Iron in PDB 6xkz: R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B)

Enzymatic activity of R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B)

All present enzymatic activity of R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B):
1.9.3.1; 7.1.1.8;

Other elements in 6xkz:

The structure of R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B) also contains other interesting chemical elements:

Copper (Cu) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Iron atom in the R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B) (pdb code 6xkz). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 15 binding sites of Iron where determined in the R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B), PDB code: 6xkz:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 15 in 6xkz

Go back to Iron Binding Sites List in 6xkz
Iron binding site 1 out of 15 in the R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe501

b:74.8
occ:1.00
FE1 E:FES501 0.0 74.8 1.0
S1 E:FES501 2.2 74.8 1.0
S2 E:FES501 2.2 74.8 1.0
SG E:CYS153 2.3 107.2 0.2
SG E:CYS133 2.3 105.9 0.2
CB E:CYS133 2.8 103.8 0.2
FE2 E:FES501 3.1 74.8 1.0
CB E:CYS153 3.6 108.3 0.2
CB E:CYS138 3.8 104.2 0.2
CB E:HIS135 3.9 108.1 0.2
CA E:CYS133 4.2 102.4 0.2
N E:CYS138 4.3 102.3 0.2
ND1 E:HIS135 4.5 110.7 0.2
CB E:CYS155 4.5 109.1 0.2
CA E:CYS138 4.6 102.5 0.2
N E:LEU136 4.6 105.3 0.2
SG E:CYS138 4.6 105.4 0.2
OG E:SER158 4.6 111.4 0.2
CG E:HIS135 4.7 109.6 0.2
C E:CYS133 4.7 102.4 0.2
N E:HIS135 4.7 105.4 0.2
CA E:HIS135 4.8 106.7 0.2
O E:CYS133 4.8 102.0 0.2
O E:CYS138 4.9 101.1 0.2
CA E:CYS153 4.9 108.5 0.2
N E:GLY137 5.0 102.5 0.2
C E:CYS138 5.0 101.6 0.2

Iron binding site 2 out of 15 in 6xkz

Go back to Iron Binding Sites List in 6xkz
Iron binding site 2 out of 15 in the R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe501

b:74.8
occ:1.00
FE2 E:FES501 0.0 74.8 1.0
ND1 E:HIS135 2.1 110.7 0.2
ND1 E:HIS156 2.1 111.9 0.2
S2 E:FES501 2.2 74.8 1.0
S1 E:FES501 2.2 74.8 1.0
CG E:HIS156 3.0 113.8 0.2
CE1 E:HIS135 3.0 112.0 0.2
FE1 E:FES501 3.1 74.8 1.0
CG E:HIS135 3.2 109.6 0.2
CB E:HIS156 3.2 114.3 0.2
CE1 E:HIS156 3.2 112.0 0.2
CB E:HIS135 3.5 108.1 0.2
N E:HIS156 3.7 112.9 0.2
CB E:CYS155 3.9 109.1 0.2
CA E:HIS156 4.1 114.7 0.2
CD2 E:HIS156 4.2 114.9 0.2
NE2 E:HIS135 4.2 111.9 0.2
NE2 E:HIS156 4.2 113.8 0.2
C E:CYS155 4.2 112.5 0.2
CD2 E:HIS135 4.3 110.4 0.2
SG E:CYS153 4.4 107.2 0.2
N E:LEU136 4.7 105.3 0.2
CA E:CYS155 4.7 110.7 0.2
OG E:SER158 4.7 111.4 0.2
SG E:CYS133 4.8 105.9 0.2
O E:CYS155 4.9 113.7 0.2
CA E:HIS135 4.9 106.7 0.2
CB E:LEU136 4.9 106.1 0.2
C E:HIS156 5.0 115.6 0.2
CG E:LEU136 5.0 107.7 0.2

Iron binding site 3 out of 15 in 6xkz

Go back to Iron Binding Sites List in 6xkz
Iron binding site 3 out of 15 in the R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe501

b:46.9
occ:1.00
FE C:HEC501 0.0 46.9 1.0
NE2 C:HIS97 2.0 46.5 1.0
NC C:HEC501 2.0 51.4 1.0
NE2 C:HIS198 2.0 41.0 1.0
ND C:HEC501 2.0 51.7 1.0
NB C:HEC501 2.0 51.7 1.0
NA C:HEC501 2.1 51.4 1.0
CE1 C:HIS97 2.8 84.7 1.0
CE1 C:HIS198 3.0 54.2 1.0
C4C C:HEC501 3.0 52.6 1.0
C1C C:HEC501 3.0 52.0 1.0
C1D C:HEC501 3.0 52.3 1.0
C4B C:HEC501 3.0 52.2 1.0
CD2 C:HIS97 3.1 79.5 1.0
C1B C:HEC501 3.1 51.7 1.0
C4D C:HEC501 3.1 52.3 1.0
CD2 C:HIS198 3.1 40.2 1.0
C4A C:HEC501 3.1 51.4 1.0
C1A C:HEC501 3.1 51.7 1.0
CHD C:HEC501 3.4 53.0 1.0
CHC C:HEC501 3.4 52.9 1.0
CHB C:HEC501 3.5 51.8 1.0
CHA C:HEC501 3.5 52.1 1.0
ND1 C:HIS97 3.9 92.4 1.0
CG C:HIS97 4.1 85.4 1.0
ND1 C:HIS198 4.1 46.1 1.0
C3C C:HEC501 4.2 52.3 1.0
CG C:HIS198 4.2 73.3 1.0
C2C C:HEC501 4.2 51.7 1.0
C3B C:HEC501 4.3 51.1 1.0
C2D C:HEC501 4.3 52.5 1.0
C2B C:HEC501 4.3 51.1 1.0
C3D C:HEC501 4.3 52.0 1.0
C2A C:HEC501 4.3 51.9 1.0
C3A C:HEC501 4.3 51.6 1.0
OE1 C:GLN58 5.0 12.1 1.0

Iron binding site 4 out of 15 in 6xkz

Go back to Iron Binding Sites List in 6xkz
Iron binding site 4 out of 15 in the R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe502

b:49.1
occ:1.00
FE C:HEC502 0.0 49.1 1.0
ND C:HEC502 2.0 54.4 1.0
NE2 C:HIS212 2.0 40.9 1.0
NA C:HEC502 2.0 54.1 1.0
NE2 C:HIS111 2.0 40.4 1.0
NC C:HEC502 2.1 53.5 1.0
NB C:HEC502 2.1 54.3 1.0
CE1 C:HIS212 2.9 36.6 1.0
C4D C:HEC502 3.0 54.3 1.0
C1D C:HEC502 3.0 54.8 1.0
CD2 C:HIS111 3.0 36.8 1.0
C1A C:HEC502 3.0 54.8 1.0
CE1 C:HIS111 3.0 36.3 1.0
C4C C:HEC502 3.1 54.2 1.0
CD2 C:HIS212 3.1 37.0 1.0
C4A C:HEC502 3.1 53.6 1.0
C1C C:HEC502 3.1 54.2 1.0
C1B C:HEC502 3.1 54.4 1.0
C4B C:HEC502 3.2 53.6 1.0
CHA C:HEC502 3.4 54.5 1.0
CHD C:HEC502 3.4 54.8 1.0
CHB C:HEC502 3.5 53.5 1.0
CHC C:HEC502 3.5 53.9 1.0
ND1 C:HIS212 4.1 37.1 1.0
ND1 C:HIS111 4.1 36.8 1.0
CG C:HIS212 4.2 36.9 1.0
CG C:HIS111 4.2 36.8 1.0
C3D C:HEC502 4.2 54.4 1.0
C2D C:HEC502 4.2 54.7 1.0
C2A C:HEC502 4.3 54.0 1.0
C3A C:HEC502 4.3 54.2 1.0
C3C C:HEC502 4.3 54.3 1.0
C2C C:HEC502 4.3 54.5 1.0
C2B C:HEC502 4.4 53.7 1.0
C3B C:HEC502 4.4 52.9 1.0

Iron binding site 5 out of 15 in 6xkz

Go back to Iron Binding Sites List in 6xkz
Iron binding site 5 out of 15 in the R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe501

b:43.4
occ:1.00
FE D:HEC501 0.0 43.4 1.0
NE2 D:HIS38 2.0 57.4 1.0
NB D:HEC501 2.0 47.2 1.0
NC D:HEC501 2.0 48.4 1.0
NA D:HEC501 2.1 48.5 1.0
ND D:HEC501 2.1 48.0 1.0
SD D:MET183 2.1 55.8 1.0
CD2 D:HIS38 2.9 52.2 1.0
CE1 D:HIS38 3.0 52.2 1.0
C4B D:HEC501 3.0 48.2 1.0
C1C D:HEC501 3.1 48.8 1.0
C1B D:HEC501 3.1 47.7 1.0
C4A D:HEC501 3.1 48.4 1.0
C1A D:HEC501 3.1 48.5 1.0
C4C D:HEC501 3.1 48.0 1.0
C4D D:HEC501 3.1 48.1 1.0
C1D D:HEC501 3.1 47.9 1.0
CHC D:HEC501 3.4 49.0 1.0
CE D:MET183 3.4 45.4 1.0
CHB D:HEC501 3.4 48.3 1.0
CHD D:HEC501 3.4 47.8 1.0
CHA D:HEC501 3.4 48.8 1.0
CG D:MET183 3.5 45.7 1.0
CG D:HIS38 4.0 51.7 1.0
ND1 D:HIS38 4.1 51.7 1.0
CB D:MET183 4.2 45.7 1.0
C3B D:HEC501 4.3 48.4 1.0
C2B D:HEC501 4.3 48.3 1.0
C3A D:HEC501 4.3 48.1 1.0
C2A D:HEC501 4.3 47.9 1.0
C2C D:HEC501 4.3 48.1 1.0
C3C D:HEC501 4.3 48.2 1.0
C3D D:HEC501 4.3 47.9 1.0
C2D D:HEC501 4.3 48.0 1.0

Iron binding site 6 out of 15 in 6xkz

Go back to Iron Binding Sites List in 6xkz
Iron binding site 6 out of 15 in the R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B) within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Fe501

b:46.9
occ:1.00
FE P:HEC501 0.0 46.9 1.0
NE2 P:HIS97 2.0 46.5 1.0
NC P:HEC501 2.0 51.4 1.0
NE2 P:HIS198 2.0 41.0 1.0
ND P:HEC501 2.0 51.7 1.0
NB P:HEC501 2.0 51.7 1.0
NA P:HEC501 2.1 51.4 1.0
CE1 P:HIS97 2.8 84.7 1.0
CE1 P:HIS198 3.0 54.2 1.0
C4C P:HEC501 3.0 52.6 1.0
C1C P:HEC501 3.0 52.0 1.0
C1D P:HEC501 3.0 52.3 1.0
C4B P:HEC501 3.0 52.2 1.0
CD2 P:HIS97 3.1 79.5 1.0
C1B P:HEC501 3.1 51.7 1.0
C4D P:HEC501 3.1 52.3 1.0
CD2 P:HIS198 3.1 40.2 1.0
C4A P:HEC501 3.1 51.4 1.0
C1A P:HEC501 3.1 51.7 1.0
CHD P:HEC501 3.4 53.0 1.0
CHC P:HEC501 3.4 52.9 1.0
CHB P:HEC501 3.5 51.8 1.0
CHA P:HEC501 3.5 52.1 1.0
ND1 P:HIS97 3.9 92.4 1.0
CG P:HIS97 4.1 85.4 1.0
ND1 P:HIS198 4.1 46.1 1.0
C3C P:HEC501 4.2 52.3 1.0
CG P:HIS198 4.2 73.3 1.0
C2C P:HEC501 4.2 51.7 1.0
C3B P:HEC501 4.3 51.1 1.0
C2D P:HEC501 4.3 52.5 1.0
C2B P:HEC501 4.3 51.1 1.0
C3D P:HEC501 4.3 52.0 1.0
C2A P:HEC501 4.3 51.9 1.0
C3A P:HEC501 4.3 51.6 1.0
OE1 P:GLN58 5.0 12.1 1.0

Iron binding site 7 out of 15 in 6xkz

Go back to Iron Binding Sites List in 6xkz
Iron binding site 7 out of 15 in the R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B) within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Fe502

b:49.1
occ:1.00
FE P:HEC502 0.0 49.1 1.0
ND P:HEC502 2.0 54.4 1.0
NE2 P:HIS212 2.0 40.9 1.0
NA P:HEC502 2.0 54.1 1.0
NE2 P:HIS111 2.0 40.4 1.0
NC P:HEC502 2.1 53.5 1.0
NB P:HEC502 2.1 54.3 1.0
CE1 P:HIS212 2.9 36.6 1.0
C4D P:HEC502 3.0 54.3 1.0
C1D P:HEC502 3.0 54.8 1.0
CD2 P:HIS111 3.0 36.8 1.0
C1A P:HEC502 3.0 54.8 1.0
CE1 P:HIS111 3.0 36.3 1.0
CD2 P:HIS212 3.1 37.0 1.0
C4C P:HEC502 3.1 54.2 1.0
C4A P:HEC502 3.1 53.6 1.0
C1C P:HEC502 3.1 54.2 1.0
C1B P:HEC502 3.1 54.4 1.0
C4B P:HEC502 3.2 53.6 1.0
CHA P:HEC502 3.4 54.5 1.0
CHD P:HEC502 3.4 54.8 1.0
CHB P:HEC502 3.5 53.5 1.0
CHC P:HEC502 3.5 53.9 1.0
ND1 P:HIS212 4.1 37.1 1.0
ND1 P:HIS111 4.1 36.8 1.0
CG P:HIS212 4.2 36.9 1.0
CG P:HIS111 4.2 36.8 1.0
C3D P:HEC502 4.2 54.4 1.0
C2D P:HEC502 4.2 54.7 1.0
C2A P:HEC502 4.3 54.0 1.0
C3A P:HEC502 4.3 54.2 1.0
C3C P:HEC502 4.3 54.3 1.0
C2C P:HEC502 4.3 54.5 1.0
C2B P:HEC502 4.4 53.7 1.0
C3B P:HEC502 4.4 52.9 1.0

Iron binding site 8 out of 15 in 6xkz

Go back to Iron Binding Sites List in 6xkz
Iron binding site 8 out of 15 in the R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B) within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Fe501

b:43.4
occ:1.00
FE Q:HEC501 0.0 43.4 1.0
NE2 Q:HIS38 2.0 57.4 1.0
NB Q:HEC501 2.0 47.2 1.0
NC Q:HEC501 2.0 48.4 1.0
NA Q:HEC501 2.1 48.5 1.0
ND Q:HEC501 2.1 48.0 1.0
SD Q:MET183 2.1 55.8 1.0
CD2 Q:HIS38 2.9 52.2 1.0
CE1 Q:HIS38 3.0 52.2 1.0
C4B Q:HEC501 3.0 48.2 1.0
C1C Q:HEC501 3.1 48.8 1.0
C4A Q:HEC501 3.1 48.4 1.0
C1B Q:HEC501 3.1 47.7 1.0
C1A Q:HEC501 3.1 48.5 1.0
C4C Q:HEC501 3.1 48.0 1.0
C4D Q:HEC501 3.1 48.1 1.0
C1D Q:HEC501 3.1 47.9 1.0
CHC Q:HEC501 3.4 49.0 1.0
CE Q:MET183 3.4 45.4 1.0
CHB Q:HEC501 3.4 48.3 1.0
CHD Q:HEC501 3.4 47.8 1.0
CHA Q:HEC501 3.4 48.8 1.0
CG Q:MET183 3.5 45.7 1.0
CG Q:HIS38 4.0 51.7 1.0
ND1 Q:HIS38 4.1 51.7 1.0
CB Q:MET183 4.2 45.7 1.0
C3B Q:HEC501 4.3 48.4 1.0
C2B Q:HEC501 4.3 48.3 1.0
C2A Q:HEC501 4.3 47.9 1.0
C3A Q:HEC501 4.3 48.1 1.0
C2C Q:HEC501 4.3 48.1 1.0
C3C Q:HEC501 4.3 48.2 1.0
C2D Q:HEC501 4.3 48.0 1.0
C3D Q:HEC501 4.3 47.9 1.0

Iron binding site 9 out of 15 in 6xkz

Go back to Iron Binding Sites List in 6xkz
Iron binding site 9 out of 15 in the R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B) within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Fe501

b:74.5
occ:1.00
FE1 R:FES501 0.0 74.5 1.0
S1 R:FES501 2.2 74.5 1.0
S2 R:FES501 2.2 74.5 1.0
SG R:CYS133 2.3 105.9 0.2
SG R:CYS153 2.3 107.2 0.2
CB R:CYS133 2.8 103.8 0.2
FE2 R:FES501 3.1 74.5 1.0
CB R:CYS153 3.6 108.3 0.2
CB R:CYS138 3.8 104.2 0.2
CB R:HIS135 3.9 108.1 0.2
CA R:CYS133 4.2 102.4 0.2
N R:CYS138 4.3 102.3 0.2
ND1 R:HIS135 4.5 110.7 0.2
CB R:CYS155 4.5 109.1 0.2
CA R:CYS138 4.6 102.5 0.2
N R:LEU136 4.6 105.3 0.2
SG R:CYS138 4.6 105.4 0.2
OG R:SER158 4.6 111.4 0.2
CG R:HIS135 4.7 109.6 0.2
C R:CYS133 4.7 102.4 0.2
N R:HIS135 4.7 105.4 0.2
CA R:HIS135 4.8 106.7 0.2
O R:CYS133 4.8 102.0 0.2
O R:CYS138 4.9 101.1 0.2
CA R:CYS153 4.9 108.5 0.2
N R:GLY137 5.0 102.5 0.2
C R:CYS138 5.0 101.6 0.2

Iron binding site 10 out of 15 in 6xkz

Go back to Iron Binding Sites List in 6xkz
Iron binding site 10 out of 15 in the R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of R. Capsulatus CIII2CIV Tripartite Super-Complex, Conformation B (Sc- 1B) within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Fe501

b:74.5
occ:1.00
FE2 R:FES501 0.0 74.5 1.0
ND1 R:HIS135 2.1 110.7 0.2
ND1 R:HIS156 2.1 111.9 0.2
S2 R:FES501 2.2 74.5 1.0
S1 R:FES501 2.2 74.5 1.0
CG R:HIS156 3.0 113.8 0.2
CE1 R:HIS135 3.0 112.0 0.2
FE1 R:FES501 3.1 74.5 1.0
CG R:HIS135 3.2 109.6 0.2
CB R:HIS156 3.2 114.3 0.2
CE1 R:HIS156 3.2 112.0 0.2
CB R:HIS135 3.5 108.1 0.2
N R:HIS156 3.7 112.9 0.2
CB R:CYS155 3.9 109.1 0.2
CA R:HIS156 4.1 114.7 0.2
CD2 R:HIS156 4.2 114.9 0.2
NE2 R:HIS135 4.2 111.9 0.2
NE2 R:HIS156 4.2 113.8 0.2
C R:CYS155 4.2 112.5 0.2
CD2 R:HIS135 4.3 110.4 0.2
SG R:CYS153 4.4 107.2 0.2
N R:LEU136 4.7 105.3 0.2
CA R:CYS155 4.7 110.7 0.2
OG R:SER158 4.7 111.4 0.2
SG R:CYS133 4.8 105.9 0.2
O R:CYS155 4.9 113.7 0.2
CA R:HIS135 4.9 106.7 0.2
CB R:LEU136 4.9 106.1 0.2
C R:HIS156 5.0 115.6 0.2
CG R:LEU136 5.0 107.7 0.2

Reference:

S.Steimle, T.Van Eeuwen, Y.Ozturk, H.J.Kim, M.Braitbard, N.Selamoglu, B.A.Garcia, D.Schneidman-Duhovny, K.Murakami, F.Daldal. Cryo-Em Structures of Respiratory BC1-CBB3 Type CIII2CIV Supercomplex and Electronic Communication Between the Complexes To Be Published.
Page generated: Sun Jan 24 17:06:32 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy