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Iron in PDB 6wyf: Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution

Enzymatic activity of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution

All present enzymatic activity of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution:
1.16.3.1;

Protein crystallography data

The structure of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution, PDB code: 6wyf was solved by J.B.Bailey, L.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.73 / 1.25
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 179.940, 179.940, 179.940, 90.00, 90.00, 90.00
R / Rfree (%) 11.3 / 13.1

Other elements in 6wyf:

The structure of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution also contains other interesting chemical elements:

Calcium (Ca) 11 atoms
Sodium (Na) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution (pdb code 6wyf). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution, PDB code: 6wyf:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 6wyf

Go back to Iron Binding Sites List in 6wyf
Iron binding site 1 out of 2 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe213

b:24.9
occ:0.36
O A:HOH418 2.1 43.2 1.0
OE2 A:GLU62 2.2 27.9 1.0
OE1 A:GLU27 2.2 23.9 1.0
O A:HOH345 2.5 44.7 1.0
FE A:FE214 2.5 28.5 0.4
OE1 A:GLU62 2.8 31.0 1.0
CD A:GLU62 2.8 24.8 1.0
ND1 A:HIS65 3.1 29.8 0.6
ND1 A:HIS65 3.2 30.8 0.4
CD A:GLU27 3.2 20.8 1.0
HG11 A:VAL110 3.4 21.5 1.0
OE1 A:GLN141 3.6 26.6 1.0
OE2 A:GLU27 3.6 24.0 1.0
HA A:GLU62 3.9 12.0 1.0
CE1 A:HIS65 3.9 33.2 0.6
HE1 A:HIS65 4.0 39.9 0.6
HB2 A:HIS65 4.0 18.1 0.6
HB3 A:HIS65 4.0 23.4 0.4
CE1 A:HIS65 4.0 33.0 0.4
HE1 A:HIS65 4.0 39.5 0.4
HB2 A:HIS65 4.0 23.4 0.4
HB3 A:HIS65 4.1 18.1 0.6
CG A:HIS65 4.1 24.6 0.6
CG A:HIS65 4.1 26.8 0.4
CG A:GLU62 4.2 15.6 1.0
CG1 A:VAL110 4.3 17.9 1.0
CB A:HIS65 4.3 19.5 0.4
CB A:HIS65 4.3 15.1 0.6
HG12 A:VAL110 4.4 21.5 1.0
HB3 A:GLU27 4.4 13.2 1.0
HA A:GLU27 4.5 10.8 1.0
CD A:GLN141 4.5 21.5 1.0
HB3 A:GLU62 4.5 15.2 1.0
CG A:GLU27 4.5 14.7 1.0
OE2 A:GLU107 4.6 23.3 1.0
HD2 A:TYR137 4.6 19.4 1.0
O A:HOH338 4.7 36.9 1.0
HG3 A:GLU62 4.7 18.7 1.0
HG2 A:GLU62 4.7 18.7 1.0
HG21 A:VAL110 4.7 18.9 1.0
CB A:GLU62 4.7 12.7 1.0
CA A:GLU62 4.8 10.0 1.0
HE22 A:GLN141 4.8 29.0 1.0
HG13 A:VAL110 4.8 21.5 1.0
HB3 A:ALA30 4.8 10.9 1.0
HD11 A:LEU114 4.9 21.3 1.0
CB A:GLU27 4.9 11.0 1.0
HG3 A:GLU27 4.9 17.6 1.0
HE2 A:TYR137 4.9 20.0 1.0

Iron binding site 2 out of 2 in 6wyf

Go back to Iron Binding Sites List in 6wyf
Iron binding site 2 out of 2 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe214

b:28.5
occ:0.42
O A:HOH345 2.0 44.7 1.0
OE1 A:GLU62 2.3 31.0 1.0
OE2 A:GLU107 2.5 23.3 1.0
FE A:FE213 2.5 24.9 0.4
O A:HOH338 2.6 36.9 1.0
OE1 A:GLN141 2.6 26.6 1.0
OE1 A:GLU107 3.1 24.6 1.0
CD A:GLU107 3.1 19.3 1.0
CD A:GLU62 3.2 24.8 1.0
HE22 A:GLN141 3.3 29.0 1.0
OE2 A:GLU62 3.5 27.9 1.0
O A:HOH418 3.5 43.2 1.0
CD A:GLN141 3.5 21.5 1.0
NE2 A:GLN141 3.8 24.2 1.0
HE1 A:HIS65 4.0 39.9 0.6
O A:HOH371 4.2 31.8 1.0
HG11 A:VAL110 4.2 21.5 1.0
ND1 A:HIS65 4.4 29.8 0.6
CE1 A:HIS65 4.5 33.2 0.6
CG A:GLU62 4.6 15.6 1.0
HE2 A:TYR34 4.6 15.0 1.0
HA A:GLN141 4.6 17.1 1.0
HE1 A:HIS65 4.6 39.5 0.4
CG A:GLU107 4.6 13.2 1.0
HE21 A:GLN141 4.6 29.0 1.0
OE1 A:GLU27 4.6 23.9 1.0
ND1 A:HIS65 4.6 30.8 0.4
HB3 A:ALA144 4.6 15.2 1.0
HG2 A:GLU62 4.7 18.7 1.0
HB2 A:ALA144 4.7 15.2 1.0
HB1 A:ALA144 4.8 15.2 1.0
HB A:VAL110 4.8 16.9 1.0
HH A:TYR34 4.8 23.8 1.0
HG3 A:GLU62 4.8 18.7 1.0
HA A:GLU107 4.9 12.8 1.0
HG21 A:VAL110 4.9 18.9 1.0
CG A:GLN141 4.9 21.3 1.0
HG12 A:VAL110 4.9 21.5 1.0
HG3 A:GLU107 4.9 15.9 1.0
CB A:ALA144 4.9 12.7 1.0
CG1 A:VAL110 5.0 17.9 1.0
HG2 A:GLN141 5.0 25.5 1.0
HB3 A:GLU107 5.0 14.0 1.0
CE1 A:HIS65 5.0 33.0 0.4

Reference:

K.Han, J.B.Bailey, L.Zhang, F.A.Tezcan. Anisotropic Dynamics and Mechanics of Macromolecular Crystals Containing Lattice-Patterned Polymer Networks. J.Am.Chem.Soc. V. 142 19402 2020.
ISSN: ESSN 1520-5126
PubMed: 33124805
DOI: 10.1021/JACS.0C10065
Page generated: Wed Aug 7 14:30:43 2024

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