Iron in PDB 6wti: The Cryo-Em Structure of the Ubiquinol Oxidase From Escherichia Coli

The structure of The Cryo-Em Structure of the Ubiquinol Oxidase From Escherichia Coli also contains other interesting chemical elements:

Copper

(Cu)

1 atom

The binding sites of Iron atom in the The Cryo-Em Structure of the Ubiquinol Oxidase From Escherichia Coli (pdb code 6wti). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the The Cryo-Em Structure of the Ubiquinol Oxidase From Escherichia Coli, PDB code: 6wti:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the The Cryo-Em Structure of the Ubiquinol Oxidase From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Cryo-Em Structure of the Ubiquinol Oxidase From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1001 b:24.0 occ:1.00 FE A:HEM1001 0.0 24.0 1.0 ND A:HEM1001 1.9 24.0 1.0 NA A:HEM1001 2.0 24.0 1.0 NC A:HEM1001 2.1 24.0 1.0 NB A:HEM1001 2.1 24.0 1.0 NE2 A:HIS421 2.4 23.3 1.0 NE2 A:HIS106 2.6 24.2 1.0 C4D A:HEM1001 2.9 24.0 1.0 C1D A:HEM1001 2.9 24.0 1.0 C1A A:HEM1001 3.0 24.0 1.0 C4A A:HEM1001 3.0 24.0 1.0 C4C A:HEM1001 3.0 24.0 1.0 C1B A:HEM1001 3.1 24.0 1.0 C4B A:HEM1001 3.1 24.0 1.0 C1C A:HEM1001 3.1 24.0 1.0 CE1 A:HIS421 3.2 23.3 1.0 CHA A:HEM1001 3.3 24.0 1.0 CHD A:HEM1001 3.4 24.0 1.0 CD2 A:HIS421 3.4 23.3 1.0 CHB A:HEM1001 3.5 24.0 1.0 CD2 A:HIS106 3.5 24.2 1.0 CHC A:HEM1001 3.5 24.0 1.0 CE1 A:HIS106 3.6 24.2 1.0 C3D A:HEM1001 4.1 24.0 1.0 C2D A:HEM1001 4.1 24.0 1.0 C2A A:HEM1001 4.2 24.0 1.0 C3A A:HEM1001 4.2 24.0 1.0 C3C A:HEM1001 4.3 24.0 1.0 C2C A:HEM1001 4.3 24.0 1.0 C2B A:HEM1001 4.3 24.0 1.0 C3B A:HEM1001 4.3 24.0 1.0 ND1 A:HIS421 4.4 23.3 1.0 CG A:HIS421 4.5 23.3 1.0 CG A:HIS106 4.7 24.2 1.0 ND1 A:HIS106 4.7 24.2 1.0

Iron binding site 2 out of 2 in the The Cryo-Em Structure of the Ubiquinol Oxidase From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Cryo-Em Structure of the Ubiquinol Oxidase From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1002 b:24.5 occ:1.00 FE A:HEO1002 0.0 24.5 1.0 NC A:HEO1002 1.9 24.5 1.0 ND A:HEO1002 1.9 24.5 1.0 NA A:HEO1002 1.9 24.5 1.0 NB A:HEO1002 2.0 24.5 1.0 NE2 A:HIS419 2.7 23.5 1.0 C4A A:HEO1002 2.9 24.5 1.0 C4C A:HEO1002 3.0 24.5 1.0 C4D A:HEO1002 3.0 24.5 1.0 C1D A:HEO1002 3.0 24.5 1.0 C1C A:HEO1002 3.0 24.5 1.0 C1B A:HEO1002 3.0 24.5 1.0 C1A A:HEO1002 3.1 24.5 1.0 C4B A:HEO1002 3.1 24.5 1.0 CE1 A:HIS419 3.4 23.5 1.0 CHB A:HEO1002 3.6 24.5 1.0 CHD A:HEO1002 3.6 24.5 1.0 CHA A:HEO1002 3.7 24.5 1.0 CD2 A:HIS419 3.8 23.5 1.0 CHC A:HEO1002 3.8 24.5 1.0 C3C A:HEO1002 4.2 24.5 1.0 C2C A:HEO1002 4.2 24.5 1.0 C3A A:HEO1002 4.2 24.5 1.0 C2D A:HEO1002 4.3 24.5 1.0 C3D A:HEO1002 4.3 24.5 1.0 C2A A:HEO1002 4.3 24.5 1.0 C2B A:HEO1002 4.3 24.5 1.0 C3B A:HEO1002 4.4 24.5 1.0 ND1 A:HIS419 4.6 23.5 1.0 CG2 A:VAL423 4.6 23.9 1.0 CU A:CU1003 4.8 32.5 1.0 CG A:HIS419 4.8 23.5 1.0

C.C.Su, M.Lyu, C.E.Morgan, J.R.Bolla, C.V.Robinson, E.W.Yu. A 'Build and Retrieve' Methodology to Simultaneously Solve Cryo-Em Structures of Membrane Proteins. Nat.Methods V. 18 69 2021.
ISSN: ESSN 1548-7105
PubMed: 33408407
DOI: 10.1038/S41592-020-01021-2