Atomistry » Iron » PDB 6wnc-6xa3 » 6wyg
Atomistry »
  Iron »
    PDB 6wnc-6xa3 »
      6wyg »

Iron in PDB 6wyg: Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent

Enzymatic activity of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent

All present enzymatic activity of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent:
1.16.3.1;

Protein crystallography data

The structure of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent, PDB code: 6wyg was solved by J.B.Bailey, L.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.07 / 2.27
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 126.810, 126.810, 281.285, 90.00, 90.00, 120.00
R / Rfree (%) 19.8 / 26

Other elements in 6wyg:

The structure of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent also contains other interesting chemical elements:

Calcium (Ca) 8 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent (pdb code 6wyg). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 9 binding sites of Iron where determined in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent, PDB code: 6wyg:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Iron binding site 1 out of 9 in 6wyg

Go back to Iron Binding Sites List in 6wyg
Iron binding site 1 out of 9 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:56.9
occ:0.40
 OE1 A:GLU62 2.5 77.7 1.0
OE1 A:GLU27 2.5 67.3 1.0
FE A:FE202 2.8 46.6 0.2
OE2 A:GLU62 3.0 77.5 1.0
CD A:GLU62 3.1 61.8 1.0
OE2 A:GLU27 3.1 60.3 1.0
CD A:GLU27 3.1 59.4 1.0
ND1 A:HIS65 3.2 71.7 1.0
NE2 A:GLN141 3.3 71.8 1.0
CE1 A:HIS65 4.0 71.5 1.0
OE1 A:GLN141 4.0 75.5 1.0
CD A:GLN141 4.1 63.8 1.0
CG A:HIS65 4.2 61.6 1.0
CG1 A:VAL110 4.3 61.0 1.0
OE2 A:GLU107 4.3 63.3 1.0
CB A:HIS65 4.4 54.2 1.0
CG A:GLU62 4.6 49.9 1.0
CG A:GLU27 4.6 46.2 1.0
CD2 A:TYR137 4.7 52.9 1.0
CE2 A:TYR137 5.0 50.3 1.0
OE1 A:GLU107 5.0 75.9 1.0

Iron binding site 2 out of 9 in 6wyg

Go back to Iron Binding Sites List in 6wyg
Iron binding site 2 out of 9 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe202

b:46.6
occ:0.25
 OE1 A:GLU107 2.5 75.9 1.0
OE2 A:GLU62 2.5 77.5 1.0
OE1 A:GLU62 2.8 77.7 1.0
FE A:FE201 2.8 56.9 0.4
CD A:GLU62 2.9 61.8 1.0
OE2 A:GLU107 3.0 63.3 1.0
CD A:GLU107 3.1 60.8 1.0
OE1 A:GLN141 3.4 75.5 1.0
NE2 A:GLN141 3.9 71.8 1.0
CD A:GLN141 4.0 63.8 1.0
CG A:GLU62 4.2 49.9 1.0
ND1 A:HIS65 4.4 71.7 1.0
CG A:GLU107 4.6 49.5 1.0
CB A:ALA144 4.6 39.0 1.0
CE1 A:HIS65 4.8 71.5 1.0
OE1 A:GLU27 4.8 67.3 1.0

Iron binding site 3 out of 9 in 6wyg

Go back to Iron Binding Sites List in 6wyg
Iron binding site 3 out of 9 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe203

b:71.3
occ:1.00
 NE2 D:HIS173 2.9 50.6 1.0
NE2 A:HIS173 3.1 52.1 1.0
NE2 C:HIS173 3.1 48.2 1.0
NE2 B:HIS173 3.1 46.2 1.0
CE1 D:HIS173 3.8 56.9 1.0
CE1 C:HIS173 3.8 54.9 1.0
CE1 B:HIS173 3.8 42.7 1.0
CE1 A:HIS173 3.8 47.1 1.0
CD2 A:LEU169 3.9 40.3 1.0
CD2 D:LEU169 3.9 40.7 1.0
CD2 D:HIS173 4.0 47.2 1.0
CD2 B:LEU169 4.1 44.6 1.0
CD2 C:LEU169 4.1 44.5 1.0
CD2 A:HIS173 4.1 47.7 1.0
CD2 C:HIS173 4.2 47.5 1.0
CD2 B:HIS173 4.2 46.8 1.0
CD1 A:LEU169 4.8 41.5 1.0
CD1 C:LEU169 4.9 46.8 1.0
CG A:LEU169 4.9 45.8 1.0
ND1 D:HIS173 4.9 55.8 1.0
ND1 C:HIS173 5.0 50.5 1.0

Iron binding site 4 out of 9 in 6wyg

Go back to Iron Binding Sites List in 6wyg
Iron binding site 4 out of 9 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:67.6
occ:0.40
 OE1 B:GLU62 2.3 65.5 1.0
OE2 B:GLU62 2.4 66.3 1.0
CD B:GLU62 2.7 56.0 1.0
OE1 B:GLU27 2.7 60.8 1.0
ND1 B:HIS65 2.8 74.6 1.0
NE2 B:GLN141 3.0 62.3 1.0
FE B:FE202 3.1 42.1 0.2
CE1 B:HIS65 3.5 76.2 1.0
CD B:GLU27 3.7 59.2 1.0
CG B:HIS65 3.8 67.9 1.0
OE2 B:GLU27 3.9 51.8 1.0
CG B:GLU62 4.1 46.3 1.0
CB B:HIS65 4.2 52.0 1.0
CD B:GLN141 4.3 63.6 1.0
OE2 B:GLU107 4.4 64.6 1.0
CG1 B:VAL110 4.5 47.2 1.0
O B:HOH306 4.6 53.3 1.0
NE2 B:HIS65 4.7 80.7 1.0
CA B:GLU62 4.7 48.1 1.0
CB B:GLU62 4.8 39.2 1.0
CD2 B:HIS65 4.8 77.9 1.0
OE1 B:GLU107 4.9 65.4 1.0

Iron binding site 5 out of 9 in 6wyg

Go back to Iron Binding Sites List in 6wyg
Iron binding site 5 out of 9 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe202

b:42.1
occ:0.25
 OE1 B:GLU62 2.3 65.5 1.0
O B:HOH306 2.5 53.3 1.0
OE2 B:GLU107 2.6 64.6 1.0
OE1 B:GLU107 2.6 65.4 1.0
CD B:GLU107 2.9 58.1 1.0
NE2 B:GLN141 3.0 62.3 1.0
FE B:FE201 3.1 67.6 0.4
CD B:GLU62 3.5 56.0 1.0
CB B:ALA144 4.0 43.1 1.0
CD B:GLN141 4.0 63.6 1.0
OE2 B:GLU61 4.1 86.5 1.0
OE2 B:GLU62 4.1 66.3 1.0
CG B:GLU107 4.3 54.8 1.0
OE1 B:GLN141 4.4 71.7 1.0
CG B:GLU62 4.5 46.3 1.0
CE1 B:HIS65 4.7 76.2 1.0
OE1 B:GLN58 4.7 77.3 1.0
ND1 B:HIS65 4.7 74.6 1.0
OH B:TYR34 5.0 61.8 1.0

Iron binding site 6 out of 9 in 6wyg

Go back to Iron Binding Sites List in 6wyg
Iron binding site 6 out of 9 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:83.0
occ:0.40
 OE1 C:GLU27 2.4 66.2 1.0
FE C:FE202 2.7 40.6 0.2
OE2 C:GLU62 2.7 64.4 1.0
OE1 C:GLU62 2.9 75.4 1.0
OE1 C:GLN141 3.1 69.9 1.0
CD C:GLU62 3.2 62.7 1.0
CD C:GLU27 3.3 66.0 1.0
OE2 C:GLU27 3.4 69.0 1.0
ND1 C:HIS65 3.8 73.2 1.0
CB C:HIS65 4.1 51.7 1.0
CG1 C:VAL110 4.2 54.2 1.0
CG C:HIS65 4.2 67.1 1.0
CD C:GLN141 4.2 65.0 1.0
O C:HOH310 4.3 62.9 1.0
CD2 C:TYR137 4.5 64.3 1.0
CE2 C:TYR137 4.6 65.6 1.0
CG C:GLU62 4.6 55.6 1.0
OE2 C:GLU107 4.6 66.7 1.0
CG C:GLU27 4.7 54.5 1.0
CE1 C:HIS65 4.7 77.8 1.0
CG C:GLN141 4.9 65.3 1.0
CA C:GLU62 5.0 51.0 1.0

Iron binding site 7 out of 9 in 6wyg

Go back to Iron Binding Sites List in 6wyg
Iron binding site 7 out of 9 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe202

b:40.6
occ:0.25
 OE1 C:GLU62 2.1 75.4 1.0
OE1 C:GLN141 2.3 69.9 1.0
O C:HOH310 2.4 62.9 1.0
OE2 C:GLU107 2.4 66.7 1.0
FE C:FE201 2.7 83.0 0.4
OE1 C:GLU107 2.7 67.9 1.0
CD C:GLU107 2.9 59.4 1.0
CD C:GLU62 3.0 62.7 1.0
OE2 C:GLU62 3.3 64.4 1.0
CD C:GLN141 3.4 65.0 1.0
NE2 C:GLN141 4.1 56.9 1.0
CG C:GLU62 4.3 55.6 1.0
CG C:GLU107 4.4 52.0 1.0
CG C:GLN141 4.6 65.3 1.0
OE1 C:GLU27 4.7 66.2 1.0
CG1 C:VAL110 4.8 54.2 1.0
CB C:ALA144 5.0 43.0 1.0

Iron binding site 8 out of 9 in 6wyg

Go back to Iron Binding Sites List in 6wyg
Iron binding site 8 out of 9 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:71.1
occ:0.40
 OE1 D:GLN141 2.3 84.7 1.0
FE D:FE202 2.4 58.0 0.2
OE2 D:GLU62 2.4 64.7 1.0
OE1 D:GLU62 2.7 71.9 1.0
OE1 D:GLU27 2.8 73.5 1.0
CD D:GLU62 2.9 64.7 1.0
ND1 D:HIS65 3.2 74.7 1.0
CD D:GLN141 3.3 82.1 1.0
OE2 D:GLU27 3.4 71.3 1.0
CD D:GLU27 3.5 71.5 1.0
CE1 D:HIS65 3.7 76.9 1.0
NE2 D:GLN141 3.8 77.1 1.0
OE2 D:GLU107 4.0 77.3 1.0
O D:HOH312 4.2 63.1 1.0
OE1 D:GLU107 4.3 71.8 1.0
CG D:HIS65 4.4 72.5 1.0
CG D:GLU62 4.4 63.6 1.0
CG1 D:VAL110 4.4 57.1 1.0
CD D:GLU107 4.6 71.3 1.0
CG D:GLN141 4.6 78.8 1.0
CB D:HIS65 4.8 67.6 1.0
NE2 D:HIS65 5.0 79.4 1.0

Iron binding site 9 out of 9 in 6wyg

Go back to Iron Binding Sites List in 6wyg
Iron binding site 9 out of 9 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe202

b:58.0
occ:0.25
 O D:HOH312 2.2 63.1 1.0
OE2 D:GLU107 2.4 77.3 1.0
FE D:FE201 2.4 71.1 0.4
OE1 D:GLU62 2.4 71.9 1.0
OE1 D:GLN141 2.5 84.7 1.0
OE1 D:GLU107 2.7 71.8 1.0
CD D:GLU107 2.8 71.3 1.0
CD D:GLN141 3.2 82.1 1.0
CD D:GLU62 3.3 64.7 1.0
NE2 D:GLN141 3.3 77.1 1.0
OE2 D:GLU62 3.5 64.7 1.0
CG D:GLU107 4.2 69.8 1.0
CB D:ALA144 4.5 51.4 1.0
CE1 D:HIS65 4.6 76.9 1.0
CG D:GLN141 4.6 78.8 1.0
CG D:GLU62 4.6 63.6 1.0
ND1 D:HIS65 4.7 74.7 1.0

Reference:

K.Han, J.B.Bailey, L.Zhang, F.A.Tezcan. Anisotropic Dynamics and Mechanics of Macromolecular Crystals Containing Lattice-Patterned Polymer Networks. J.Am.Chem.Soc. V. 142 19402 2020.
ISSN: ESSN 1520-5126
PubMed: 33124805
DOI: 10.1021/JACS.0C10065
Page generated: Wed Aug 7 14:30:52 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy