
|
34.2
|
1.0
|
SG
|
B:CYS449
|
4.9
|
32.0
|
1.0
|
CA
|
B:GLY444
|
5.0
|
32.3
|
1.0
|
|
Iron binding site 6 out
of 12 in 6vw7
Go back to
Iron Binding Sites List in 6vw7
Iron binding site 6 out
of 12 in the Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe601
b:29.6
occ:1.00
|
FE4
|
B:SF4601
|
0.0
|
29.6
|
1.0
|
S2
|
B:SF4601
|
2.3
|
30.1
|
1.0
|
S1
|
B:SF4601
|
2.3
|
34.1
|
1.0
|
S3
|
B:SF4601
|
2.3
|
31.8
|
1.0
|
SG
|
B:CYS449
|
2.5
|
32.0
|
1.0
|
FE1
|
B:SF4601
|
2.7
|
28.5
|
1.0
|
FE2
|
B:SF4601
|
2.7
|
33.3
|
1.0
|
FE3
|
B:SF4601
|
2.7
|
30.9
|
1.0
|
CB
|
B:CYS449
|
3.1
|
31.5
|
1.0
|
S4
|
B:SF4601
|
3.8
|
34.4
|
1.0
|
OG
|
B:SER442
|
3.9
|
31.3
|
1.0
|
N
|
B:GLY492
|
4.0
|
31.1
|
1.0
|
CG
|
B:MET491
|
4.2
|
33.0
|
1.0
|
CB
|
B:MET491
|
4.2
|
30.5
|
1.0
|
N
|
B:CYS443
|
4.5
|
32.4
|
1.0
|
CA
|
B:GLY492
|
4.5
|
29.8
|
1.0
|
CB
|
B:SER442
|
4.5
|
31.3
|
1.0
|
CA
|
B:SER442
|
4.5
|
32.1
|
1.0
|
CA
|
B:CYS449
|
4.5
|
36.8
|
1.0
|
SG
|
B:CYS489
|
4.7
|
32.4
|
1.0
|
CB
|
B:CYS446
|
4.7
|
36.2
|
1.0
|
C
|
B:MET491
|
4.9
|
30.7
|
1.0
|
SG
|
B:CYS446
|
4.9
|
36.4
|
1.0
|
|
Iron binding site 7 out
of 12 in 6vw7
Go back to
Iron Binding Sites List in 6vw7
Iron binding site 7 out
of 12 in the Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe301
b:21.0
occ:1.00
|
FE1
|
C:FES301
|
0.0
|
21.0
|
1.0
|
S2
|
C:FES301
|
2.2
|
23.8
|
1.0
|
S1
|
C:FES301
|
2.2
|
23.0
|
1.0
|
SG
|
C:CYS86
|
2.4
|
21.7
|
1.0
|
SG
|
C:CYS91
|
2.4
|
21.7
|
1.0
|
FE2
|
C:FES301
|
2.8
|
18.9
|
1.0
|
CB
|
C:CYS86
|
3.3
|
22.0
|
1.0
|
CB
|
C:CYS91
|
3.4
|
22.5
|
1.0
|
N
|
C:CYS91
|
3.9
|
21.7
|
1.0
|
CA
|
C:CYS127
|
4.0
|
20.7
|
1.0
|
CA
|
C:CYS91
|
4.2
|
23.9
|
1.0
|
N
|
C:LEU128
|
4.4
|
20.2
|
1.0
|
N
|
C:CYS127
|
4.5
|
19.7
|
1.0
|
CB
|
C:ALA136
|
4.6
|
20.8
|
1.0
|
CB
|
C:CYS127
|
4.6
|
19.2
|
1.0
|
SG
|
C:CYS127
|
4.7
|
20.5
|
1.0
|
CA
|
C:CYS86
|
4.7
|
22.9
|
1.0
|
C
|
C:CYS127
|
4.7
|
22.1
|
1.0
|
CB
|
C:ALA88
|
4.8
|
19.9
|
1.0
|
CA
|
C:CYS131
|
4.8
|
21.2
|
1.0
|
O
|
C:HOH405
|
4.9
|
25.8
|
1.0
|
O
|
C:ALA88
|
4.9
|
22.5
|
1.0
|
N
|
C:ALA88
|
4.9
|
21.5
|
1.0
|
CB
|
C:ALA90
|
5.0
|
21.0
|
1.0
|
SG
|
C:CYS131
|
5.0
|
18.9
|
1.0
|
C
|
C:ALA90
|
5.0
|
22.9
|
1.0
|
|
Iron binding site 8 out
of 12 in 6vw7
Go back to
Iron Binding Sites List in 6vw7
Iron binding site 8 out
of 12 in the Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe301
b:18.9
occ:1.00
|
FE2
|
C:FES301
|
0.0
|
18.9
|
1.0
|
S2
|
C:FES301
|
2.2
|
23.8
|
1.0
|
S1
|
C:FES301
|
2.2
|
23.0
|
1.0
|
SG
|
C:CYS131
|
2.4
|
18.9
|
1.0
|
SG
|
C:CYS127
|
2.5
|
20.5
|
1.0
|
FE1
|
C:FES301
|
2.8
|
21.0
|
1.0
|
CB
|
C:CYS131
|
3.3
|
16.6
|
1.0
|
CB
|
C:CYS127
|
3.4
|
19.2
|
1.0
|
CA
|
C:CYS131
|
3.6
|
21.2
|
1.0
|
CA
|
C:CYS127
|
3.6
|
20.7
|
1.0
|
N
|
C:CYS131
|
3.8
|
18.3
|
1.0
|
N
|
C:LEU128
|
4.0
|
20.2
|
1.0
|
N
|
C:GLY129
|
4.1
|
20.2
|
1.0
|
N
|
D:GLY189
|
4.1
|
20.5
|
1.0
|
C
|
C:CYS127
|
4.2
|
22.1
|
1.0
|
N
|
C:GLN130
|
4.3
|
19.4
|
1.0
|
CA
|
D:SER188
|
4.4
|
20.5
|
1.0
|
CB
|
C:ALA90
|
4.5
|
21.0
|
1.0
|
SG
|
C:CYS86
|
4.5
|
21.7
|
1.0
|
C
|
C:GLN130
|
4.5
|
19.8
|
1.0
|
CA
|
C:GLY129
|
4.6
|
18.7
|
1.0
|
SG
|
C:CYS91
|
4.7
|
21.7
|
1.0
|
N
|
C:CYS127
|
4.8
|
19.7
|
1.0
|
CB
|
D:SER188
|
4.8
|
20.3
|
1.0
|
C
|
D:SER188
|
4.8
|
22.1
|
1.0
|
C
|
C:GLY129
|
4.8
|
18.8
|
1.0
|
C
|
C:LEU128
|
5.0
|
20.2
|
1.0
|
|
Iron binding site 9 out
of 12 in 6vw7
Go back to
Iron Binding Sites List in 6vw7
Iron binding site 9 out
of 12 in the Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe601
b:32.6
occ:1.00
|
FE1
|
D:SF4601
|
0.0
|
32.6
|
1.0
|
S4
|
D:SF4601
|
2.3
|
36.6
|
1.0
|
S3
|
D:SF4601
|
2.3
|
35.2
|
1.0
|
S2
|
D:SF4601
|
2.3
|
35.0
|
1.0
|
SG
|
D:CYS489
|
2.4
|
31.6
|
1.0
|
FE4
|
D:SF4601
|
2.7
|
25.8
|
1.0
|
FE2
|
D:SF4601
|
2.7
|
33.5
|
1.0
|
FE3
|
D:SF4601
|
2.8
|
31.0
|
1.0
|
CB
|
D:CYS489
|
3.4
|
27.2
|
1.0
|
N
|
D:CYS489
|
3.6
|
32.0
|
1.0
|
CA
|
D:CYS489
|
3.9
|
31.7
|
1.0
|
S1
|
D:SF4601
|
3.9
|
37.0
|
1.0
|
CB
|
D:MET491
|
4.0
|
30.5
|
1.0
|
CG2
|
D:VAL289
|
4.0
|
28.3
|
1.0
|
O
|
D:CYS489
|
4.1
|
31.6
|
1.0
|
C
|
D:CYS489
|
4.2
|
32.2
|
1.0
|
N
|
D:GLY492
|
4.4
|
25.3
|
1.0
|
C
|
D:LEU488
|
4.5
|
36.9
|
1.0
|
N
|
D:MET491
|
4.6
|
29.5
|
1.0
|
CB
|
D:VAL289
|
4.7
|
32.3
|
1.0
|
N
|
D:LEU488
|
4.8
|
36.3
|
1.0
|
CA
|
D:MET491
|
4.8
|
28.3
|
1.0
|
CG
|
D:MET491
|
4.9
|
31.2
|
1.0
|
SG
|
D:CYS443
|
4.9
|
32.9
|
1.0
|
CG2
|
D:VAL271
|
4.9
|
26.0
|
0.7
|
SG
|
D:CYS449
|
5.0
|
27.9
|
1.0
|
SG
|
D:CYS446
|
5.0
|
37.0
|
1.0
|
N
|
D:ALA490
|
5.0
|
33.4
|
1.0
|
|
Iron binding site 10 out
of 12 in 6vw7
Go back to
Iron Binding Sites List in 6vw7
Iron binding site 10 out
of 12 in the Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Formate Dehydrogenase Fdsabg Subcomplex Fdsbg From C. Necator - Nadh Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe601
b:33.5
occ:1.00
|
FE2
|
D:SF4601
|
0.0
|
33.5
|
1.0
|
S1
|
D:SF4601
|
2.3
|
37.0
|
1.0
|
S4
|
D:SF4601
|
2.3
|
36.6
|
1.0
|
S3
|
D:SF4601
|
2.3
|
35.2
|
1.0
|
SG
|
D:CYS446
|
2.4
|
37.0
|
1.0
|
FE3
|
D:SF4601
|
2.7
|
31.0
|
1.0
|
FE4
|
D:SF4601
|
2.7
|
25.8
|
1.0
|
FE1
|
D:SF4601
|
2.7
|
32.6
|
1.0
|
CB
|
D:CYS446
|
3.1
|
31.4
|
1.0
|
N
|
D:CYS446
|
3.8
|
30.3
|
1.0
|
S2
|
D:SF4601
|
3.9
|
35.0
|
1.0
|
N
|
D:LEU488
|
3.9
|
36.3
|
1.0
|
CA
|
D:CYS446
|
4.0
|
33.0
|
1.0
|
CB
|
D:LEU488
|
4.2
|
45.4
|
1.0
|
CB
|
D:CYS449
|
4.3
|
26.4
|
1.0
|
CB
|
D:LYS445
|
4.3
|
34.8
|
1.0
|
C
|
D:LYS445
|
4.5
|
33.8
|
1.0
|
N
|
D:CYS489
|
4.5
|
32.0
|
1.0
|
CA
|
D:LEU488
|
4.5
|
40.0
|
1.0
|
SG
|
D:CYS449
|
4.7
|
27.9
|
1.0
|
N
|
D:LYS445
|
4.7
|
28.6
|
1.0
|
CA
|
D:LYS445
|
4.7
|
31.0
|
1.0
|
SG
|
D:CYS443
|
4.8
|
32.9
|
1.0
|
C
|
D:SER487
|
4.9
|
34.8
|
1.0
|
C
|
D:LEU488
|
4.9
|
36.9
|
1.0
|
CA
|
D:SER487
|
4.9
|
32.4
|
1.0
|
|
Reference:
T.Young,
D.Niks,
S.Hakopian,
T.K.Tam,
R.Hille,
G.Blaha.
Crystallographic and Kinetic Analyses of the Fdsbg Subcomplex of the Cytosolic Formate Dehydrogenase Fdsabg From Cupriavidus Necator Journal of Biological 2020CHEMISTRY.
Page generated: Wed Aug 7 13:35:36 2024
|