Iron in PDB 6x1o: WOR5 From Pyrococcus Furiosus, As Crystallized

Protein crystallography data

The structure of WOR5 From Pyrococcus Furiosus, As Crystallized, PDB code: 6x1o was solved by L.G.Mathew, W.N.Lanzilotta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.19 / 2.09
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 123.092, 126.821, 141.289, 90, 90, 90
R / Rfree (%) 17.9 / 20.5

Other elements in 6x1o:

The structure of WOR5 From Pyrococcus Furiosus, As Crystallized also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Tungsten (W) 2 atoms
Magnesium (Mg) 6 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40;

Binding sites:

The binding sites of Iron atom in the WOR5 From Pyrococcus Furiosus, As Crystallized (pdb code 6x1o). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 40 binding sites of Iron where determined in the WOR5 From Pyrococcus Furiosus, As Crystallized, PDB code: 6x1o:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 40 in 6x1o

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Iron binding site 1 out of 40 in the WOR5 From Pyrococcus Furiosus, As Crystallized


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of WOR5 From Pyrococcus Furiosus, As Crystallized within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe703

b:30.2
occ:1.00
 FE1 A:SF4703 0.0 30.2 1.0
S3 A:SF4703 2.1 34.9 1.0
S4 A:SF4703 2.2 31.4 1.0
S2 A:SF4703 2.2 33.6 1.0
SG A:CYS306 2.4 29.0 1.0
FE3 A:SF4703 2.8 31.8 1.0
FE4 A:SF4703 2.8 29.8 1.0
FE2 A:SF4703 2.8 30.6 1.0
CB A:CYS306 3.3 32.2 1.0
S1 A:SF4703 3.7 35.5 1.0
N A:CYS306 3.8 28.9 1.0
CA A:CYS306 4.0 32.8 1.0
CG A:MET307 4.1 27.1 1.0
CD2 A:PHE497 4.2 31.1 1.0
N A:MET307 4.3 31.3 1.0
C A:CYS306 4.4 31.5 1.0
OD2 A:ASP299 4.4 29.6 1.0
SG A:CYS302 4.6 31.6 1.0
SG A:CYS495 4.9 30.5 1.0
C A:ASN305 4.9 30.6 1.0
CE2 A:PHE497 4.9 28.7 1.0
SD A:MET307 5.0 36.0 1.0
CB A:PHE497 5.0 30.2 1.0

Iron binding site 2 out of 40 in 6x1o

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Iron binding site 2 out of 40 in the WOR5 From Pyrococcus Furiosus, As Crystallized


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of WOR5 From Pyrococcus Furiosus, As Crystallized within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe703

b:30.6
occ:1.00
 FE2 A:SF4703 0.0 30.6 1.0
S1 A:SF4703 2.1 35.5 1.0
S4 A:SF4703 2.2 31.4 1.0
S3 A:SF4703 2.2 34.9 1.0
SG A:CYS495 2.3 30.5 1.0
FE4 A:SF4703 2.8 29.8 1.0
FE1 A:SF4703 2.8 30.2 1.0
FE3 A:SF4703 2.9 31.8 1.0
CB A:CYS495 3.2 30.2 1.0
S2 A:SF4703 3.8 33.6 1.0
CB A:PHE497 4.3 30.2 1.0
CD2 A:PHE497 4.3 31.1 1.0
OG A:SER96 4.4 37.6 1.0
SG A:CYS302 4.6 31.6 1.0
OD2 A:ASP299 4.7 29.6 1.0
CG A:PHE497 4.7 32.6 1.0
NZ A:LYS77 4.7 35.5 1.0
CA A:CYS495 4.7 29.4 1.0
SG A:CYS306 4.8 29.0 1.0
N13 A:PTE702 4.9 33.9 1.0
CE A:LYS77 5.0 33.8 1.0

Iron binding site 3 out of 40 in 6x1o

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Iron binding site 3 out of 40 in the WOR5 From Pyrococcus Furiosus, As Crystallized


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of WOR5 From Pyrococcus Furiosus, As Crystallized within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe703

b:31.8
occ:1.00
 FE3 A:SF4703 0.0 31.8 1.0
OD2 A:ASP299 1.9 29.6 1.0
S1 A:SF4703 2.2 35.5 1.0
S4 A:SF4703 2.2 31.4 1.0
S2 A:SF4703 2.2 33.6 1.0
FE4 A:SF4703 2.8 29.8 1.0
FE1 A:SF4703 2.8 30.2 1.0
FE2 A:SF4703 2.9 30.6 1.0
CG A:ASP299 2.9 32.4 1.0
CB A:ASP299 3.4 26.9 1.0
OG A:SER96 3.5 37.6 1.0
S3 A:SF4703 3.7 34.9 1.0
N A:ASP299 4.0 25.6 1.0
OD1 A:ASP299 4.1 32.0 1.0
CB A:SER96 4.1 32.2 1.0
CA A:ASP299 4.4 31.4 1.0
CG A:MET307 4.5 27.1 1.0
CE1 A:HIS195 4.5 34.4 1.0
SG A:CYS302 4.6 31.6 1.0
SG A:CYS306 4.9 29.0 1.0
O A:MET76 5.0 35.1 1.0
SG A:CYS495 5.0 30.5 1.0
CB A:CYS302 5.0 26.1 1.0

Iron binding site 4 out of 40 in 6x1o

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Iron binding site 4 out of 40 in the WOR5 From Pyrococcus Furiosus, As Crystallized


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of WOR5 From Pyrococcus Furiosus, As Crystallized within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe703

b:29.8
occ:1.00
 FE4 A:SF4703 0.0 29.8 1.0
SG A:CYS302 2.0 31.6 1.0
S2 A:SF4703 2.1 33.6 1.0
S3 A:SF4703 2.2 34.9 1.0
S1 A:SF4703 2.2 35.5 1.0
FE3 A:SF4703 2.8 31.8 1.0
FE1 A:SF4703 2.8 30.2 1.0
FE2 A:SF4703 2.8 30.6 1.0
CB A:CYS302 3.1 26.1 1.0
S4 A:SF4703 3.7 31.4 1.0
N A:ASN305 4.3 29.1 1.0
CB A:VAL304 4.4 33.1 1.0
OD2 A:ASP299 4.4 29.6 1.0
CA A:CYS302 4.5 29.9 1.0
N A:ASP299 4.6 25.6 1.0
CA A:GLY75 4.7 31.7 1.0
N A:CYS306 4.8 28.9 1.0
CB A:ASP299 4.8 26.9 1.0
SG A:CYS495 5.0 30.5 1.0
CA A:ASN305 5.0 32.1 1.0

Iron binding site 5 out of 40 in 6x1o

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Iron binding site 5 out of 40 in the WOR5 From Pyrococcus Furiosus, As Crystallized


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of WOR5 From Pyrococcus Furiosus, As Crystallized within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe902

b:29.5
occ:1.00
 FE1 B:SF4902 0.0 29.5 1.0
S2 B:SF4902 2.1 30.6 1.0
S3 B:SF4902 2.1 30.8 1.0
S4 B:SF4902 2.1 31.3 1.0
SG B:CYS24 2.4 28.2 1.0
FE2 B:SF4902 2.8 28.9 1.0
FE4 B:SF4902 2.8 28.8 1.0
FE3 B:SF4902 2.8 28.2 1.0
CB B:CYS24 3.3 26.8 1.0
S1 B:SF4902 3.7 30.9 1.0
N B:CYS24 4.0 29.6 1.0
CG2 B:VAL45 4.2 27.9 1.0
CA B:CYS24 4.3 30.8 1.0
N B:ARG22 4.5 29.4 1.0
CA B:ARG22 4.5 30.9 1.0
CD1 B:LEU139 4.6 31.1 1.0
N B:LEU23 4.6 31.5 1.0
SG B:CYS21 4.7 29.0 1.0
SG B:CYS18 4.8 26.7 1.0
C B:ARG22 4.9 28.8 1.0
SG B:CYS131 5.0 30.0 1.0

Iron binding site 6 out of 40 in 6x1o

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Iron binding site 6 out of 40 in the WOR5 From Pyrococcus Furiosus, As Crystallized


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of WOR5 From Pyrococcus Furiosus, As Crystallized within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe902

b:28.9
occ:1.00
 FE2 B:SF4902 0.0 28.9 1.0
S4 B:SF4902 2.2 31.3 1.0
S1 B:SF4902 2.2 30.9 1.0
S3 B:SF4902 2.2 30.8 1.0
SG B:CYS131 2.4 30.0 1.0
FE1 B:SF4902 2.8 29.5 1.0
FE3 B:SF4902 2.8 28.2 1.0
FE4 B:SF4902 2.9 28.8 1.0
CB B:CYS131 3.2 29.7 1.0
S2 B:SF4902 3.7 30.6 1.0
CB B:ALA138 4.0 32.7 1.0
CA B:CYS131 4.0 29.4 1.0
CG B:LEU139 4.4 31.2 1.0
CB B:HIS136 4.4 30.5 1.0
CD1 B:LEU139 4.4 31.1 1.0
N B:ALA138 4.6 30.2 1.0
CA B:ALA138 4.8 30.8 1.0
SG B:CYS21 4.8 29.0 1.0
N B:LEU139 4.8 29.9 1.0
CD2 B:HIS136 4.9 32.0 1.0
SG B:CYS24 5.0 28.2 1.0
CG B:HIS136 5.0 28.6 1.0

Iron binding site 7 out of 40 in 6x1o

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Iron binding site 7 out of 40 in the WOR5 From Pyrococcus Furiosus, As Crystallized


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of WOR5 From Pyrococcus Furiosus, As Crystallized within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe902

b:28.2
occ:1.00
 FE3 B:SF4902 0.0 28.2 1.0
S4 B:SF4902 2.2 31.3 1.0
S2 B:SF4902 2.2 30.6 1.0
S1 B:SF4902 2.2 30.9 1.0
SG B:CYS18 2.3 26.7 1.0
FE2 B:SF4902 2.8 28.9 1.0
FE1 B:SF4902 2.8 29.5 1.0
FE4 B:SF4902 2.9 28.8 1.0
CB B:CYS18 3.3 25.0 1.0
CA B:CYS18 3.6 32.3 1.0
S3 B:SF4902 3.7 30.8 1.0
N B:SER19 4.0 28.6 1.0
CG B:PRO55 4.2 26.9 1.0
N B:GLY20 4.2 26.1 1.0
C B:CYS18 4.2 27.5 1.0
CB B:ALA138 4.2 32.7 1.0
CG2 B:VAL45 4.7 27.9 1.0
OG B:SER19 4.8 27.6 1.0
CA B:GLY20 4.8 27.0 1.0
N B:CYS18 4.9 29.8 1.0
N B:CYS21 4.9 27.6 1.0
SG B:CYS131 5.0 30.0 1.0
SG B:CYS24 5.0 28.2 1.0

Iron binding site 8 out of 40 in 6x1o

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Iron binding site 8 out of 40 in the WOR5 From Pyrococcus Furiosus, As Crystallized


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of WOR5 From Pyrococcus Furiosus, As Crystallized within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe902

b:28.8
occ:1.00
 FE4 B:SF4902 0.0 28.8 1.0
S2 B:SF4902 2.1 30.6 1.0
S3 B:SF4902 2.2 30.8 1.0
S1 B:SF4902 2.2 30.9 1.0
SG B:CYS21 2.3 29.0 1.0
FE1 B:SF4902 2.8 29.5 1.0
FE3 B:SF4902 2.9 28.2 1.0
FE2 B:SF4902 2.9 28.9 1.0
CB B:CYS21 3.6 27.7 1.0
N B:ARG22 3.6 29.4 1.0
N B:CYS21 3.6 27.6 1.0
S4 B:SF4902 3.7 31.3 1.0
OG B:SER19 3.8 27.6 1.0
CA B:CYS21 4.0 28.4 1.0
C B:CYS21 4.2 29.4 1.0
CD2 B:HIS136 4.2 32.0 1.0
N B:LEU23 4.3 31.5 1.0
CA B:ARG22 4.5 30.9 1.0
N B:GLY20 4.5 26.1 1.0
C B:GLY20 4.6 27.8 1.0
SG B:CYS18 4.8 26.7 1.0
SG B:CYS24 4.8 28.2 1.0
N B:SER19 4.8 28.6 1.0
CG B:HIS136 4.8 28.6 1.0
C B:ARG22 4.9 28.8 1.0
NE2 B:HIS136 4.9 32.2 1.0
SG B:CYS131 5.0 30.0 1.0
CA B:GLY20 5.0 27.0 1.0

Iron binding site 9 out of 40 in 6x1o

Go back to Iron Binding Sites List in 6x1o
Iron binding site 9 out of 40 in the WOR5 From Pyrococcus Furiosus, As Crystallized


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of WOR5 From Pyrococcus Furiosus, As Crystallized within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe903

b:33.0
occ:1.00
 FE1 B:SF4903 0.0 33.0 1.0
S2 B:SF4903 2.1 32.6 1.0
S3 B:SF4903 2.2 32.1 1.0
S4 B:SF4903 2.2 29.8 1.0
SG B:CYS66 2.4 33.9 1.0
FE2 B:SF4903 2.7 30.2 1.0
FE3 B:SF4903 2.8 32.6 1.0
FE4 B:SF4903 2.9 30.1 1.0
CB B:CYS66 3.1 33.9 1.0
S1 B:SF4903 3.7 31.7 1.0
N B:CYS66 3.8 34.0 1.0
CA B:CYS66 4.1 35.3 1.0
CG2 B:VAL84 4.3 31.3 1.0
SG B:CYS58 4.6 32.7 1.0
N B:PRO65 4.8 37.2 1.0
CD B:PRO65 4.8 33.0 1.0
CA B:TYR64 4.9 35.3 1.0
C B:TYR64 4.9 37.0 1.0
SG B:CYS61 5.0 31.7 1.0

Iron binding site 10 out of 40 in 6x1o

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Iron binding site 10 out of 40 in the WOR5 From Pyrococcus Furiosus, As Crystallized


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of WOR5 From Pyrococcus Furiosus, As Crystallized within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe903

b:30.2
occ:1.00
 FE2 B:SF4903 0.0 30.2 1.0
S1 B:SF4903 2.1 31.7 1.0
S4 B:SF4903 2.2 29.8 1.0
S3 B:SF4903 2.2 32.1 1.0
SG B:CYS58 2.4 32.7 1.0
FE1 B:SF4903 2.7 33.0 1.0
FE3 B:SF4903 2.8 32.6 1.0
FE4 B:SF4903 2.8 30.1 1.0
CB B:CYS58 3.4 30.4 1.0
S2 B:SF4903 3.7 32.6 1.0
CA B:CYS58 3.8 27.7 1.0
N B:VAL59 3.9 28.2 1.0
N B:GLN60 4.1 31.6 1.0
C B:CYS58 4.4 29.2 1.0
CG1 B:VAL105 4.7 29.2 1.0
CA B:GLN60 4.7 32.7 1.0
CG2 B:ILE117 4.7 31.9 1.0
CB B:VAL105 4.7 28.9 1.0
CG2 B:VAL84 4.7 31.3 1.0
SG B:CYS61 4.8 31.7 1.0
N B:CYS61 4.8 28.9 1.0
SG B:CYS66 4.8 33.9 1.0
CG2 B:VAL105 4.9 31.4 1.0
C B:VAL59 5.0 32.2 1.0

Reference:

L.G.Mathew, W.N.Lanzilotta. A Novel Function For WOR5 Revealed Through in Situ Crystallography and Biochemical Analysis To Be Published.
Page generated: Thu Nov 25 09:27:56 2021

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