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Iron in PDB 6xam: Crystal Structure of Nzeb in Complex with Cyclo-(L-Trp-L-Homoalanine)

Protein crystallography data

The structure of Crystal Structure of Nzeb in Complex with Cyclo-(L-Trp-L-Homoalanine), PDB code: 6xam was solved by V.V.Shende, Y.Khatri, S.A.Newmister, J.N.Sanders, P.Lindovska, F.Yu, T.J.Doyon, J.Kim, M.Movassaghi, K.N.Houk, D.H.Sherman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.26 / 1.48
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 55.607, 56.203, 56.058, 90, 101.83, 90
R / Rfree (%) 18.8 / 22.1

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Nzeb in Complex with Cyclo-(L-Trp-L-Homoalanine) (pdb code 6xam). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Nzeb in Complex with Cyclo-(L-Trp-L-Homoalanine), PDB code: 6xam:

Iron binding site 1 out of 1 in 6xam

Go back to Iron Binding Sites List in 6xam
Iron binding site 1 out of 1 in the Crystal Structure of Nzeb in Complex with Cyclo-(L-Trp-L-Homoalanine)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Nzeb in Complex with Cyclo-(L-Trp-L-Homoalanine) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe801

b:15.4
occ:1.00
FE A:HEM801 0.0 15.4 1.0
NB A:HEM801 2.0 13.9 1.0
NA A:HEM801 2.0 14.0 1.0
ND A:HEM801 2.0 12.2 1.0
NC A:HEM801 2.1 14.3 1.0
SG A:CYS351 2.3 15.7 1.0
O A:HOH966 3.0 20.5 1.0
C4A A:HEM801 3.0 13.6 1.0
C4B A:HEM801 3.1 14.4 1.0
C1C A:HEM801 3.1 14.5 1.0
C1D A:HEM801 3.1 14.0 1.0
C1A A:HEM801 3.1 13.6 1.0
C4C A:HEM801 3.1 14.4 1.0
C1B A:HEM801 3.1 14.0 1.0
C4D A:HEM801 3.1 15.3 1.0
CB A:CYS351 3.4 13.3 1.0
CHD A:HEM801 3.4 14.5 1.0
CHC A:HEM801 3.4 16.1 1.0
CHB A:HEM801 3.4 14.2 1.0
CHA A:HEM801 3.5 15.1 1.0
CA A:CYS351 4.1 16.3 1.0
C3A A:HEM801 4.3 14.0 1.0
C3B A:HEM801 4.3 15.9 1.0
C3C A:HEM801 4.3 15.2 1.0
C2C A:HEM801 4.3 15.5 1.0
O A:ALA240 4.3 17.1 1.0
C2A A:HEM801 4.3 13.8 1.0
C2B A:HEM801 4.3 14.0 1.0
C2D A:HEM801 4.3 14.3 1.0
C3D A:HEM801 4.3 15.2 1.0
N A:GLY353 4.8 16.2 1.0
C A:CYS351 4.8 17.0 1.0
CD A:PRO352 4.8 18.4 1.0
C8 A:WMA802 4.9 16.0 1.0
N A:PRO352 5.0 14.6 1.0

Reference:

V.V.Shende, Y.Khatri, S.A.Newmister, J.N.Sanders, P.Lindovska, F.Yu, T.J.Doyon, J.Kim, M.Movassaghi, K.N.Houk, D.H.Sherman. Crystal Structure of Nzeb in Complex with Cyclo-(L-Trp-L-Homoalanine) To Be Published.
Page generated: Wed Aug 6 15:53:57 2025

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