Atomistry » Iron » PDB 6wnc-6xa3 » 6wz2
Atomistry »
  Iron »
    PDB 6wnc-6xa3 »
      6wz2 »

Iron in PDB 6wz2: Co-Bound Structure of An Engineered Protein Trimer, TRICYT3

Protein crystallography data

The structure of Co-Bound Structure of An Engineered Protein Trimer, TRICYT3, PDB code: 6wz2 was solved by F.A.Tezcan, A.Kakkis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.05 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 48.252, 78.105, 49.562, 90.00, 106.64, 90.00
R / Rfree (%) 17.5 / 21.8

Other elements in 6wz2:

The structure of Co-Bound Structure of An Engineered Protein Trimer, TRICYT3 also contains other interesting chemical elements:

Cobalt (Co) 1 atom
Chlorine (Cl) 5 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Co-Bound Structure of An Engineered Protein Trimer, TRICYT3 (pdb code 6wz2). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the Co-Bound Structure of An Engineered Protein Trimer, TRICYT3, PDB code: 6wz2:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in 6wz2

Go back to Iron Binding Sites List in 6wz2
Iron binding site 1 out of 3 in the Co-Bound Structure of An Engineered Protein Trimer, TRICYT3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Co-Bound Structure of An Engineered Protein Trimer, TRICYT3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:16.7
occ:1.00
FE A:HEC201 0.0 16.7 1.0
NA A:HEC201 2.0 15.3 1.0
ND A:HEC201 2.0 15.6 1.0
NC A:HEC201 2.1 12.9 1.0
NB A:HEC201 2.1 16.3 1.0
NE2 A:HIS102 2.2 19.1 1.0
SD A:MET7 2.4 16.4 1.0
C4A A:HEC201 3.0 20.3 1.0
C1A A:HEC201 3.0 16.9 1.0
C1D A:HEC201 3.1 19.4 1.0
C4C A:HEC201 3.1 16.6 1.0
C4D A:HEC201 3.1 17.0 1.0
C1C A:HEC201 3.1 18.9 1.0
C4B A:HEC201 3.1 19.1 1.0
C1B A:HEC201 3.1 19.2 1.0
CE1 A:HIS102 3.1 21.1 1.0
CD2 A:HIS102 3.2 15.3 1.0
CHD A:HEC201 3.4 14.6 1.0
CHA A:HEC201 3.4 17.0 1.0
CHB A:HEC201 3.4 15.5 1.0
CHC A:HEC201 3.5 17.6 1.0
CE A:MET7 3.5 18.0 1.0
CG A:MET7 3.5 16.4 1.0
ND1 A:HIS102 4.2 18.1 1.0
C2A A:HEC201 4.3 18.3 1.0
C3A A:HEC201 4.3 18.7 1.0
C2D A:HEC201 4.3 16.6 1.0
C3D A:HEC201 4.3 17.7 1.0
C3C A:HEC201 4.3 17.4 1.0
CG A:HIS102 4.3 19.2 1.0
C2C A:HEC201 4.3 15.8 1.0
CB A:MET7 4.3 17.4 1.0
C3B A:HEC201 4.3 18.2 1.0
C2B A:HEC201 4.3 19.2 1.0

Iron binding site 2 out of 3 in 6wz2

Go back to Iron Binding Sites List in 6wz2
Iron binding site 2 out of 3 in the Co-Bound Structure of An Engineered Protein Trimer, TRICYT3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Co-Bound Structure of An Engineered Protein Trimer, TRICYT3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:21.1
occ:1.00
FE B:HEC201 0.0 21.1 1.0
NC B:HEC201 2.0 18.9 1.0
ND B:HEC201 2.0 21.6 1.0
NB B:HEC201 2.1 16.9 1.0
NA B:HEC201 2.1 25.6 1.0
NE2 B:HIS102 2.2 23.8 1.0
SD B:MET7 2.4 21.6 1.0
C1C B:HEC201 3.0 19.6 1.0
C4B B:HEC201 3.1 20.2 1.0
C4D B:HEC201 3.1 26.5 1.0
C1D B:HEC201 3.1 24.6 1.0
C1A B:HEC201 3.1 25.0 1.0
C4C B:HEC201 3.1 20.9 1.0
C1B B:HEC201 3.1 19.0 1.0
CD2 B:HIS102 3.1 22.9 1.0
C4A B:HEC201 3.1 27.6 1.0
CE1 B:HIS102 3.2 26.5 1.0
CHC B:HEC201 3.4 19.9 1.0
CHA B:HEC201 3.4 23.8 1.0
CE B:MET7 3.4 16.2 1.0
CHD B:HEC201 3.5 21.2 1.0
CG B:MET7 3.5 18.4 1.0
CHB B:HEC201 3.5 20.7 1.0
C2C B:HEC201 4.3 22.0 1.0
CB B:MET7 4.3 20.9 1.0
C2D B:HEC201 4.3 21.6 1.0
C3D B:HEC201 4.3 27.4 1.0
C3C B:HEC201 4.3 22.0 1.0
C2A B:HEC201 4.3 25.5 1.0
C3B B:HEC201 4.3 19.6 1.0
CG B:HIS102 4.3 25.2 1.0
ND1 B:HIS102 4.3 26.4 1.0
C2B B:HEC201 4.3 20.2 1.0
C3A B:HEC201 4.3 25.1 1.0

Iron binding site 3 out of 3 in 6wz2

Go back to Iron Binding Sites List in 6wz2
Iron binding site 3 out of 3 in the Co-Bound Structure of An Engineered Protein Trimer, TRICYT3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Co-Bound Structure of An Engineered Protein Trimer, TRICYT3 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:16.9
occ:1.00
FE C:HEC201 0.0 16.9 1.0
NA C:HEC201 2.0 17.9 1.0
ND C:HEC201 2.0 13.4 1.0
NC C:HEC201 2.0 15.8 1.0
NB C:HEC201 2.1 10.7 1.0
NE2 C:HIS102 2.2 15.3 1.0
SD C:MET7 2.4 16.2 1.0
C1D C:HEC201 3.0 17.3 1.0
C1A C:HEC201 3.0 16.5 1.0
C4C C:HEC201 3.1 15.5 1.0
C4D C:HEC201 3.1 18.8 1.0
C4A C:HEC201 3.1 15.8 1.0
C1C C:HEC201 3.1 16.5 1.0
C1B C:HEC201 3.1 15.0 1.0
CD2 C:HIS102 3.1 16.5 1.0
C4B C:HEC201 3.1 14.3 1.0
CE1 C:HIS102 3.2 18.1 1.0
CHD C:HEC201 3.4 15.6 1.0
CHA C:HEC201 3.4 19.3 1.0
CG C:MET7 3.4 19.0 1.0
CHB C:HEC201 3.4 13.0 1.0
CE C:MET7 3.5 12.8 1.0
CHC C:HEC201 3.5 14.7 1.0
CB C:MET7 4.2 16.6 1.0
C2A C:HEC201 4.3 20.7 1.0
C2D C:HEC201 4.3 18.0 1.0
C3A C:HEC201 4.3 16.5 1.0
C3D C:HEC201 4.3 18.0 1.0
CG C:HIS102 4.3 18.8 1.0
C3C C:HEC201 4.3 14.2 1.0
ND1 C:HIS102 4.3 17.8 1.0
C2C C:HEC201 4.3 14.2 1.0
C2B C:HEC201 4.3 15.6 1.0
C3B C:HEC201 4.3 13.9 1.0
NH1 C:ARG106 4.7 16.3 1.0

Reference:

F.A.Tezcan, A.Kakkis, D.Gagnon, J.Esselborn, R.D.Britt. Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites. Angew.Chem.Int.Ed.Engl. 2020.
ISSN: ESSN 1521-3773
PubMed: 32830423
DOI: 10.1002/ANIE.202009226
Page generated: Wed Aug 7 14:32:25 2024

Last articles

F in 4J53
F in 4J1K
F in 4J1I
F in 4J52
F in 4J1H
F in 4J1E
F in 4J1F
F in 4J1C
F in 4J17
F in 4J0Z
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy